domdec Directory Reference

Directory dependency graph for domdec:

Directories
directory	tests

Files
file	atomdistribution.cpp
file	atomdistribution.h
file	box.cpp
file	box.h
file	cellsizes.cpp
file	cellsizes.h
file	collect.cpp
file	collect.h
	Declares functions to collect state data to the master rank.
file	distribute.cpp
file	distribute.h
file	dlb.cpp
file	dlb.h
	This file declares functions to interact with the dynamic load balancing machinery.
file	dlbtiming.cpp
file	dlbtiming.h
	This file declares functions for timing the load imbalance due to domain decomposition.
file	domdec.cpp
file	domdec.h
	This file declares functions for mdrun to call to manage the details of its domain decomposition.
file	domdec_constraints.cpp
file	domdec_constraints.h
file	domdec_internal.h
file	domdec_network.cpp
file	domdec_network.h
	This file declares functions for (mostly) the domdec module to use MPI functionality.
file	domdec_setup.cpp
file	domdec_specatomcomm.cpp
file	domdec_specatomcomm.h
file	domdec_struct.h
	Declares structures related to domain decomposition.
file	domdec_topology.cpp
file	domdec_vsite.cpp
file	domdec_vsite.h
file	dump.cpp
file	dump.h
file	ga2la.cpp
file	ga2la.h
	Defines structures and functions for mapping from global to local atom indices. The functions are performance critical and should be inlined.
file	hashedmap.h
	Defines structures and functions for mapping from keys to entries indices using a hash table. The functions are performance critical and should be inlined.
file	localatomset.cpp
file	localatomset.h
	Declares gmx::LocalAtomSet.
file	localatomsetdata.cpp
file	localatomsetdata.h
file	localatomsetmanager.cpp
file	localatomsetmanager.h
	Declares gmx::LocalAtomSetManager.
file	partition.cpp
file	partition.h
	This file declares functions for mdrun to call to make a new domain decomposition, and check it.
file	redistribute.cpp
file	redistribute.h
file	utility.cpp
file	utility.h