Here is a list of all documented class members with links to the class documentation for each member:
- a -
- a()
: gmx::anonymous_namespace{electricfield.cpp}::ElectricFieldData
, gmx::UniformIntDistribution< IntType >::param_type
, gmx::UniformRealDistribution< RealType >::param_type
, gmx::UniformRealDistribution< RealType >
, gmx::UniformIntDistribution< IntType >
- a_fmax
: em_state_t
- aa
: gmx::analysismodules::anonymous_namespace{sasa.cpp}::t_conect
- ab
: gmx::analysismodules::anonymous_namespace{sasa.cpp}::t_conect
- absoluteTolerance()
: gmx::test::FloatingPointTolerance
- absTol_
: gmx::test::SimdBaseTest
- AbstractAnalysisArrayData()
: gmx::AbstractAnalysisArrayData
- AbstractAnalysisData()
: gmx::AbstractAnalysisData
- AbstractAverageHistogram()
: gmx::AbstractAverageHistogram
- AbstractOption()
: gmx::AbstractOption
- AbstractOptionSection()
: gmx::AbstractOptionSection
- AbstractOptionSectionHandle()
: gmx::AbstractOptionSectionHandle
- AbstractOptionStorage
: gmx::AbstractOption
, gmx::AbstractOptionStorage
- AbstractOptionStoragePointer
: gmx::internal::OptionSectionImpl
- AbstractPlotModule()
: gmx::AbstractPlotModule
- acceptOptions()
: gmx::OptionsIterator
, gmx::OptionsModifyingIterator
- acceptSections()
: gmx::OptionsIterator
, gmx::OptionsModifyingIterator
- accum_m
: df_history_t
- accum_m2
: df_history_t
- accum_p
: df_history_t
- accum_p2
: df_history_t
- accumulator_
: gmx::AnalysisDataSimpleHistogramModule::Impl
, gmx::AnalysisDataWeightedHistogramModule::Impl
- acTrestart
: t_UmbrellaOptions
- add()
: gmx::OptionManagerContainer
, gmx::test::anonymous_namespace{testoptions.cpp}::TestOptionsRegistry
- addArray()
: gmx::KeyValueTreeObjectBuilder
- addBehavior()
: gmx::OptionsBehaviorCollection
- addBlockToCorrelationIntegral()
: gmx::CorrelationBlockData
- addCastConversion()
: gmx::OptionValueConverterSimple< OutType >
- addColumn()
: gmx::TextTableFormatter
- addColumnHelpTextBlock()
: gmx::TextTableFormatter
- addColumnLine()
: gmx::TextTableFormatter
- addColumnModule()
: gmx::AbstractAnalysisData
- addConverter()
: gmx::OptionValueConverterSimple< OutType >
- addCurrentExceptionAsNested()
: gmx::ExceptionInitializer
- addData()
: gmx::CorrelationGrid
, gmx::CorrelationBlockData
, gmx::CorrelationTensor
- addDefaultFileNameOption()
: gmx::FileNameOptionManager
- addDummyValue()
: anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage
- addExistingFile()
: gmx::test::TestFileInputRedirector
- addForceProvider()
: ForceProviders
- addFrame()
: gmx::test::AnalysisDataTestInput
- addFrameWithValueAndError()
: gmx::test::AnalysisDataTestInput
- addFrameWithValues()
: gmx::test::AnalysisDataTestInput
- addGroup()
: gmx::AbstractOptionSectionHandle
, gmx::IOptionsContainer
, gmx::internal::OptionSectionImpl::Group
, gmx::internal::OptionSectionImpl
, gmx::Options
, gmx::analysismodules::anonymous_namespace{select.cpp}::IndexFileWriterModule
- addHelpTopic()
: gmx::test::CommandLineModuleManagerTestBase
, gmx::CommandLineModuleManager
- addLifetime()
: gmx::AnalysisDataLifetimeModule::Impl
- addLink()
: gmx::HelpLinks
- addManager()
: gmx::Options
- addMethod()
: gmx::SelectionParserSymbolTable
- addModule()
: gmx::AbstractAnalysisData
, gmx::AnalysisDataModuleManager
, gmx::CommandLineModuleGroupData
, gmx::CommandLineModuleManager::Impl
, gmx::CommandLineModuleManager
, gmx::CommandLineModuleGroup
, gmx::test::CommandLineModuleManagerTestBase
- addModuleCMain()
: gmx::CommandLineModuleManager
- addModuleCMainWithSettings()
: gmx::CommandLineModuleManager
- addModuleGroup()
: gmx::CommandLineModuleManager
- addModuleWithDescription()
: gmx::CommandLineModuleGroup
- addNested()
: gmx::ExceptionInitializer
- addObject()
: gmx::KeyValueTreeObjectArrayBuilder
, gmx::KeyValueTreeObjectBuilder
- addObjectArray()
: gmx::KeyValueTreeObjectBuilder
- addOption()
: gmx::IOptionsContainer
, gmx::test::CommandLine
- addOptionImpl()
: gmx::IOptionsContainer
, gmx::internal::OptionSectionImpl::Group
, gmx::internal::OptionSectionImpl
- addOptionsBehavior()
: gmx::ICommandLineOptionsModuleSettings
- addOptionsModule()
: gmx::test::CommandLineModuleManagerTestBase
- addPartialWeightAndCount()
: gmx::PointState
- addPoints()
: gmx::AnalysisDataFrameAverager
- addPointSet()
: gmx::internal::AnalysisDataStorageFrameData
, gmx::test::AnalysisDataTestInputFrame
- addPointSetWithValueAndError()
: gmx::test::AnalysisDataTestInputFrame
- addPointSetWithValues()
: gmx::test::AnalysisDataTestInputFrame
- addPositionSymbols()
: gmx::SelectionParserSymbolTable::Impl
- addRawValue()
: gmx::KeyValueTreeObjectBuilder
- addReferenceCheckerModule()
: gmx::test::AnalysisDataTestFixture
- addReplacement()
: gmx::HelpWriterContext::Impl
- addReservedSymbols()
: gmx::SelectionParserSymbolTable::Impl
- address
: IMDSocket
, gmx::Allocator< T, AllocationPolicy >
- addRule()
: gmx::IKeyValueTreeTransformRules
- addSection()
: gmx::IOptionsContainerWithSections
- addSectionImpl()
: gmx::IOptionsContainerWithSections
, gmx::internal::OptionSectionImpl
- addSelections()
: gmx::SelectionOptionStorage
- addStaticCheckerModule()
: gmx::test::AnalysisDataTestFixture
- addStaticColumnCheckerModule()
: gmx::test::AnalysisDataTestFixture
- addStaticParallelCheckerModule()
: gmx::test::AnalysisDataTestFixture
- addStaticStorageCheckerModule()
: gmx::test::AnalysisDataTestFixture
- addSubTopic()
: gmx::AbstractCompositeHelpTopic
- addSymbol()
: gmx::SelectionParserSymbolTable::Impl
- addTargetFile()
: gmx::LoggerBuilder
- addTargetStream()
: gmx::LoggerBuilder
- addTimeUnitOption()
: gmx::TimeUnitBehavior
- addTopic()
: gmx::CommandLineHelpModule
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::RootHelpTopic
- addUniformArray()
: gmx::KeyValueTreeObjectBuilder
- addValue()
: gmx::AnalysisDataFrameAverager
, gmx::test::AnalysisDataTestInputPointSet
, gmx::OptionStorageTemplate< T >
, gmx::KeyValueTreeUniformArrayBuilder< T >
, gmx::KeyValueTreeObjectBuilder
- addValueWithError()
: gmx::test::AnalysisDataTestInputPointSet
- addVariable()
: gmx::SelectionParserSymbolTable
- addVirialContribution()
: gmx::ForceWithVirial
- adjustFromSettings()
: gmx::CommandLineCommonOptionsHolder
- adjustInputrecBasedOnModules()
: gmx::MDModules
- adress_bits
: gmx_device_info_t
- AfterFrom()
: gmx::KeyValueTreeTransformRuleBuilder::AfterFrom< FromType >
- alignment()
: gmx::HostAllocationPolicy
, gmx::AlignedAllocationPolicy
, gmx::PageAlignedAllocationPolicy
- allocate()
: gmx::Allocator< T, AllocationPolicy >
- allocateValues()
: gmx::AbstractAnalysisArrayData
- allocation_policy
: gmx::Allocator< T, AllocationPolicy >
- Allocator()
: gmx::Allocator< T, AllocationPolicy >
- AllocatorType
: gmx::anonymous_namespace{hostallocator.cpp}::HostAllocatorTest< T >
- allowedValues()
: gmx::StringOptionInfo
, gmx::EnumOptionInfo
, gmx::StringOptionStorage
, gmx::EnumOptionStorage
- allowEmpty()
: gmx::SelectionOption
- allowMissing()
: gmx::FileNameOption
, gmx::FileNameOptionInfo
, gmx::FileNameOptionStorage
- allowMultiple()
: gmx::OptionTemplate< T, U >
- allowPositionalArguments()
: gmx::CommandLineParser
- allowsOnlyAtoms()
: gmx::SelectionOptionStorage
- allPresent()
: gmx::AnalysisDataPointSetRef
, gmx::AnalysisDataFrameRef
- allSizes()
: gmx::UnionFinder
, gmx::MappedUnionFinder
- allValuesConsistentlySelected()
: gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator
- alpha()
: gmx::GammaDistribution< RealType >
, gmx::GammaDistribution< RealType >::param_type
- AlwaysAtomSelections
: gmx::SelectionCollection
- Amd
: gmx::CpuInfo
- AnalysisArrayData()
: gmx::AnalysisArrayData
- AnalysisData
: gmx::AnalysisDataHandle
, gmx::AnalysisData
- AnalysisDataBinAverageModule()
: gmx::AnalysisDataBinAverageModule
- AnalysisDataFrameHeader()
: gmx::AnalysisDataFrameHeader
- AnalysisDataFrameLocalData()
: gmx::AnalysisDataFrameLocalData< ValueType >
- AnalysisDataFrameLocalDataHandle()
: gmx::AnalysisDataFrameLocalDataHandle< ValueType >
- AnalysisDataFrameLocalDataSetHandle()
: gmx::AnalysisDataFrameLocalDataSetHandle< ValueType >
- AnalysisDataFrameRef()
: gmx::AnalysisDataFrameRef
- AnalysisDataHandle()
: gmx::AnalysisDataHandle
- AnalysisDataHandleImpl()
: gmx::internal::AnalysisDataHandleImpl
- AnalysisDataParallelOptions()
: gmx::AnalysisDataParallelOptions
- AnalysisDataPlotModule()
: gmx::AnalysisDataPlotModule
- AnalysisDataPlotSettings()
: gmx::AnalysisDataPlotSettings
- AnalysisDataPointSetRef()
: gmx::AnalysisDataPointSetRef
- AnalysisDataProxy()
: gmx::AnalysisDataProxy
- AnalysisDatasetContainer
: gmx::TrajectoryAnalysisModule::Impl
- analysisDatasets_
: gmx::TrajectoryAnalysisModule::Impl
- AnalysisDataSimpleHistogramModule()
: gmx::AnalysisDataSimpleHistogramModule
- AnalysisDataStorage()
: gmx::AnalysisDataStorage
- AnalysisDataStorageFrameData()
: gmx::internal::AnalysisDataStorageFrameData
- AnalysisDataTestInput
: gmx::test::AnalysisDataTestInputFrame
, gmx::test::AnalysisDataTestInput
- AnalysisDataTestInputFrame
: gmx::test::AnalysisDataTestInputPointSet
- AnalysisDataValue()
: gmx::AnalysisDataValue
- AnalysisDataVectorPlotModule()
: gmx::AnalysisDataVectorPlotModule
- AnalysisDataWeightedHistogramModule()
: gmx::AnalysisDataWeightedHistogramModule
- AnalysisHistogramSettings()
: gmx::AnalysisHistogramSettings
- AnalysisHistogramSettingsInitializer()
: gmx::AnalysisHistogramSettingsInitializer
- AnalysisNeighborhood()
: gmx::AnalysisNeighborhood
- AnalysisNeighborhoodPair()
: gmx::AnalysisNeighborhoodPair
- AnalysisNeighborhoodPairSearch()
: gmx::AnalysisNeighborhoodPairSearch
- AnalysisNeighborhoodPositions()
: gmx::AnalysisNeighborhoodPositions
- AnalysisNeighborhoodSearch()
: gmx::AnalysisNeighborhoodSearch
- analyzeFrame()
: AnalysisTemplate
, gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf
, gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistance
, gmx::TrajectoryAnalysisModule
, gmx::analysismodules::anonymous_namespace{freevolume.cpp}::FreeVolume
, gmx::analysismodules::anonymous_namespace{sasa.cpp}::Sasa
- angcut
: t_methoddata_insolidangle
- AnglePositionIterator()
: gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator
- APIError()
: gmx::APIError
- apm
: swap_group
- append()
: gmx::KeyValueTreePath
, gmx::MessageStringCollector
, gmx::IOptionValueStore< T >
, gmx::test::CommandLine
, gmx::internal::EnumIndexStore< EnumType >
, gmx::OptionValueStoreNull< T >
, gmx::MessageStringCollector
, gmx::test::CommandLine
- appendFiles
: ContinuationOptions
- appendFilesOptionSet
: ContinuationOptions
- appendLegend()
: gmx::AbstractPlotModule
- appendPath()
: gmx::test::TestReferenceChecker::Impl
- appendText()
: gmx::LogEntryWriter
- appendTextFormatted()
: gmx::LogEntryWriter
- appendValue()
: gmx::AbstractOptionStorage
, gmx::OptionsAssigner
- applyBiasForcesAndUpdateBias()
: gmx::Awh
- applyConstraint()
: anonymous_namespace{resourcedivision.cpp}::SingleRankChecker
- applyModule()
: gmx::AbstractAnalysisData
, gmx::AnalysisDataModuleManager
- archSpecific
: PmeGpu
- areForcesRequested()
: gmx::SelectionCollection::Impl
- arg()
: gmx::test::CommandLine
- argc()
: gmx::test::CommandLine
- argv()
: gmx::test::CommandLine
- arith
: gmx::SelectionTreeElement
- Arm
: gmx::CpuInfo
- Arm_Neon
: gmx::CpuInfo
- Arm_NeonAsimd
: gmx::CpuInfo
- ArrayRef()
: gmx::ArrayRef< T >
- arrayRefFromArray()
: gmx::ArrayRef< T >
- as
: t_methoddata_same
- as_s_sorted
: t_methoddata_same
- as_vec()
: gmx::BasicVector< ValueType >
- asAbsolute()
: gmx::test::FloatingPointDifference
- asParagraph()
: gmx::LogEntryWriter
- assign()
: anonymous_namespace{evaluate.cpp}::SelelemTemporaryValueAssigner
- assigner_
: gmx::CommandLineParser::Impl
- assignOptionsToModules()
: gmx::MDModules
- associativity
: gmx::HardwareTopology::Cache
- asUlps()
: gmx::test::FloatingPointDifference
- at()
: gmx::ArrayRef< T >
, gmx::test::EnergyFrame
- at_end
: gmx_domdec_specat_comm_t
- at_start
: gmx_domdec_specat_comm_t
- atdat
: gmx_nbnxn_cuda_t
, nbnxn_gpu_timers_t
, gmx_nbnxn_ocl_t
- atom
: AtomIndex
- atom_types
: cl_atomdata
, cu_atomdata
- atomAreas_
: gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData
- atomCount()
: gmx::SelectionPosition
, gmx::Selection
- atomIndex
: InterdependentTask
- atomIndices()
: gmx::Selection
, gmx::SelectionPosition
- atoms
: PmeGpuKernelParamsBase
- aver
: t_UmbrellaWindow
- average()
: gmx::AnalysisDataFrameAverager
, gmx::AnalysisDataAverageModule
- averager()
: gmx::AnalysisDataWeightedHistogramModule
, gmx::AnalysisDataSimpleHistogramModule
- averager_
: gmx::internal::BasicHistogramImpl
- Awh()
: gmx::Awh
- awhBiasParams
: gmx::test::AwhTestParameters
- awhDimParams
: gmx::test::AwhTestParameters
- AwhEnergyBlock()
: gmx::AwhEnergyBlock
- awhHistory
: t_state
- awhOutputFile()
: BiasReader
- awhParams
: gmx::test::AwhTestParameters
- AwhReader()
: AwhReader
- axis()
: gmx::Grid