Gromacs
2016
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Directories | |
directory | tests |
Unit tests for Low-Level Utilities (utility). | |
Files | |
file | alignedallocator.cpp |
Implements AlignedAllocator. | |
file | alignedallocator.h |
Declares gmx::AlignedAllocator that is used to make standard library containers compatible with SIMD contents that require aligned load/store. | |
file | arrayref.h |
Declares gmx::ArrayRef and gmx::ConstArrayRef. | |
file | arraysize.h |
Provides asize() macro for calculating the static size of an array. | |
file | basedefinitions.h |
Basic types and macros used throughout GROMACS. | |
file | basenetwork.cpp |
file | basenetwork.h |
Utility functions for basic MPI and network functionality. | |
file | baseversion-gen.h |
Declares variables that hold generated version information. | |
file | baseversion.cpp |
file | baseversion.h |
Declares functions to get basic version information. | |
file | binaryinformation.cpp |
Implements functionality for printing information about the currently running binary. | |
file | binaryinformation.h |
Helper functionality for information about the currently running binary. | |
file | bitmask.h |
Declares gmx_bitmask_t and associated functions. | |
file | classhelpers.h |
Declares common utility classes and macros. | |
file | coolstuff.cpp |
Functionality for printing cool strings. | |
file | coolstuff.h |
Functionality for printing cool strings. | |
file | cstringutil.cpp |
file | cstringutil.h |
Generic C string handling functions. | |
file | cuda_version_information.h |
file | current_function.h |
Declares GMX_CURRENT_FUNCTION for getting the current function name. | |
file | datafilefinder.cpp |
Implements gmx::DataFileFinder. | |
file | datafilefinder.h |
Declares gmx::DataFileFinder and related classes. | |
file | dir_separator.h |
Provides OS-specific directory-name separator. | |
file | directoryenumerator.cpp |
Implements gmx::DirectoryEnumerator. | |
file | directoryenumerator.h |
Declares gmx::DirectoryEnumerator. | |
file | errorcodes.cpp |
Implements functions in errorcodes.h. | |
file | errorcodes.h |
Declares error codes and related functions for fatal error handling. | |
file | errorformat.cpp |
Implements functions declared in errorformat.h. | |
file | errorformat.h |
Declares an internal helper function for formatting standard error messages. | |
file | exceptions.cpp |
Implements classes and functions in exceptions.h. | |
file | exceptions.h |
Declares common exception classes and macros for fatal error handling. | |
file | fatalerror.cpp |
file | fatalerror.h |
Declares fatal error handling and debugging routines for C code. | |
file | fileredirector.cpp |
Implements classes and functions from fileredirector.h. | |
file | fileredirector.h |
Declares gmx::IFileOutputRedirector. | |
file | filestream.cpp |
Implements classes from filestream.h. | |
file | filestream.h |
Declares implementations for textstream.h interfaces for file input/output. | |
file | flags.h |
Declares gmx::FlagsTemplate. | |
file | futil.cpp |
file | futil.h |
Low-level wrappers for OS-specific file handling with some GROMACS customizations. | |
file | gmxassert.cpp |
Implements assertion handlers. | |
file | gmxassert.h |
Defines assert macros customized for Gromacs. | |
file | gmxmpi.h |
Wraps <mpi.h> usage in Gromacs. | |
file | gmxomp.cpp |
Implements functions from gmxomp.h. | |
file | gmxomp.h |
Declares OpenMP wrappers to avoid conditional compilation. | |
file | gmxregex.cpp |
Implements regular expression wrappers. | |
file | gmxregex.h |
Declares simple wrapper for regular expression functionality. | |
file | init.cpp |
Implements functions from init.h. | |
file | init.h |
Declares functions for initializing the GROMACS library. | |
file | int64_to_int.cpp |
file | int64_to_int.h |
Low-level utility for converting 64 bit int to int (the size of which is hardware dependent), printing a warning if an overflow will occur. | |
file | mutex.h |
Declares C++11-style basic threading primitives (gmx::Mutex, gmx::lock_guard). | |
file | nodelete.h |
Declares no_delete deleter for std::shared_ptr. | |
file | path.cpp |
Implements functions in path.h. | |
file | path.h |
Declares functions for OS-independent path handling. | |
file | pleasecite.cpp |
file | pleasecite.h |
Declares please_cite() for printing out literature references. | |
file | programcontext.cpp |
Implements gmx::IProgramContext and related methods. | |
file | programcontext.h |
Declares gmx::IProgramContext and related methods. | |
file | qsort_threadsafe.cpp |
file | qsort_threadsafe.h |
Portable implementation of threadsafe quicksort. | |
file | real.h |
Declares real and related constants. | |
file | scoped_cptr.h |
Declares gmx::scoped_cptr and gmx::scoped_guard_sfree. | |
file | smalloc.cpp |
file | smalloc.h |
C memory allocation routines for GROMACS. | |
file | snprintf.h |
Provide snprintf symbol on all OS (for internal Gromacs use) | |
file | strdb.cpp |
file | strdb.h |
Declares C functions for reading files with a list of strings. | |
file | stringstream.cpp |
Implements classes from stringstream.h. | |
file | stringstream.h |
Declares implementations for textstream.h interfaces for input/output to in-memory strings. | |
file | stringutil.cpp |
Implements functions and classes in stringutil.h. | |
file | stringutil.h |
Declares common string utility and formatting routines. | |
file | sysinfo.cpp |
Implements functions from sysinfo.h. | |
file | sysinfo.h |
Declares functions for obtaining information about the operating environment and the current process. | |
file | textreader.cpp |
Implements gmx::TextReader. | |
file | textreader.h |
Declares gmx::TextReader. | |
file | textstream.h |
Declares interfaces for simple input/output streams. | |
file | textwriter.cpp |
Implements gmx::TextWriter. | |
file | textwriter.h |
Declares gmx::TextWriter. | |
file | txtdump.cpp |
file | txtdump.h |
Declares helper functions for dumping basic data structures as text. | |