Here is a list of all documented class members with links to the class documentation for each member:
- s -
- s
: em_state_t
, gmx_ana_selvalue_t
- s_globalOutputTempDirectory
: gmx::test::TestFileManager::Impl
- s_hasCompatibleGpus
: gmx::test::anonymous_namespace{pmetest.cpp}::PmeTest
- s_inputDirectory
: gmx::test::TestFileManager::Impl
- s_nPoints
: gmx::test::SimdBaseTest
- s_workMemSize_
: gmx::test::anonymous_namespace{simd_floatingpoint_util.cpp}::SimdFloatingpointUtilTest
- sampleCoordAndPmf()
: gmx::BiasState
- sampleCount()
: gmx::AnalysisDataAverageModule
, gmx::AnalysisDataFrameAverager
- samplePmf()
: gmx::PointState
- sampleProbabilityWeights()
: gmx::BiasState
- sampleUmbrellaGridpoint()
: gmx::CoordState
- SasaModuleData()
: gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData
- saveEdsamPointer()
: gmx::Constraints
- sbase
: gmx_ana_poscalc_t
- sc
: gmx_sel_lexer_t
- sc_
: gmx::SelectionCollection::Impl
- scaleAll()
: gmx::AbstractAverageHistogram
- scaleAllByVector()
: gmx::AbstractAverageHistogram
- scaleBox()
: EwaldBoxZScaler
- scaleInternalToUserInput()
: gmx::DimParams
- scaleSingle()
: gmx::AbstractAverageHistogram
- scaleTarget()
: gmx::PointState
- scaleUserInputToInternal()
: gmx::DimParams
- scopedTransform()
: gmx::IKeyValueTreeTransformRules
- SearchMode
: gmx::AnalysisNeighborhood
- Section
: gmx::OptionsAssigner::Impl
- sectionDepth_
: gmx::HelpWriterContext::Impl
- SectionList
: gmx::internal::OptionSectionImpl
- SectionPointer
: gmx::internal::OptionSectionImpl
- sectionStack_
: gmx::OptionsAssigner::Impl
- seed
: gmx_repl_ex
, gmx::ThreeFry2x64General< rounds, internalCounterBits >
- seed_
: gmx::test::BiasTest
- sel
: gmx_ana_selcollection_t
- select_on_container_copy_construction()
: gmx::HostAllocationPolicy
- selectDataSet()
: gmx::AnalysisDataHandle
, gmx::AnalysisDataStorageFrame
- selected()
: gmx::SelectionPosition
- Selection()
: gmx::Selection
- SelectionCollection()
: gmx::SelectionCollection
- selectionCollection()
: gmx::AnalysisDataPlotSettings
- SelectionCompiler
: gmx::SelectionCollection
, gmx::SelectionCompiler
- SelectionData()
: gmx::internal::SelectionData
- SelectionEvaluator
: gmx::SelectionCollection
- SelectionFileOption()
: gmx::SelectionFileOption
- SelectionFileOptionInfo()
: gmx::SelectionFileOptionInfo
- SelectionFileOptionStorage()
: gmx::SelectionFileOptionStorage
- SelectionOption()
: gmx::SelectionOption
- SelectionOptionBehavior()
: gmx::SelectionOptionBehavior
- SelectionOptionInfo()
: gmx::SelectionOptionInfo
- SelectionOptionManager()
: gmx::SelectionOptionManager
- SelectionOptionStorage
: gmx::Selection
, gmx::SelectionOption
, gmx::SelectionOptionManager
, gmx::SelectionOptionStorage
- SelectionParserSymbolIterator
: gmx::SelectionParserSymbolTable
, gmx::SelectionParserSymbolIterator
- SelectionParserSymbolTable
: gmx::SelectionParserSymbolIterator
, gmx::SelectionParserSymbolTable
, gmx::SelectionParserSymbol
- SelectionPosition()
: gmx::SelectionPosition
- SelectionRequest()
: gmx::SelectionOptionManager::Impl::SelectionRequest
- selections_
: gmx::TrajectoryAnalysisModuleData::Impl
- selectionText()
: gmx::internal::SelectionData
, gmx::Selection
- SelectionTopologyProperties()
: gmx::SelectionTopologyProperties
- SelectionTreeElement()
: gmx::SelectionTreeElement
- SelectionTypeOption
: gmx::SelectionCollection
- selectSingleFromArray()
: gmx::AnalysisNeighborhoodPositions
- SelelemTemporaryValueAssigner()
: anonymous_namespace{evaluate.cpp}::SelelemTemporaryValueAssigner
- SelMethodEvalContext()
: gmx::SelMethodEvalContext
- sendAtom
: gmx_domdec_specat_comm_t
- sendEnergies()
: gmx::MimicCommunicator
- sendForces()
: gmx::MimicCommunicator
- sendInitData()
: gmx::MimicCommunicator
- sendxbuf
: t_gmx_IMD
- seqIndex_
: gmx::test::TestReferenceChecker::Impl
- set
: gmx::SimulationSignal
, gmx::FlagsTemplate< FlagType >
- set_poscoll
: gmx_ana_selmethod_t
- setAbsTol()
: gmx::test::SimdBaseTest
- setAcceptBooleanNoPrefix()
: gmx::OptionsAssigner
- setAllBlocksSizeOne()
: gmx::RangePartitioning
- setAllowedValueCount()
: gmx::SelectionOptionStorage
- setAverageDataSets()
: gmx::AnalysisDataAverageModule
- setCalculateAtomArea()
: gmx::SurfaceAreaCalculator
- setCalculateSurfaceDots()
: gmx::SurfaceAreaCalculator
- setCalculateVolume()
: gmx::SurfaceAreaCalculator
- setColumnCount()
: gmx::AbstractAnalysisData
, gmx::AnalysisData
, gmx::AbstractAnalysisArrayData
, gmx::AnalysisDataFrameLocalData< ValueType >
, gmx::AnalysisDataFrameAverager
, gmx::test::AnalysisDataTestInput
- setColumnFirstLineOffset()
: gmx::TextTableFormatter
- setConstraints()
: gmx::Constraints
- setContinuationChar()
: gmx::TextLineWrapperSettings
- setCoordValue()
: gmx::BiasState
, gmx::CoordState
- setCumulative()
: gmx::AnalysisDataLifetimeModule
- setCutoff()
: gmx::AnalysisNeighborhood
- setDataSetCount()
: gmx::AbstractAnalysisData
, gmx::AnalysisData
, gmx::AnalysisDataFrameLocalData< ValueType >
- setDatasetTolerance()
: gmx::test::AbstractTrajectoryAnalysisModuleTestFixture
- setDebugLevel()
: gmx::SelectionCollection
- setDefaultNiceLevel()
: gmx::CommandLineModuleSettings
- setDefaultTolerance()
: gmx::test::CommandLineTestBase
, gmx::test::TestReferenceChecker
- setDefaultValue()
: gmx::OptionStorageTemplate< T >
- setDefaultValueIfSet()
: gmx::OptionStorageTemplate< T >
- setDescription()
: gmx::AbstractOption
- setDisplayName()
: gmx::CommandLineProgramContext
- setDotCount()
: gmx::SurfaceAreaCalculator
- setDynamicMask()
: gmx::SelectionOptionInfo
- setError()
: gmx::AnalysisDataValue
- setErrorsAsSeparateColumn()
: gmx::AbstractPlotModule
- setEvaluateForces()
: gmx::Selection
, gmx::SelectionOptionInfo
- setEvaluateVelocities()
: gmx::Selection
, gmx::SelectionOptionInfo
- setExpectedDisplayName()
: gmx::test::MockModule
- setFileName()
: gmx::AbstractPlotModule
, gmx::analysismodules::anonymous_namespace{select.cpp}::IndexFileWriterModule
- setFirstColumnIndent()
: gmx::TextTableFormatter
- setFirstLineIndent()
: gmx::TextLineWrapperSettings
- setFlag()
: gmx::AbstractOption
, gmx::AbstractOptionStorage
, gmx::TrajectoryAnalysisSettings
- setFlags()
: gmx::internal::SelectionData
, gmx::TrajectoryAnalysisSettings
- setFoldLastColumnToNextLine()
: gmx::TextTableFormatter
- setFrameFlags()
: gmx::TrajectoryAnalysisSettings
- setFreeEnergy()
: gmx::PointState
- setFromHistory()
: gmx::PointState
- setGlobalOutputTempDirectory()
: gmx::test::TestFileManager
- setHelpText()
: gmx::CommandLineHelpWriter
, gmx::ICommandLineOptionsModuleSettings
, gmx::TrajectoryAnalysisSettings
- setHistogramSize()
: gmx::HistogramSize
- setIndent()
: gmx::TextLineWrapperSettings
- setIndexGroups()
: gmx::SelectionCollection
- setIndicesInDomainDecomposition()
: gmx::LocalAtomSetManager
- setInfo()
: gmx::GromacsException
- setInitialReferenceWeightHistogram()
: gmx::PointState
- setInputDataDirectory()
: gmx::test::TestFileManager
- setInputFile()
: gmx::test::CommandLineTestBase
- setInputFileContents()
: gmx::test::CommandLineTestHelper
, gmx::test::CommandLineTestBase
- setInputLines()
: gmx::test::InteractiveTestHelper
- setInputRedirector()
: gmx::FileNameOptionManager
- setKeepFinalSpaces()
: gmx::TextLineWrapperSettings
- setKnownIssues()
: gmx::CommandLineHelpWriter
- setLastNewline()
: gmx::test::InteractiveTestHelper
- setLegend()
: gmx::AbstractPlotModule
- setLineLength()
: gmx::TextLineWrapperSettings
- setLogPmfSum()
: gmx::PointState
- setMaxTime()
: gmx::AnalysisDataDisplacementModule
- setMaxValueCount()
: gmx::AbstractOptionStorage
- setMinValueCount()
: gmx::AbstractOptionStorage
- setMode()
: gmx::AnalysisNeighborhood
- setModuleDisplayName()
: gmx::CommandLineHelpContext
- setModuleOverride()
: gmx::CommandLineHelpModule
- setMSDHistogram()
: gmx::AnalysisDataDisplacementModule
- setMultipoint()
: gmx::AbstractAnalysisData
, gmx::AnalysisData
- setName()
: gmx::SelectionTreeElement
- setOmitX()
: gmx::AbstractPlotModule
- setOnlyAtoms()
: gmx::SelectionOptionInfo
- setOnlyStatic()
: gmx::SelectionOptionInfo
- setOptionsModuleSettings()
: gmx::TrajectoryAnalysisSettings
- setOriginalId()
: gmx::Selection
- setOutputFile()
: gmx::test::CommandLineTestHelper
, gmx::test::CommandLineTestBase
- setOutputPosType()
: gmx::SelectionCollection
- setOutputRedirector()
: gmx::CommandLineHelpModule
, gmx::CommandLineModuleManager
- setOutputTempDirectory()
: gmx::test::TestFileManager
- setPartialWeightAndCount()
: gmx::PointState
- setPBC()
: gmx::TrajectoryAnalysisSettings
- setPlainOutput()
: gmx::AbstractPlotModule
- setPoint()
: gmx::AnalysisDataHandle
- setPoints()
: gmx::AnalysisDataHandle
- setPreviousBlockIndex()
: gmx::CorrelationBlockData
- setQuiet()
: gmx::CommandLineModuleManager
- setRadii()
: gmx::SurfaceAreaCalculator
- setRange()
: gmx::test::SimdBaseTest
- setReferencePosType()
: gmx::SelectionCollection
- setReplacement()
: gmx::HelpWriterContext
- setRmPBC()
: gmx::TrajectoryAnalysisSettings
- setRowCount()
: gmx::AbstractAnalysisArrayData
- setScaleFactor()
: gmx::DoubleOptionInfo
, gmx::FloatOptionInfo
, gmx::DoubleOptionStorage
, gmx::FloatOptionStorage
- setSearchPathFromEnv()
: gmx::DataFileFinder
- setSelectionCollection()
: gmx::AnalysisDataPlotSettings
- setSelectionFlag()
: gmx::SelectionOptionStorage
- setSettings()
: gmx::AbstractPlotModule
- setShowHidden()
: gmx::CommandLineHelpContext
, gmx::CommandLineHelpModule
, gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::OptionsFilter
- setSignal()
: gmx::CheckpointHandler
, gmx::ResetHandler
, gmx::StopHandler
- setSignals()
: gmx::SimulationSignaller
- setSingleModule()
: gmx::CommandLineModuleManager
- setStoreIsSet()
: gmx::AbstractOption
- setSubtitle()
: gmx::AbstractPlotModule
- setTargetConstantWeight()
: gmx::PointState
- setTargetToZero()
: gmx::PointState
- setTimeUnit()
: gmx::AnalysisDataPlotSettings
, gmx::TimeUnitManager
, gmx::TimeUnitBehavior
- setTimeUnitFromEnvironment()
: gmx::TimeUnitBehavior
- setTimeUnitStore()
: gmx::TimeUnitBehavior
- settings
: PmeGpu
, gmx::AbstractAverageHistogram
, gmx::AnalysisDataSimpleHistogramModule
, gmx::AnalysisDataWeightedHistogramModule
, gmx::AnalysisDataBinAverageModule
, gmx::anonymous_namespace{helpwritercontext.cpp}::IWrapper
, gmx::anonymous_namespace{helpwritercontext.cpp}::WrapperToString
, gmx::anonymous_namespace{helpwritercontext.cpp}::WrapperToVector
, gmx::TextLineWrapper
- settings_
: gmx::internal::BasicHistogramImpl
- setTitle()
: gmx::AbstractPlotModule
- setTolerance()
: gmx::test::anonymous_namespace{splinetable.cpp}::SplineTableTest< T >
- setTopology()
: gmx::PositionCalculationCollection
, gmx::SelectionCollection
, gmx::test::AbstractTrajectoryAnalysisModuleTestFixture
- setTopologyExclusions()
: gmx::AnalysisNeighborhood
- setTrajectory()
: gmx::test::AbstractTrajectoryAnalysisModuleTestFixture
- setTrimLeadingWhiteSpace()
: gmx::TextReader
- setTrimTrailingComment()
: gmx::TextReader
- setTrimTrailingWhiteSpace()
: gmx::TextReader
- setUlpTol()
: gmx::test::SimdBaseTest
- setUlpTolSingleAccuracy()
: gmx::test::SimdBaseTest
- SetUp()
: gmx::test::PmeTestEnvironment
, gmx::anonymous_namespace{shake.cpp}::ShakeTest
- setupArrayData()
: gmx::test::AnalysisDataTestFixture
- setupDataObject()
: gmx::test::AnalysisDataTestFixture
- setupGrompp()
: gmx::test::MimicTest
, gmx::test::BondedInteractionsTest
- setupMdrun()
: gmx::test::MimicTest
, gmx::test::BondedInteractionsTest
- SetUpTestCase()
: gmx::test::anonymous_namespace{pmegathertest.cpp}::PmeGatherTest
, gmx::test::anonymous_namespace{pmetest.cpp}::PmeTest
- setValue()
: gmx::AnalysisDataValue
, gmx::AnalysisDataStorageFrame
, gmx::KeyValueTreeValueBuilder
- setValueCount()
: gmx::AbstractOption
, gmx::SelectionOptionInfo
- setVariantValue()
: gmx::KeyValueTreeValueBuilder
- setVector()
: gmx::AbstractOption
- setWriteMask()
: gmx::AnalysisDataVectorPlotModule
- setWriteNorm()
: gmx::AnalysisDataVectorPlotModule
- setWriteX()
: gmx::AnalysisDataVectorPlotModule
- setWriteY()
: gmx::AnalysisDataVectorPlotModule
- setWriteZ()
: gmx::AnalysisDataVectorPlotModule
- setXAxis()
: gmx::AbstractAnalysisArrayData
- setXAxisIsTime()
: gmx::AbstractPlotModule
- setXAxisValue()
: gmx::AbstractAnalysisArrayData
- setXFormat()
: gmx::AbstractPlotModule
- setXLabel()
: gmx::AbstractPlotModule
- setXYMode()
: gmx::AnalysisNeighborhood
- setYFormat()
: gmx::AbstractPlotModule
- setYLabel()
: gmx::AbstractPlotModule
- sh_ewald
: cu_nbparam
, cl_nbparam
, cl_nbparam_params
- sh_lj_ewald
: cl_nbparam_params
, cu_nbparam
, cl_nbparam
- shared
: gmx::HardwareTopology::Cache
- sharedMemorySize
: KernelLaunchConfig
- SharedState()
: gmx::HelpWriterContext::Impl::SharedState
- shellCompletionWriter()
: gmx::CommandLineHelpContext
- shift_vec
: cu_atomdata
, cl_atomdata
- shift_vec_elem_size
: cl_atomdata
- shortDescription()
: gmx::CommandLineHelpModule
, gmx::ICommandLineModule
, gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule
, gmx::test::MockModule
, anonymous_namespace{legacymodules.cpp}::ObsoleteToolModule
- shouldBackup()
: gmx::CommandLineCommonOptionsHolder
- shouldBeQuiet()
: gmx::CommandLineCommonOptionsHolder
- shouldIgnore()
: gmx::test::TestReferenceChecker::Impl
- shouldIgnoreActualModule()
: gmx::CommandLineCommonOptionsHolder
- shouldNotifyImmediately()
: gmx::internal::AnalysisDataStorageImpl
- shouldShowHelp()
: gmx::CommandLineCommonOptionsHolder
- shouldShowHidden()
: gmx::CommandLineCommonOptionsHolder
- showHidden()
: gmx::CommandLineHelpContext
- sig
: gmx::SimulationSignal
- sigma
: t_UmbrellaWindow
- sigma3A
: t_mdatoms
- sigma3B
: t_mdatoms
- sigmaA
: t_mdatoms
- sigmaB
: t_mdatoms
- signalInterSim()
: gmx::SimulationSignaller
- signals_
: gmx::test::SignalTest
- signsDiffer()
: gmx::test::FloatingPointDifference
- sigSmoothIact
: t_UmbrellaOptions
- Simd4DBool()
: gmx::Simd4DBool
- Simd4Double()
: gmx::Simd4Double
- Simd4FBool()
: gmx::Simd4FBool
- Simd4Float()
: gmx::Simd4Float
- SimdArrayRef()
: gmx::internal::SimdArrayRef< T >
- SimdBaseTest()
: gmx::test::SimdBaseTest
- SimdDBool()
: gmx::SimdDBool
- SimdDIBool()
: gmx::SimdDIBool
- SimdDInt32()
: gmx::SimdDInt32
- SimdDouble()
: gmx::SimdDouble
- SimdFBool()
: gmx::SimdFBool
- SimdFIBool()
: gmx::SimdFIBool
- SimdFInt32()
: gmx::SimdFInt32
- SimdFloat()
: gmx::SimdFloat
- simdInternal_
: gmx::Simd4Double
, gmx::Simd4Float
, gmx::Simd4FBool
, gmx::SimdDouble
, gmx::SimdDBool
, gmx::SimdDIBool
, gmx::SimdFloat
, gmx::SimdFBool
, gmx::SimdFIBool
, gmx::SimdFInt32
, gmx::SimdDInt32
, gmx::Simd4DBool
- SimulationContext()
: gmx::SimulationContext
- SimulationInstabilityError()
: gmx::SimulationInstabilityError
- SimulationRunner()
: gmx::test::SimulationRunner
- SimulationSignal()
: gmx::SimulationSignal
- SimulationSignaller()
: gmx::SimulationSignaller
- singleModule_
: gmx::CommandLineModuleManager::Impl
- Site()
: gmx::Site
- sites()
: gmx::IRestraintPotential
- size
: gmx::HardwareTopology::Cache
, gmx_sel_mempool_block_t
, gmx::test::AnalysisDataTestInputPointSet
, HostInteractionList
, gmx::ArrayRefWithPadding< T >
, gmx::PaddedVector< T, Allocator >
, gmx::internal::SimdArrayRef< T >
, gmx::RangePartitioning::Block
, gmx::ArrayRef< T >
, gmx::KeyValueTreePath
, gmx::HashedMap< T >
- size_
: gmx::test::MultiSimTest
, gmx::PhysicalNodeCommunicator
- size_type
: gmx::ArrayRefWithPadding< T >
, gmx::internal::SimdArrayRef< T >
, gmx::ArrayRef< T >
- skipRemainingPairsForTestPosition()
: gmx::AnalysisNeighborhoodPairSearch
- skipUnknown()
: gmx::CommandLineParser
- skipUpdates()
: gmx::BiasParams
- slab_buffer
: gmx_enfrotgrp
- slab_center
: gmx_enfrotgrp
- slab_center_ref
: gmx_enfrotgrp
- slab_data
: gmx_enfrotgrp
- slab_first
: gmx_enfrotgrp
- slab_first_ref
: gmx_enfrotgrp
- slab_innersumvec
: gmx_enfrotgrp
- slab_last
: gmx_enfrotgrp
- slab_last_ref
: gmx_enfrotgrp
- slab_torque_v
: gmx_enfrotgrp
- slab_weights
: gmx_enfrotgrp
- socket
: t_gmx_IMD
- socketRankInMachine
: gmx::HardwareTopology::LogicalProcessor
, gmx::CpuInfo::LogicalProcessor
- sockets
: gmx::HardwareTopology::Machine
- sockfd
: IMDSocket
- solveMaxWorkGroupSize
: PmeGpuProgramImpl
- source_
: gmx::test::MockAnalysisDataModule::Impl
- spacing
: gmx::NumericalSplineTableInput
, pme_setup_t
, gmx::GridAxis
- span
: t_methoddata_insolidangle
- spas
: gmx_domdec_specat_comm_t
- spawnThreads()
: gmx::Mdrunner
- splineDataByPmeOrder
: gmx::test::anonymous_namespace{pmegathertest.cpp}::AtomSizedData
- splineDataSize
: PmeGpuSpecific
- splineDataSizeAlloc
: PmeGpuSpecific
- splineDerivatives
: gmx::test::anonymous_namespace{pmegathertest.cpp}::AtomAndPmeOrderSizedData
- splineValues
: gmx::test::anonymous_namespace{pmegathertest.cpp}::AtomAndPmeOrderSizedData
- splineValuesOffset
: PmeGpuGridParams
- splineValuesSize
: PmeGpuSpecific
- splineValuesSizeAlloc
: PmeGpuSpecific
- spost_
: gmx::SelectionCollection::Impl
- spreadTask
: InterdependentTask
- spreadWorkGroupSize
: PmeGpuProgramImpl
- sqrt_c6A
: t_mdatoms
- sqrt_c6B
: t_mdatoms
- staging
: PmeGpu
- standardDeviation()
: gmx::AnalysisDataAverageModule
- standardError()
: gmx::TextOutputFile
- standardOutput()
: gmx::anonymous_namespace{fileredirector.cpp}::DefaultOutputRedirector
, gmx::TextOutputFile
, gmx::IFileOutputRedirector
, gmx::test::TestFileOutputRedirector
- start()
: gmx::AnalysisHistogramSettingsInitializer
, gmx::OptionsAssigner
, gmx::internal::OptionSectionImpl
, gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::SynopsisFormatter
- start_time_stamp
: gmx_walltime_accounting
- startContext()
: gmx::MessageStringCollector
- startData()
: gmx::AnalysisData
- startDataStorage()
: gmx::AnalysisDataStorage
- startedFromCheckpoint
: ContinuationOptions
- startFormatting()
: gmx::TextTableFormatter::Impl::ColumnData
- startFrame()
: gmx::AnalysisDataStorage
, gmx::AnalysisDataHandle
, gmx::internal::AnalysisDataStorageFrameData
, gmx::AnalysisDataStorage
- startFrames()
: gmx::analysismodules::anonymous_namespace{sasa.cpp}::Sasa
, gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistance
, gmx::TrajectoryAnalysisModule
, gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf
- startIndex
: gmx::SelectionLocation
- startModuleExport()
: gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportReStructuredText
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportCompletion
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::IHelpExport
- startModuleGroupExport()
: gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportCompletion
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::IHelpExport
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportReStructuredText
- startOption()
: gmx::OptionsAssigner
- startPairSearch()
: gmx::AnalysisNeighborhoodSearch
- startParallelDataStorage()
: gmx::AnalysisDataStorage
- startReferenceData()
: gmx::test::MockAnalysisDataModule::Impl
- startReferenceFrame()
: gmx::test::MockAnalysisDataModule::Impl
- startSection()
: gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::OptionsListFormatter
, gmx::OptionsAssigner
, gmx::IOptionSectionStorage
, gmx::RepeatingOptionSectionStorage< T >
- startSelfPairSearch()
: gmx::AnalysisNeighborhoodSearch
- startSet()
: gmx::AbstractOptionStorage
- startSource()
: gmx::AbstractOptionStorage
- startupInfoFile()
: gmx::CommandLineCommonOptionsHolder
- stat
: gmx_device_info_t
- State
: gmx::AnalysisDataModuleManager::Impl
- state()
: gmx::Bias
- state_
: gmx::HelpWriterContext::Impl
, gmx::AnalysisDataModuleManager::Impl
- state_global
: gmx::Integrator
- StatePointer
: gmx::HelpWriterContext::Impl
- StaticAverageHistogram()
: gmx::anonymous_namespace{histogram.cpp}::StaticAverageHistogram
- StaticDataFrameHeaderChecker()
: gmx::test::anonymous_namespace{mock_datamodule.cpp}::StaticDataFrameHeaderChecker
- StaticDataPointsChecker()
: gmx::test::anonymous_namespace{mock_datamodule.cpp}::StaticDataPointsChecker
- StaticDataPointsStorageChecker()
: gmx::test::anonymous_namespace{mock_datamodule.cpp}::StaticDataPointsStorageChecker
- Status
: gmx::internal::AnalysisDataStorageFrameData
- statusWriter
: gmx_sel_lexer_t
- stddev()
: gmx::TabulatedNormalDistribution< RealType, tableBits >
, gmx::TabulatedNormalDistribution< RealType, tableBits >::param_type
, gmx::NormalDistribution< RealType >
, gmx::NormalDistribution< RealType >::param_type
- StdioTestHelper()
: gmx::test::StdioTestHelper
- step()
: gmx::TrajectoryFrame
, gmx_pme_comm_n_box_t
- stepchange
: t_UmbrellaOptions
- stepping()
: gmx::CpuInfo
- stepUpdateContrib
: t_UmbrellaOptions
- stop_cond
: gmx_pme_comm_vir_ene_t
- StopConditionSignal()
: gmx::StopConditionSignal
- StopConditionTime()
: gmx::StopConditionTime
- StopHandler()
: gmx::StopHandler
- stopHandlerBuilder
: gmx::Integrator
- stoppingAfterCurrentStep()
: gmx::StopHandler
- storage_
: gmx::AnalysisData::Impl
, gmx::SelectionOptionManager::Impl::SelectionRequest
, gmx::internal::OptionSectionImpl
, gmx::internal::BasicHistogramImpl
- storageImpl()
: gmx::internal::AnalysisDataStorageFrameData
- storageInitialized_
: gmx::internal::OptionSectionImpl
- storageLimit_
: gmx::internal::AnalysisDataStorageImpl
- store()
: gmx::OptionTemplate< T, U >
- storeAll()
: gmx::internal::AnalysisDataStorageImpl
- storeCount()
: gmx::OptionTemplate< T, U >
- storeIsSet()
: gmx::OptionTemplate< T, U >
- StorePointer
: gmx::OptionStorageTemplate< T >
- storeState()
: gmx::HistogramSize
, gmx::PointState
- storeVector()
: gmx::RepeatingOptionSection< T >
, gmx::OptionTemplate< T, U >
- stpsz
: anonymous_namespace{edsam.cpp}::t_eigvec
- str
: gmx::SelectionParserValue
- stream
: gmx_nbnxn_cuda_t
, KernelLaunchConfig
, gmx_nbnxn_ocl_t
, GpuBondedLists
- stream_
: gmx::TextReader::Impl
- stride
: t_methoddata_merge
- StringCompare()
: gmx::StringCompare
- StringFormatter()
: gmx::StringFormatter
- StringInputStream()
: gmx::StringInputStream
- StringKeywordMatchItem()
: anonymous_namespace{sm_keywords.cpp}::StringKeywordMatchItem
- StringOption()
: gmx::StringOption
- StringOptionInfo()
: gmx::StringOptionInfo
- StringOptionStorage()
: gmx::StringOptionStorage
, gmx::StringOption
- stringValue()
: gmx::SelectionParserValue
- subArray()
: gmx::ArrayRef< T >
- subblockStart()
: BiasOutputSetup
- SubgroupList
: gmx::internal::OptionSectionImpl::Group
- subgroups_
: gmx::internal::OptionSectionImpl::Group
- subRange()
: gmx::RangePartitioning
- subsections_
: gmx::internal::OptionSectionImpl
- substituteMarkupAndWrapToString()
: gmx::HelpWriterContext
- substituteMarkupAndWrapToVector()
: gmx::HelpWriterContext
- SubTopicList
: gmx::AbstractCompositeHelpTopic::Impl
- SubTopicMap
: gmx::AbstractCompositeHelpTopic::Impl
- subTopicMap_
: gmx::AbstractCompositeHelpTopic::Impl
- subTopics_
: gmx::AbstractCompositeHelpTopic::Impl
- sum_dg
: df_history_t
- sum_minvar
: df_history_t
- sum_variance
: df_history_t
- sum_weights
: df_history_t
- sumOverBlocksBlockSquareWeight()
: gmx::CorrelationBlockData
- sumOverBlocksBlockWeightBlockWeightX
: gmx::CorrelationBlockData::CoordData
- sumOverBlocksSquareBlockWeight()
: gmx::CorrelationBlockData
- SupportLevel
: gmx::CpuInfo
- supportLevel()
: gmx::HardwareTopology
- SupportLevel
: gmx::HardwareTopology
- supportLevel()
: gmx::CpuInfo
- SurfaceAreaCalculator()
: gmx::SurfaceAreaCalculator
- surfaceDist2_
: gmx::analysismodules::anonymous_namespace{rdf.cpp}::RdfModuleData
- svir_prev
: t_state
- swap()
: gmx::ArrayRef< T >
, gmx::ArrayRefWithPadding< T >
, gmx::PaddedVector< T, Allocator >
- swap_group()
: swap_group
- swapdim
: t_swap
- swapHistory
: ObservablesHistory
- SymbolMap
: gmx::SelectionParserSymbolTable::Impl
- SymbolPointer
: gmx::SelectionParserSymbolTable::Impl
- symbols_
: gmx::SelectionParserSymbolTable::Impl
- SymbolType
: gmx::SelectionParserSymbol
- symtab
: gmx_ana_selcollection_t
- syncSpreadGridD2H
: PmeGpuSpecific
- SynopsisFormatter()
: gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::SynopsisFormatter
- syntax
: gmx_ana_selmethod_help_t