- c -
- calc_bonded_reduction_mask()
: manage_threading.cpp
- calc_box_center()
: pbc.cpp
- calc_compact_unitcell_vertices()
: pbc.cpp
- calc_cumulatives()
: gmx_wham.cpp
- calc_disres_R_6()
: disre.h
- calc_ewaldcoeff_lj()
: ewald_utils.h
- calc_ewaldcoeff_q()
: ewald_utils.h
- calc_initial_lb_coeffs()
: pme.cpp
- calc_listed()
: listed_forces.cpp
, listed_forces.h
- calc_listed_lambda()
: listed_forces.cpp
, listed_forces.h
- calc_lll()
: ewald.cpp
- calc_next_lb_coeffs()
: pme.cpp
- calc_orires_dev()
: orires.h
- calc_pos_av_stddev()
: box.cpp
- calc_profile()
: gmx_wham.cpp
- calc_shifts()
: pbc.cpp
- calc_triclinic_images()
: pbc.cpp
- calc_z()
: gmx_wham.cpp
- calcBondedForces()
: listed_forces.cpp
- calcIntegratedAutocorrelationTimes()
: gmx_wham.cpp
- calcQuasiHarmonicEntropy()
: thermochemistry.h
- calcRotationalEntropy()
: thermochemistry.h
- calcSchlitterEntropy()
: thermochemistry.h
- calcTranslationalEntropy()
: thermochemistry.h
- calculateSimpleBond()
: bonded.cpp
, bonded.h
- calcVibrationalHeatCapacity()
: thermochemistry.h
- calcVibrationalInternalEnergy()
: thermochemistry.h
- calcZeroPointEnergy()
: thermochemistry.h
- can_use_base()
: poscalc.cpp
- canComputeOnGpu()
: gpu_testutils.cpp
, gpu_testutils.h
- canPerformGpuDetection()
: gpu_utils.cpp
, gpu_utils.h
- change_dd_cutoff()
: domdec.h
- check_alloc_index()
: domdec_topology.cpp
- check_assign_interactions_atom()
: domdec_topology.cpp
- check_atomtype()
: sm_simple.cpp
- check_box()
: pbc.cpp
- check_callbacks()
: selmethod.cpp
- check_charge()
: sm_simple.cpp
- check_exclusions_alloc()
: domdec_topology.cpp
- check_grid_jump()
: partition.cpp
, partition.h
- check_index_consistency()
: partition.cpp
- check_link()
: domdec_topology.cpp
- check_method()
: selmethod.cpp
- check_modifier()
: selmethod.cpp
- check_molecules()
: sm_simple.cpp
- check_multi_int()
: multisim.cpp
, multisim.h
- check_multi_int64()
: multisim.cpp
, multisim.h
- check_params()
: selmethod.cpp
- check_pdbinfo()
: sm_simple.cpp
- check_resource_division_efficiency()
: resourcedivision.cpp
, resourcedivision.h
- check_screw_box()
: utility.cpp
, utility.h
- check_swap_groups()
: swapcoords.cpp
- checkAndUpdateHardwareOptions()
: resourcedivision.h
, resourcedivision.cpp
- checkAndUpdateRequestedNumOpenmpThreads()
: resourcedivision.cpp
, resourcedivision.h
- checkForValidRankCountRequests()
: domdec_setup.cpp
, domdec_setup.h
- checkNumberOfBondedInteractions()
: partition.cpp
, partition.h
- checkReactionCoordinateCovered()
: gmx_wham.cpp
- checkRequiredWarpSize()
: pme_gpu_program_impl_ocl.cpp
- clear_dd_cycle_counts()
: dlbtiming.h
- clear_fshift()
: kernel_common.cpp
, kernel_common.h
- clear_idef()
: domdec_topology.cpp
- clear_pull_forces()
: pull.h
- clear_surface_points()
: sm_insolidangle.cpp
- clearBufferAll()
: kernel_common.cpp
- clearBufferFlagged()
: kernel_common.cpp
- clearCommSetupData()
: partition.cpp
- clearDDStateIndices()
: partition.cpp
- clearDeviceBufferAsync()
: devicebuffer_ocl.h
- clearForceBuffer()
: kernel_common.cpp
, kernel_common.h
- clearModificationBlock()
: hackblock.h
- cmap_dihs()
: bonded.h
, bonded.cpp
- cmp_bool()
: compare.h
- cmp_double()
: compare.h
- cmp_float()
: compare.h
- cmp_int()
: sm_same.cpp
, compare.h
- cmp_int64()
: compare.h
- cmp_range()
: params.cpp
- cmp_real()
: compare.h
- cmp_str()
: sm_same.cpp
, compare.h
- cmp_uc()
: compare.h
- cmp_us()
: compare.h
- combine_blocka()
: domdec_topology.cpp
- combine_idef()
: domdec_topology.cpp
- comm_box_frac()
: domdec_setup.cpp
, domdec_setup.h
- comm_cost_est()
: domdec_setup.cpp
- comm_dd_ns_cell_sizes()
: partition.cpp
- comm_pme_cost_vol()
: domdec_setup.cpp
- communicate_group_positions()
: groupcoord.h
- comp_state()
: state.h
- compact_unitcell_edges()
: pbc.cpp
- comparison_type()
: sm_compare.cpp
- comparison_type_str()
: sm_compare.cpp
- compartment_contains_atom()
: swapcoords.cpp
- complexConjugatMult()
: crosscorr.cpp
- compute_factors_cbtdihs()
: restcbt.cpp
, restcbt.h
- compute_factors_restangles()
: restcbt.h
, restcbt.cpp
- compute_factors_restrdihs()
: restcbt.cpp
, restcbt.h
- computeAverageForce()
: gmx_wham.cpp
- computeEnergy()
: bonded.h
- computeEnergyOrVirial()
: bonded.h
- computeVirial()
: bonded.h
- continue_pme_loadbal()
: pme_load_balancing.cpp
- continuing()
: cstringutil.h
- convert_const_values()
: params.cpp
- convert_int_real()
: sm_compare.cpp
- convert_real_int()
: sm_compare.cpp
- convert_value()
: params.cpp
- convert_values()
: params.cpp
- convertOldToNewGroupFormat()
: swapcoords.cpp
- copy_pullgrp_to_synthwindow()
: gmx_wham.cpp
- copyFromDeviceBuffer()
: devicebuffer_ocl.h
- copyIndicesToGroup()
: swapcoords.cpp
- copyModificationBlocks()
: hackblock.h
- copyPreprocessResidues()
: hackblock.h
- copyToDeviceBuffer()
: devicebuffer_ocl.h
- correct_box()
: pbc.cpp
- correct_box_elem()
: pbc.cpp
- count_excls()
: domdec_topology.cpp
- create_simple_base()
: poscalc.cpp
- create_subexpression_name()
: compiler.cpp
- create_synthetic_histo()
: gmx_wham.cpp
- cross_corr()
: crosscorr.cpp
, crosscorr.h
- cross_corr_low()
: crosscorr.cpp