- r -
- range()
: gmx::AnalysisHistogramSettingsInitializer
- RangeError()
: gmx::RangeError
- rbegin()
: gmx::ArrayRef< T >
- RdfModuleData()
: gmx::analysismodules::anonymous_namespace{rdf.cpp}::RdfModuleData
- readAll()
: gmx::TextReader
- readDouble()
: gmx::test::TestReferenceChecker
- readFileToString()
: gmx::TextReader
- readFloat()
: gmx::test::TestReferenceChecker
- reading()
: gmx::ISerializer
- readInt64()
: gmx::test::TestReferenceChecker
- readInteger()
: gmx::test::TestReferenceChecker
- readLine()
: gmx::TextReader
, gmx::TextInputStream
, gmx::StandardInputStream
, gmx::TextInputFile
, gmx::StringInputStream
- readNextFrame()
: gmx::TrajectoryAnalysisRunnerCommon
, gmx::test::EnergyFrameReader
, gmx::test::TrajectoryFrameReader
- readString()
: gmx::test::TestReferenceChecker
- readUChar()
: gmx::test::TestReferenceChecker
- readWriteFlags()
: gmx::FileNameOption
- redirectStringToStdin()
: gmx::test::StdioTestHelper
- refId()
: gmx::SelectionPosition
- refIds()
: gmx::Selection
- refIndex()
: gmx::AnalysisNeighborhoodPair
- refreshMassesAndCharges()
: gmx::internal::SelectionData
- refreshName()
: gmx::internal::SelectionData
- Regex()
: gmx::Regex
- registerAnalysisDataset()
: gmx::TrajectoryAnalysisModule
- registerAwhWithPull()
: gmx::Awh
- registerBasicDataset()
: gmx::TrajectoryAnalysisModule
- registerModule()
: gmx::CommandLineModuleManager
, gmx::TrajectoryAnalysisCommandLineRunner
- registerModuleDirect()
: gmx::ICommandLineOptionsModule
- registerModuleFactory()
: gmx::ICommandLineOptionsModule
- registerOption()
: gmx::SelectionOptionManager
- registerSubTopic()
: gmx::AbstractCompositeHelpTopic
- reinitializeOnSpawnedThread()
: gmx::Mdrunner
- relativeToleranceAsFloatingPoint()
: gmx::test::FloatingPointTolerance
- relativeToleranceAsPrecisionDependentUlp()
: gmx::test::FloatingPointTolerance
- relativeToleranceAsUlp()
: gmx::test::FloatingPointTolerance
- removeCalculation()
: gmx::PositionCalculationCollection::Impl
- removeFiles()
: gmx::test::TestFileManager::Impl
- removeTerminatingLineFeed()
: gmx::anonymous_namespace{exceptions.cpp}::MessageWriterString
- rend()
: gmx::ArrayRef< T >
- RepeatingOptionSection()
: gmx::RepeatingOptionSection< T >
- RepeatingOptionSectionHandle()
: gmx::RepeatingOptionSectionHandle< T >
- RepeatingOptionSectionStorage()
: gmx::RepeatingOptionSectionStorage< T >
- replaceLinks()
: gmx::HelpWriterContext::Impl
- representativeItem()
: gmx::UnionFinder
- representativeValue()
: gmx::MappedUnionFinder
- requestOptionDelayedParsing()
: gmx::SelectionOptionManager
- RequestsClearer()
: gmx::SelectionOptionManager::Impl::RequestsClearer
- requestStorage()
: gmx::AbstractAnalysisData
, gmx::AnalysisDataStorage
- requestStorageInternal()
: gmx::AbstractAnalysisData
- requestUnsetRequiredOptions()
: gmx::SelectionOptionManager::Impl
- required()
: gmx::OptionTemplate< T, U >
- requiredTopologyInfoForType()
: gmx::PositionCalculationCollection
- requiredTopologyProperties()
: gmx::SelectionCollection
, gmx::SelectionTreeElement
- requiredTopologyPropertiesForPositionType()
: gmx::SelectionCollection::Impl
- requiresIndexGroups()
: gmx::SelectionCollection
, gmx::SelectionTreeElement
- resampleDoubleBinWidth()
: gmx::AbstractAverageHistogram
- reserve()
: anonymous_namespace{evaluate.cpp}::MempoolGroupReserver
, gmx::MDAtoms
, gmx::internal::EnumIndexStore< EnumType >
, gmx::IOptionValueStore< T >
, gmx::OptionValueStoreNull< T >
, anonymous_namespace{evaluate.cpp}::MempoolSelelemReserver
- reset()
: gmx::ExponentialDistribution< RealType >
, GpuRegionTimerImpl< framework >
, GpuRegionTimerWrapper< framework >
, GpuRegionTimerImpl< GpuFramework::OpenCL >
, gmx::GammaDistribution< RealType >
, gmx::NormalDistribution< RealType >
, gmx::TabulatedNormalDistribution< RealType, tableBits >
, gmx::UniformIntDistribution< IntType >
, gmx::UniformRealDistribution< RealType >
, gmx::AnalysisNeighborhoodSearch
, gmx::PrivateImplPointer< Impl >
- resize()
: gmx::MDAtoms
- resolveExternalGroups()
: gmx::SelectionCollection::Impl
- resolveIndexGroupReference()
: gmx::SelectionTreeElement
- restart()
: gmx::ThreeFry2x64General< rounds, internalCounterBits >
- restoreFromHistory()
: gmx::CoordState
, gmx::CorrelationBlockData
, gmx::CorrelationTensor
, gmx::HistogramSize
, gmx::BiasState
- restoreOriginalPositions()
: gmx::internal::SelectionData
- restoreStateFromHistory()
: gmx::CorrelationGrid
, gmx::Awh
, gmx::Bias
- result()
: gmx::anonymous_namespace{exceptions.cpp}::MessageWriterString
, gmx::anonymous_namespace{helpwritercontext.cpp}::WrapperToString
, gmx::anonymous_namespace{helpwritercontext.cpp}::WrapperToVector
- rootChecker()
: gmx::test::CommandLineTestBase
, gmx::test::TestReferenceData
- rootElement()
: gmx::internal::SelectionData
- RootHelpTopic()
: gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::RootHelpTopic
- rootObject()
: gmx::KeyValueTreeBuilder
- rootSection()
: gmx::Options
- rotateBuffer()
: gmx::internal::AnalysisDataStorageImpl
- roundRange()
: gmx::AnalysisHistogramSettingsInitializer
- rowCount()
: gmx::AbstractAnalysisArrayData
- RstParagraphIterator()
: gmx::RstParagraphIterator
- rules()
: gmx::KeyValueTreeTransformRulesScoped
- run()
: gmx::CommandLineModuleManager
, gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule
, gmx::ICommandLineOptionsModule
, gmx::ICommandLineModule
, anonymous_namespace{legacymodules.cpp}::ObsoleteToolModule
, gmx::CommandLineHelpModule
- runAsMain()
: gmx::TrajectoryAnalysisCommandLineRunner
, gmx::ICommandLineOptionsModule
- runAsMainCMain()
: gmx::CommandLineModuleManager
- runAsMainCMainWithSettings()
: gmx::CommandLineModuleManager
- runAsMainSingleModule()
: gmx::CommandLineModuleManager
- runExitsNormallyTest()
: gmx::test::MultiSimTest
- runFirstMdrun()
: gmx::test::TerminationHelper
- runMaxhTest()
: gmx::test::MultiSimTest
- runModuleDirect()
: gmx::test::CommandLineTestHelper
- runModuleFactory()
: gmx::test::CommandLineTestHelper
- runSecondMdrun()
: gmx::test::TerminationHelper
- runSecondMdrunWithNoAppend()
: gmx::test::TerminationHelper
- runTest()
: gmx::test::anonymous_namespace{pmesolvetest.cpp}::PmeSolveTest
, gmx::test::anonymous_namespace{pmesplinespreadtest.cpp}::PmeSplineAndSpreadTest
, gmx::test::anonymous_namespace{pmebsplinetest.cpp}::PmeBSplineModuliTest
, gmx::anonymous_namespace{hostallocator.cpp}::HostMemoryTest< T >
, anonymous_namespace{shake.cpp}::ShakeTest
, anonymous_namespace{grompp.cpp}::GromppTest
, gmx::test::anonymous_namespace{pmegathertest.cpp}::PmeGatherTest
, gmx::test::AbstractTrajectoryAnalysisModuleTestFixture