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2019.6
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- a -
accum_m :
df_history_t
accum_m2 :
df_history_t
accum_p :
df_history_t
accum_p2 :
df_history_t
atnr :
gmx_ffparams_t
atoms :
gmx_moltype_t
awhHistory :
t_state
- b -
b :
t_pargs
,
gmx_ana_indexmap_t
baros_integral :
t_state
bEquil :
df_history_t
bFromDefaultDir :
gmx::DataFileInfo
bOrires :
t_mdatoms
box :
t_pbc
,
t_state
box_rel :
t_state
boxv :
t_state
bPerturbed :
t_mdatoms
bQM :
t_mdatoms
bSet :
t_pargs
bSourceLayout :
gmx::InstallationPrefixInfo
bStatic :
gmx_ana_indexmap_t
bVCMgrps :
t_mdatoms
- c -
c :
t_pargs
cACC :
t_mdatoms
cENER :
t_mdatoms
cFREEZE :
t_mdatoms
cg_gl :
t_state
cg_p :
t_state
cgs :
gmx_moltype_t
chargeA :
t_mdatoms
chargeB :
t_mdatoms
cmap_grid :
gmx_ffparams_t
compressed_symmetric :
gmx_sparsematrix
cORF :
t_mdatoms
cTC :
t_mdatoms
cU1 :
t_mdatoms
cU2 :
t_mdatoms
cVCM :
t_mdatoms
- d -
data :
gmx_sparsematrix
ddp_count :
t_state
ddp_count_cg_gl :
t_state
desc :
t_pargs
dfhist :
t_state
dim :
t_pbc
dir :
gmx::DataFileInfo
- e -
ekinstate :
t_state
energy :
gmx::PotentialPointData
ePBC :
t_pbc
ePBCDX :
t_pbc
excls :
gmx_moltype_t
- f -
f :
gmx_ana_pos_t
fbox_diag :
t_pbc
fep_state :
t_state
filenames :
t_filenm
flag :
t_filenm
flags :
t_state
fn :
t_filenm
force :
gmx::PotentialPointData
ftp :
t_filenm
fudgeQQ :
gmx_ffparams_t
functionType :
InteractionListHandle
functype :
gmx_ffparams_t
fvir_prev :
t_state
- g -
globalAtomEnd :
MoleculeBlockIndices
globalAtomStart :
MoleculeBlockIndices
globalResidueStart :
MoleculeBlockIndices
- h -
havePartiallyFrozenAtoms :
t_mdatoms
haveVsites :
t_mdatoms
hbox_diag :
t_pbc
hist :
t_state
homenr :
t_mdatoms
- i -
i :
t_pargs
iatoms :
InteractionListHandle
ilist :
gmx_moltype_t
index :
gmx_ana_index_t
invmass :
t_mdatoms
invMassPerDim :
t_mdatoms
iparams :
gmx_ffparams_t
is :
t_pargs
isize :
gmx_ana_index_t
isLocal :
gmx::SimulationSignal
- l -
lambda :
t_mdatoms
,
t_state
- m -
m :
gmx_ana_pos_t
mapb :
gmx_ana_indexmap_t
mapid :
gmx_ana_indexmap_t
massA :
t_mdatoms
massB :
t_mdatoms
massT :
t_mdatoms
max_cutoff2 :
t_pbc
mhbox_diag :
t_pbc
moleculeIndexStart :
MoleculeBlockIndices
- n -
n_at_lam :
df_history_t
nalloc :
gmx_sparsematrix
,
t_mdatoms
nalloc_index :
gmx_ana_index_t
nalloc_x :
gmx_ana_pos_t
name :
gmx_moltype_t
,
gmx::DataFileInfo
natoms :
t_state
nChargePerturbed :
t_mdatoms
ndata :
gmx_sparsematrix
ndim_ePBC :
t_pbc
needsMasses :
gmx::SelectionTopologyProperties
needsTopology :
gmx::SelectionTopologyProperties
nenergrp :
t_mdatoms
ngtc :
t_state
nhchainlength :
t_state
nhpres_vxi :
t_state
nhpres_xi :
t_state
nlambda :
df_history_t
nMassPerturbed :
t_mdatoms
nmol :
gmx_molblock_t
nnhpres :
t_state
nosehoover_vxi :
t_state
nosehoover_xi :
t_state
nPerturbed :
t_mdatoms
nr :
t_mdatoms
nrow :
gmx_sparsematrix
ntric_vec :
t_pbc
nTypePerturbed :
t_mdatoms
numAtomsPerMolecule :
MoleculeBlockIndices
- o -
opt :
t_filenm
option :
t_pargs
orgid :
gmx_ana_indexmap_t
- p -
path :
gmx::InstallationPrefixInfo
posres_xA :
gmx_molblock_t
posres_xB :
gmx_molblock_t
pres_prev :
t_state
ptype :
t_mdatoms
pull_com_prev_step :
t_state
- r -
r :
t_pargs
refid :
gmx_ana_indexmap_t
reppow :
gmx_ffparams_t
residueNumberStart :
MoleculeBlockIndices
rv :
t_pargs
- s -
set :
gmx::SimulationSignal
sig :
gmx::SimulationSignal
sigma3A :
t_mdatoms
sigma3B :
t_mdatoms
sigmaA :
t_mdatoms
sigmaB :
t_mdatoms
sqrt_c6A :
t_mdatoms
sqrt_c6B :
t_mdatoms
sum_dg :
df_history_t
sum_minvar :
df_history_t
sum_variance :
df_history_t
sum_weights :
df_history_t
svir_prev :
t_state
- t -
therm_integral :
t_state
Tij :
df_history_t
Tij_empirical :
df_history_t
tmass :
t_mdatoms
tmassA :
t_mdatoms
tmassB :
t_mdatoms
tric_shift :
t_pbc
tric_vec :
t_pbc
type :
gmx_ana_indexmap_t
,
gmx_molblock_t
,
t_pargs
typeA :
t_mdatoms
typeB :
t_mdatoms
- u -
u :
t_pargs
- v -
v :
t_pargs
,
t_state
,
gmx_ana_pos_t
value :
gmx::StaticLog2< n >
,
gmx::StaticLog2< 1 >
,
gmx::StaticLog2< 0 >
value_ :
gmx::RangePartitioning::Block::iterator
veta :
t_state
vol0 :
t_state
- w -
wl_delta :
df_history_t
wl_histo :
df_history_t
- x -
x :
t_state
,
gmx_ana_pos_t
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