Here is a list of all documented class members with links to the class documentation for each member:
- c -
- c
: t_pargs
, gmx_kernel_timing_data_t
- c_ind_loc
: swap_group
- c_numCorrelationBlocks
: gmx::CorrelationTensor
- c_numPointsPerSigma
: gmx::Grid
- c_rf
: cl_nbparam_params
, cu_nbparam
, cl_nbparam
- c_scopeCutoff
: gmx::Grid
- cACC
: t_mdatoms
- caches
: gmx::HardwareTopology::Machine
- calcConvolvedBias()
: gmx::Bias
, gmx::BiasState
- calcConvolvedForce()
: gmx::BiasState
- calcForceAndUpdateBias()
: gmx::Bias
- calculate()
: gmx::SurfaceAreaCalculator
- calculateForces()
: gmx::anonymous_namespace{electricfield.cpp}::ElectricField
, gmx::IForceProvider
, ForceProviders
- calcUmbrellaForceAndPotential()
: gmx::BiasState
- callback
: gmx::test::anonymous_namespace{textreader.cpp}::TextReaderTestParams
- callGrompp()
: gmx::test::SimulationRunner
- callGromppOnThisRank()
: gmx::test::SimulationRunner
- callMdrun()
: gmx::test::SimulationRunner
- capacity()
: gmx::ArrayRef< T >
- cast()
: gmx::Variant
- castRef()
: gmx::Variant
- cBooleanNodeName
: gmx::test::TestReferenceChecker::Impl
- cdata
: gmx::SelectionTreeElement
- cell
: gmx_laa_t
, gmx_lal_t
- cellSizeX
: DomdecOptions
- cellSizeY
: DomdecOptions
- cellSizeZ
: DomdecOptions
- cENER
: t_mdatoms
- center
: t_methoddata_insolidangle
, swap_group
- cfrac
: t_methoddata_insolidangle
- cFREEZE
: t_mdatoms
- cg_gl
: t_state
- cg_p
: t_state
- cgrp
: gmx::SelectionTreeElement
- changePinningPolicy
: gmx::HostAllocationPolicy
- channel_label
: swap_group
- charge()
: gmx::SelectionPosition
- chargeA
: gmx_pme_pp
, t_mdatoms
- chargeB
: t_mdatoms
- charges
: gmx::test::anonymous_namespace{pmegathertest.cpp}::AtomSizedData
, gmx::Selection
- checkBondedInteractions
: DomdecOptions
- checkBoolean()
: gmx::test::TestReferenceChecker
- checkCompound()
: gmx::test::TestReferenceChecker
- checkDouble()
: gmx::test::TestReferenceChecker
- checkEmptySequence()
: gmx::test::TestReferenceChecker
- checkEntry()
: gmx::test::TestReferenceChecker::Impl
- checker()
: gmx::test::StringTestBase
- checkFile()
: gmx::test::IFileMatcher
- checkFileContents()
: gmx::test::StringTestBase
- checkFloat()
: gmx::test::TestReferenceChecker
- checkIndexGroup()
: gmx::SelectionTreeElement
- checkInt64()
: gmx::test::TestReferenceChecker
- checkInteger()
: gmx::test::TestReferenceChecker
- checkKeyValueTreeObject()
: gmx::test::TestReferenceChecker
- checkKeyValueTreeValue()
: gmx::test::TestReferenceChecker
- checkMdrun()
: gmx::test::BondedInteractionsTest
- checkModuleProperties()
: gmx::AnalysisDataModuleManager::Impl
- checkModuleProperty()
: gmx::AnalysisDataModuleManager::Impl
- checkOutputFiles()
: gmx::test::CommandLineTestHelper
, gmx::test::CommandLineTestBase
- checkpointOptions
: MdrunOptions
- CheckpointOptions()
: CheckpointOptions
- checkPresent()
: gmx::test::TestReferenceChecker
- checkReal()
: gmx::test::TestReferenceChecker
- checkRealFromString()
: gmx::test::TestReferenceChecker
- checkRedirectedFiles()
: gmx::test::TestFileOutputRedirector
- checkRedirectedOutput()
: gmx::test::CommandLineModuleManagerTestBase
- checkReferencePoints()
: gmx::test::MockAnalysisDataModule::Impl
- checkResults()
: gmx::test::anonymous_namespace{mutex.cpp}::DifferentTasksTest
- checkSequence()
: gmx::test::TestReferenceChecker
- checkSequenceArray()
: gmx::test::TestReferenceChecker
- checkSequenceCompound()
: gmx::test::TestReferenceChecker
- checkSession()
: gmx::test::InteractiveTestHelper
- checkStream()
: gmx::test::ITextBlockMatcher
- checkString()
: gmx::test::TestReferenceChecker
- checkText()
: gmx::test::StringTestBase
- checkTextBlock()
: gmx::test::TestReferenceChecker
- checkUChar()
: gmx::test::TestReferenceChecker
- checkUInt64()
: gmx::test::TestReferenceChecker
- checkUnsortedAtoms()
: gmx::SelectionTreeElement
- checkUnusedEntries()
: gmx::test::TestReferenceChecker
- checkValue()
: gmx::test::TestReferenceChecker
- checkVariant()
: gmx::test::TestReferenceChecker
- checkVector()
: gmx::test::TestReferenceChecker
- child
: gmx::SelectionTreeElement
, gmx::anonymous_namespace{exceptions.cpp}::ErrorMessage
- ci
: gmx::AnalysisDataDisplacementModule::Impl
- cIdAttrName
: gmx::test::TestReferenceChecker::Impl
- cInt64NodeName
: gmx::test::TestReferenceChecker::Impl
- cIntegerNodeName
: gmx::test::TestReferenceChecker::Impl
- cj4
: cu_plist
, cl_plist
- cj4_nalloc
: cu_plist
, cl_plist
- classId
: gmx::HardwareTopology::Device
- clear()
: gmx::AnalysisDataFrameLocalDataHandle< ValueType >
, gmx::TextTableFormatter
, gmx::internal::EnumIndexStore< EnumType >
, gmx::IOptionValueStore< T >
, gmx::OptionValueStoreNull< T >
, gmx::FlagsTemplate< FlagType >
, gmx::MessageStringCollector
, gmx::AnalysisDataValue
, gmx::AnalysisDataFrameLocalDataSetHandle< ValueType >
- clearAll()
: gmx::FlagsTemplate< FlagType >
- clearFlag()
: gmx::AbstractOption
, gmx::AbstractOptionStorage
- clearFrame()
: gmx::internal::AnalysisDataStorageFrameData
- clearSet()
: gmx::AbstractOptionStorage
, gmx::OptionStorageTemplate< T >
- clearSymbolTable()
: gmx::SelectionCollection::Impl
- clientsocket
: t_gmx_IMD
- clone()
: gmx::AbstractAverageHistogram
- close()
: gmx::StandardInputStream
, gmx::TextInputFile
, gmx::TextOutputFile
, gmx::StringOutputStream
, gmx::StringInputStream
, gmx::TextReader
, gmx::TextInputStream
, gmx::TextOutputStream
, gmx::TextWriter
- closeTimingRegion()
: GpuRegionTimerImpl< framework >
, GpuRegionTimerWrapper< framework >
, GpuRegionTimerImpl< GpuFramework::OpenCL >
- CMainCommandLineModule()
: gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule
- CMainFunction
: gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule
, gmx::CommandLineModuleManager
- cmpop
: t_methoddata_compare
- cmpt
: t_methoddata_compare
- cObjectType
: gmx::test::TestReferenceChecker::Impl
- coll
: gmx_ana_poscalc_t
- collection_
: gmx::SelectionOptionManager::Impl
- columnCount()
: gmx::AbstractAnalysisData
, gmx::AnalysisDataPointSetRef
, gmx::AnalysisDataStorageFrame
, gmx::AnalysisDataFrameAverager
, gmx::test::AnalysisDataTestInput
- columnCounts_
: gmx::AbstractAnalysisData::Impl
- ColumnData()
: gmx::TextTableFormatter::Impl::ColumnData
- columnData()
: gmx::TextTableFormatter::Impl
- ColumnList
: gmx::TextTableFormatter::Impl
- columns_
: gmx::TextTableFormatter::Impl
- CommandEvent
: GpuTraits< GpuFramework >
- commandLine()
: gmx::CommandLineProgramContext
, gmx::anonymous_namespace{programcontext.cpp}::DefaultProgramContext
, gmx::IProgramContext
, gmx::test::CommandLineTestBase
, gmx::test::anonymous_namespace{testinit.cpp}::TestProgramContext
- CommandLine()
: gmx::test::CommandLine
- CommandLineHelpContext()
: gmx::CommandLineHelpContext
- CommandLineHelpModule()
: gmx::CommandLineHelpModule
- CommandLineHelpWriter()
: gmx::CommandLineHelpWriter
- CommandLineModuleGroup()
: gmx::CommandLineModuleGroup
- CommandLineModuleGroupData()
: gmx::CommandLineModuleGroupData
- CommandLineModuleManager()
: gmx::CommandLineModuleManager
- CommandLineParser()
: gmx::CommandLineParser
- CommandLineProgramContext()
: gmx::CommandLineProgramContext
- CommandLineTestHelper()
: gmx::test::CommandLineTestHelper
- CommandsHelpTopic()
: gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::CommandsHelpTopic
- CommandStream
: GpuTraits< GpuFramework >
- commentChar_
: gmx::TextReader::Impl
- commitValues()
: gmx::OptionStorageTemplate< T >
- common
: PmeGpu
- comp
: swap_group
- comp_from
: swap_group
- comp_now
: swap_group
- compareFrames
: gmx::test::EnergyFrame
- compareRootEntry_
: gmx::test::internal::TestReferenceDataImpl
, gmx::test::TestReferenceChecker::Impl
- compareSimd4RealEq()
: gmx::test::Simd4Test
- compareSimd4RealUlp()
: gmx::test::Simd4Test
- compareSimdEq()
: gmx::test::SimdTest
- compareSimdRealUlp()
: gmx::test::SimdTest
- compareto
: gmx_help_make_index_group
- compareVectorEq()
: gmx::test::SimdBaseTest
- compareVectorRealUlp()
: gmx::test::SimdBaseTest
- compareVectors()
: gmx::anonymous_namespace{hostallocator.cpp}::HostMemoryTest< T >
- compile()
: gmx::SelectionCompiler
, gmx::SelectionCollection
- completeDefaultFileName()
: gmx::FileNameOptionManager
- completeFileName()
: gmx::FileNameOptionManager
- completionWriter_
: gmx::CommandLineHelpContext::Impl
- complexGridSize
: PmeGpuGridParams
- complexGridSizePadded
: PmeGpuGridParams
- compressed_symmetric
: gmx_sparsematrix
- compute_units
: gmx_device_info_t
- computeAverageCoveredFraction()
: gmx::internal::SelectionData
- computeStorageLocation()
: gmx::internal::AnalysisDataStorageImpl
- computeVirial_
: gmx::ForceWithVirial
- consoleOptionsFormatter()
: gmx::HelpWriterContext::Impl::SharedState
- const_iterator
: gmx::ArrayRef< T >
- const_pointer
: gmx::Allocator< T, AllocationPolicy >
, gmx::ArrayRef< T >
- const_reference
: gmx::Allocator< T, AllocationPolicy >
, gmx::ArrayRef< T >
- const_reverse_iterator
: gmx::ArrayRef< T >
- constants
: PmeGpuKernelParamsBase
- constArrayRefFromArray()
: gmx::ArrayRef< T >
- constraintCommunicationRange
: DomdecOptions
- construct()
: gmx::Allocator< T, AllocationPolicy >
- ConstViewType
: gmx::anonymous_namespace{hostallocator.cpp}::HostMemoryTest< T >
- contains()
: gmx::test::CommandLine
- context
: gmx_device_runtime_data_t
- continuationOptions
: MdrunOptions
- ContinuationOptions()
: ContinuationOptions
- convert()
: gmx::OptionValueConverterSimple< OutType >
- ConverterType
: gmx::OptionStorageTemplateSimple< T >
- convertOptionValue()
: gmx::SelectionOptionManager
- convertValue()
: anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage
, gmx::OptionStorageTemplate< T >
, gmx::AbstractOptionStorage
- convolveForce
: gmx::BiasParams
- coord_unit
: t_pullcoord
- CoordData()
: gmx::CorrelationBlockData::CoordData
- coordData()
: gmx::CorrelationBlockData
- coordinates()
: gmx::Selection
, gmx::test::anonymous_namespace{pmegathertest.cpp}::AtomSizedData
- coordinates_
: gmx::test::BiasTest
- coordsel
: t_UmbrellaOptions
- coordsendbuf
: t_gmx_IMD
- coordState()
: gmx::BiasState
- CoordState()
: gmx::CoordState
- coordValue
: gmx::GridPoint
, gmx::CoordState
- copyAllOutputs
: PmeGpuSettings
- copyContents()
: gmx::AbstractAnalysisArrayData
- copyright()
: gmx::BinaryInformationSettings
- copyValues()
: gmx::anonymous_namespace{pargs.cpp}::OptionsAdapter
- core_pinning_offset
: gmx_hw_opt_t
- core_pinning_stride
: gmx_hw_opt_t
- coreBits
: gmx::anonymous_namespace{cpuinfo.cpp}::ApicIdLayout
- coreRankInSocket
: gmx::HardwareTopology::LogicalProcessor
, gmx::CpuInfo::LogicalProcessor
- cores
: gmx::HardwareTopology::Socket
- cORF
: t_mdatoms
- CorrelationBlockData()
: gmx::CorrelationBlockData
- CorrelationGrid()
: gmx::CorrelationGrid
- correlationIntegral()
: gmx::CorrelationBlockData
- CorrelationTensor()
: gmx::CorrelationTensor
- coulomb_tab
: cu_nbparam
- coulomb_tab_climg2d
: cl_nbparam
- coulomb_tab_scale
: cl_nbparam
, cl_nbparam_params
, cu_nbparam
- coulomb_tab_texobj
: cu_nbparam
- count
: pme_setup_t
, gmx_ana_pos_t
, gmx::SelectionOptionManager::Impl::SelectionRequest
- countArray_
: gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData
- counter_type
: gmx::ThreeFry2x64General< rounds, internalCounterBits >
- coveredFraction()
: gmx::Selection
- coverRadius()
: gmx::BiasParams
- covers()
: gmx::Grid
- cRealNodeName
: gmx::test::TestReferenceChecker::Impl
- create()
: gmx::Variant
, gmx::SelectionParserParameter
, gmx::anonymous_namespace{cmdlineprogramcontext.cpp}::DefaultExecutableEnvironment
, gmx::SelectionParserParameter
, gmx::Variant
- createArray()
: gmx::KeyValueTreeValueBuilder
- createCalculation()
: gmx::PositionCalculationCollection
, gmx::PositionCalculationCollection::Impl
- createCalculationFromEnum()
: gmx::PositionCalculationCollection
- createEmpty()
: gmx::SelectionLocation
- createEntry()
: gmx::test::TestReferenceChecker::Impl
- createExpr()
: gmx::SelectionParserValue
- createFileMatcher()
: gmx::test::TextFileMatch
, gmx::test::IFileMatcherSettings
, gmx::test::NoContentsMatch
- createFromExpression()
: gmx::SelectionParserParameter
- createInteger()
: gmx::SelectionParserValue
- createIntegerRange()
: gmx::SelectionParserValue
- createList()
: gmx::SelectionParserParameter
, gmx::SelectionParserValue
- createMatcher()
: gmx::test::ExactTextMatch
, gmx::test::ConfMatch
, gmx::test::XvgMatch
, gmx::test::ITextBlockMatcherSettings
, gmx::test::NoTextMatch
- createModule()
: gmx::test::AbstractTrajectoryAnalysisModuleTestFixture
, gmx::ICommandLineOptionsModule
, gmx::test::TrajectoryAnalysisModuleTestFixture< ModuleInfo >
, gmx::TrajectoryAnalysisCommandLineRunner
- createModuleHelpTopic()
: gmx::CommandLineHelpModule
- createObject()
: gmx::KeyValueTreeValueBuilder
- createPosition()
: gmx::SelectionParserValue
- createReal()
: gmx::SelectionParserValue
- createRealRange()
: gmx::SelectionParserValue
- createStorage()
: gmx::AbstractOption
, gmx::AbstractOptionSection
- createString()
: gmx::SelectionParserValue
- cSequenceLengthName
: gmx::test::TestReferenceChecker::Impl
- cSequenceType
: gmx::test::TestReferenceChecker::Impl
- cStringNodeName
: gmx::test::TestReferenceChecker::Impl
- cTC
: t_mdatoms
- cU1
: t_mdatoms
- cU2
: t_mdatoms
- CubicSplineTable()
: gmx::CubicSplineTable
- cUCharNodeName
: gmx::test::TestReferenceChecker::Impl
- cUInt64NodeName
: gmx::test::TestReferenceChecker::Impl
- cum
: t_UmbrellaWindow
- current
: PmeGpuKernelParamsBase
- currentFlags
: PmeGpuSettings
- currentFrame()
: gmx::AnalysisDataStorage
- currentFrame_
: gmx::internal::AnalysisDataHandleImpl
- currentLifetimes_
: gmx::AnalysisDataLifetimeModule::Impl
- currentLocation
: gmx_sel_lexer_t
- currentOption_
: gmx::OptionsAssigner::Impl
- currentPosition()
: gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator
- currentSection()
: gmx::OptionsAssigner::Impl
- currentSelection()
: gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator
- currentTopic()
: gmx::HelpManager::Impl
- currentTopicAsString()
: gmx::HelpManager::Impl
- currentValueCount_
: gmx::OptionsAssigner::Impl
- currentValuesSelected()
: gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator
- currIndex_
: gmx::AnalysisDataModuleManager::Impl
- currsize
: gmx_sel_mempool_t
- currValues_
: gmx::AnalysisDataDisplacementModule::Impl
- cutoff
: t_methoddata_distance
- cVCM
: t_mdatoms
- cVectorType
: gmx::test::TestReferenceChecker::Impl
- cycles
: gmx_pme_comm_vir_ene_t
, pme_setup_t
- cyclesLastCpu
: BalanceRegion
- cyclesOpenCpu
: BalanceRegion