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programs → gromacs Relation
File in src/programs
Includes file in src/gromacs
view
/
3dview.cpp
utility
/
fatalerror.h
view
/
3dview.cpp
utility
/
smalloc.h
view
/
3dview.h
utility
/
basedefinitions.h
view
/
3dview.h
utility
/
real.h
view
/
buttons.cpp
utility
/
cstringutil.h
view
/
buttons.cpp
utility
/
smalloc.h
mdrun
/
tests
/
compressed_x_output.cpp
options
/
filenameoption.h
mdrun
/
deform.h
utility
/
basedefinitions.h
view
/
dialogs.cpp
utility
/
arraysize.h
view
/
dialogs.cpp
utility
/
cstringutil.h
view
/
dialogs.cpp
utility
/
dir_separator.h
view
/
dialogs.cpp
utility
/
fatalerror.h
view
/
dialogs.cpp
utility
/
futil.h
view
/
dialogs.cpp
mdtypes
/
md_enums.h
view
/
dialogs.cpp
utility
/
smalloc.h
mdrun
/
tests
/
energyreader.cpp
utility
/
exceptions.h
mdrun
/
tests
/
energyreader.cpp
utility
/
scoped_cptr.h
mdrun
/
tests
/
energyreader.cpp
utility
/
stringutil.h
mdrun
/
tests
/
energyreader.h
utility
/
scoped_cptr.h
view
/
fgrid.cpp
utility
/
cstringutil.h
view
/
fgrid.cpp
utility
/
futil.h
view
/
fgrid.cpp
utility
/
smalloc.h
view
/
filter.cpp
utility
/
cstringutil.h
view
/
filter.cpp
utility
/
dir_separator.h
view
/
filter.cpp
utility
/
fatalerror.h
view
/
filter.cpp
utility
/
futil.h
view
/
filter.cpp
utility
/
smalloc.h
gmx.cpp
commandline
/
cmdlineinit.h
gmx.cpp
commandline
/
cmdlinemodulemanager.h
gmx.cpp
utility
/
exceptions.h
gmx.cpp
trajectoryanalysis
/
modules.h
gmx.cpp
selection
/
selhelp.h
legacymodules.cpp
commandline
/
cmdlinemodule.h
legacymodules.cpp
commandline
/
cmdlinemodulemanager.h
legacymodules.cpp
commandline
/
cmdlineoptionsmodule.h
view
/
logo.cpp
utility
/
arraysize.h
view
/
logo.cpp
utility
/
baseversion.h
view
/
logo.cpp
utility
/
real.h
view
/
logo.cpp
utility
/
smalloc.h
view
/
manager.cpp
utility
/
coolstuff.h
view
/
manager.cpp
utility
/
cstringutil.h
view
/
manager.cpp
utility
/
fatalerror.h
view
/
manager.cpp
utility
/
futil.h
view
/
manager.cpp
mdtypes
/
md_enums.h
view
/
manager.cpp
utility
/
smalloc.h
view
/
manager.cpp
utility
/
stringutil.h
view
/
manager.h
utility
/
real.h
mdrun
/
md.cpp
utility
/
basedefinitions.h
mdrun
/
md.cpp
utility
/
cstringutil.h
mdrun
/
md.cpp
domdec
/
domdec.h
mdrun
/
md.cpp
domdec
/
domdec_network.h
mdrun
/
md.cpp
domdec
/
domdec_struct.h
mdrun
/
md.cpp
utility
/
fatalerror.h
mdrun
/
md.cpp
commandline
/
filenm.h
mdrun
/
md.cpp
math
/
functions.h
mdrun
/
md.cpp
gpu_utils
/
gpu_utils.h
mdrun
/
md.cpp
imd
/
imd.h
mdrun
/
md.cpp
listed-forces
/
manage-threading.h
mdrun
/
md.cpp
mdtypes
/
md_enums.h
mdrun
/
md.cpp
mdlib
/
nbnxn_gpu_data_mgmt.h
mdrun
/
md.cpp
ewald
/
pme-load-balancing.h
mdrun
/
md.cpp
ewald
/
pme.h
mdrun
/
md.cpp
pulling
/
pull.h
mdrun
/
md.cpp
utility
/
real.h
mdrun
/
md.cpp
mdlib
/
simulationsignal.h
mdrun
/
md.cpp
utility
/
smalloc.h
mdrun
/
md.cpp
swap
/
swapcoords.h
mdrun
/
mdrun.cpp
utility
/
arraysize.h
mdrun
/
mdrun.cpp
utility
/
fatalerror.h
mdrun
/
mdrun.cpp
commandline
/
filenm.h
mdrun
/
mdrun.cpp
mdrunutility
/
handlerestart.h
mdrun
/
mdrun.cpp
commandline
/
pargs.h
mdrun_main.cpp
commandline
/
cmdlinemodulemanager.h
mdrun
/
tests
/
mdruncomparisonfixture.cpp
utility
/
stringutil.h
mdrun
/
membed.cpp
utility
/
cstringutil.h
mdrun
/
membed.cpp
essentialdynamics
/
edsam.h
mdrun
/
membed.cpp
utility
/
fatalerror.h
mdrun
/
membed.cpp
commandline
/
filenm.h
mdrun
/
membed.cpp
utility
/
futil.h
mdrun
/
membed.cpp
mdtypes
/
md_enums.h
mdrun
/
membed.cpp
utility
/
smalloc.h
mdrun
/
membed.h
utility
/
real.h
mdrun
/
tests
/
moduletest.cpp
utility
/
basedefinitions.h
mdrun
/
tests
/
moduletest.cpp
utility
/
basenetwork.h
mdrun
/
tests
/
moduletest.cpp
options
/
basicoptions.h
mdrun
/
tests
/
moduletest.cpp
utility
/
gmxmpi.h
mdrun
/
tests
/
moduletest.cpp
options
/
ioptionscontainer.h
mdrun
/
tests
/
moduletest.cpp
utility
/
textwriter.h
view
/
molps.cpp
utility
/
smalloc.h
mdrun
/
tests
/
multisimtest.cpp
utility
/
basenetwork.h
mdrun
/
tests
/
multisimtest.cpp
utility
/
path.h
mdrun
/
tests
/
multisimtest.cpp
utility
/
real.h
mdrun
/
tests
/
multisimtest.cpp
utility
/
stringutil.h
view
/
nleg.cpp
utility
/
arraysize.h
view
/
nleg.cpp
utility
/
smalloc.h
view
/
nmol.cpp
utility
/
fatalerror.h
view
/
nmol.cpp
utility
/
smalloc.h
view
/
popup.cpp
utility
/
smalloc.h
view
/
pulldown.cpp
utility
/
smalloc.h
mdrun
/
repl_ex.cpp
domdec
/
domdec.h
mdrun
/
repl_ex.cpp
utility
/
fatalerror.h
mdrun
/
repl_ex.cpp
mdtypes
/
md_enums.h
mdrun
/
repl_ex.cpp
utility
/
pleasecite.h
mdrun
/
repl_ex.cpp
utility
/
smalloc.h
mdrun
/
repl_ex.cpp
random
/
threefry.h
mdrun
/
repl_ex.cpp
random
/
uniformintdistribution.h
mdrun
/
repl_ex.cpp
random
/
uniformrealdistribution.h
mdrun
/
repl_ex.h
utility
/
basedefinitions.h
mdrun
/
repl_ex.h
utility
/
real.h
mdrun
/
tests
/
replicaexchange.cpp
utility
/
path.h
mdrun
/
tests
/
replicaexchange.cpp
utility
/
stringutil.h
mdrun
/
tests
/
rerun.cpp
options
/
filenameoption.h
mdrun
/
resource-division.cpp
hardware
/
cpuinfo.h
mdrun
/
resource-division.cpp
utility
/
fatalerror.h
mdrun
/
resource-division.cpp
utility
/
gmxassert.h
mdrun
/
resource-division.cpp
hardware
/
hardwaretopology.h
mdrun
/
resource-division.cpp
mdtypes
/
md_enums.h
mdrun
/
resource-division.cpp
utility
/
stringutil.h
mdrun
/
resource-division.h
utility
/
basedefinitions.h
mdrun
/
runner.cpp
math
/
calculate-ewald-splitting-coefficient.h
mdrun
/
runner.cpp
hardware
/
cpuinfo.h
mdrun
/
runner.cpp
utility
/
cstringutil.h
mdrun
/
runner.cpp
listed-forces
/
disre.h
mdrun
/
runner.cpp
domdec
/
domdec.h
mdrun
/
runner.cpp
domdec
/
domdec_struct.h
mdrun
/
runner.cpp
essentialdynamics
/
edsam.h
mdrun
/
runner.cpp
utility
/
exceptions.h
mdrun
/
runner.cpp
utility
/
fatalerror.h
mdrun
/
runner.cpp
commandline
/
filenm.h
mdrun
/
runner.cpp
math
/
functions.h
mdrun
/
runner.cpp
utility
/
gmxassert.h
mdrun
/
runner.cpp
utility
/
gmxmpi.h
mdrun
/
runner.cpp
gpu_utils
/
gpu_utils.h
mdrun
/
runner.cpp
mdtypes
/
md_enums.h
mdrun
/
runner.cpp
listed-forces
/
orires.h
mdrun
/
runner.cpp
utility
/
pleasecite.h
mdrun
/
runner.cpp
ewald
/
pme.h
mdrun
/
runner.cpp
pulling
/
pull.h
mdrun
/
runner.cpp
pulling
/
pull_rotation.h
mdrun
/
runner.cpp
utility
/
smalloc.h
mdrun
/
runner.cpp
mdrunutility
/
threadaffinity.h
mdrun
/
runner.h
utility
/
basedefinitions.h
mdrun
/
runner.h
utility
/
real.h
mdrun
/
tests
/
tabulated_bonded_interactions.cpp
utility
/
stringutil.h
mdrun
/
tests
/
tabulated_bonded_interactions.cpp
utility
/
textwriter.h
mdrun
/
tests
/
terminationhelper.cpp
utility
/
path.h
mdrun
/
tests
/
trajectory_writing.cpp
options
/
filenameoption.h
mdrun
/
tests
/
trajectory_writing.cpp
utility
/
stringutil.h
mdrun
/
tests
/
trajectoryreader.cpp
utility
/
exceptions.h
mdrun
/
tests
/
trajectoryreader.cpp
utility
/
scoped_cptr.h
mdrun
/
tests
/
trajectoryreader.cpp
utility
/
stringutil.h
mdrun
/
tests
/
trajectoryreader.h
utility
/
scoped_cptr.h
view
/
view.cpp
utility
/
arraysize.h
view
/
view.cpp
utility
/
coolstuff.h
view
/
view.cpp
utility
/
fatalerror.h
view
/
view.cpp
commandline
/
pargs.h
view
/
view.cpp
utility
/
smalloc.h
view
/
x11.cpp
utility
/
cstringutil.h
view
/
x11.cpp
utility
/
smalloc.h
view
/
xdlg.cpp
utility
/
cstringutil.h
view
/
xdlg.cpp
utility
/
fatalerror.h
view
/
xdlg.cpp
utility
/
smalloc.h
view
/
xdlghi.cpp
utility
/
cstringutil.h
view
/
xdlghi.cpp
utility
/
fatalerror.h
view
/
xdlghi.cpp
utility
/
smalloc.h
view
/
xdlgitem.cpp
utility
/
cstringutil.h
view
/
xdlgitem.cpp
utility
/
fatalerror.h
view
/
xdlgitem.cpp
utility
/
smalloc.h
view
/
xmb.cpp
utility
/
fatalerror.h
view
/
xutil.cpp
utility
/
cstringutil.h
view
/
xutil.cpp
utility
/
smalloc.h
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