Gromacs
2020-beta1
Main Page
Modules
Other Docs
Namespaces
Classes
Files
Examples
Class List
Class Index
Class Hierarchy
Class Members
All
Classes
Namespaces
Files
Functions
Variables
Typedefs
Enumerations
Enumerator
Friends
Macros
Groups
Pages
Class Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
X
A
DataFileInfo
(
gmx
)
IFileOutputRedirector
(
gmx
)
NotImplementedError
(
gmx
)
Simd4FBool
(
gmx
)
DataFileOptions
(
gmx
)
IForceProvider
(
gmx
)
HardwareTopology::Numa
(
gmx
)
Simd4Float
(
gmx
)
AbstractAnalysisArrayData
(
gmx
)
DDBalanceRegionHandler
IHelpTopic
(
gmx
)
HardwareTopology::NumaNode
(
gmx
)
SimdDBool
(
gmx
)
AbstractAnalysisData
(
gmx
)
DefaultInitializationAllocator
(
gmx
)
IKeyValueTreeTransformRules
(
gmx
)
NumericalSplineTableInput
(
gmx
)
SimdDIBool
(
gmx
)
AbstractAverageHistogram
(
gmx
)
DensityFittingForce
(
gmx
)
ILastStepSignallerClient
(
gmx
)
NumPmeDomains
SimdDInt32
(
gmx
)
AbstractCompositeHelpTopic
(
gmx
)
DensityFittingModuleInfo
(
gmx
)
ILoggingSignallerClient
(
gmx
)
O
SimdDInt32Tag
(
gmx
)
AbstractOption
(
gmx
)
DensitySimilarityMeasure
(
gmx
)
ILogTarget
(
gmx
)
SimdDouble
(
gmx
)
AbstractOptionSection
(
gmx
)
HardwareTopology::Device
(
gmx
)
IMDModule
(
gmx
)
ObservablesHistory
SimdDoubleTag
(
gmx
)
AbstractOptionSectionHandle
(
gmx
)
df_history_t
IMDOutputProvider
(
gmx
)
OpenClTraits
(
gmx
)
SimdFBool
(
gmx
)
AbstractOptionStorage
(
gmx
)
DirectoryEnumerator
(
gmx
)
IMdpOptionProvider
(
gmx
)
OpenClTraits< cl_command_queue >
(
gmx
)
SimdFIBool
(
gmx
)
AbstractPlotModule
(
gmx
)
DomainLifetimeWorkload
(
gmx
)
InconsistentInputError
(
gmx
)
OpenClTraits< cl_context >
(
gmx
)
SimdFInt32
(
gmx
)
AbstractSimpleHelpTopic
(
gmx
)
DomDecHelper
(
gmx
)
INeighborSearchSignallerClient
(
gmx
)
OpenClTraits< cl_kernel >
(
gmx
)
SimdFInt32Tag
(
gmx
)
accessor_basic
(
gmx
)
DomdecOptions
(
gmx
)
InstallationPrefixInfo
(
gmx
)
OpenClTraits< cl_program >
(
gmx
)
SimdFloat
(
gmx
)
KeyValueTreeTransformRuleBuilder::AfterFrom
(
gmx
)
DoubleOption
(
gmx
)
Int64Option
(
gmx
)
OpenClTraitsBase
(
gmx
)
SimdFloatTag
(
gmx
)
AlignedAllocationPolicy
(
gmx
)
DoubleOptionInfo
(
gmx
)
Int64OptionInfo
(
gmx
)
OptionInfo
(
gmx
)
SimdSetZeroProxy
(
gmx
)
AlignedArray< double, N >
(
gmx
)
E
IntegerOption
(
gmx
)
OptionManagerContainer
(
gmx
)
SimdTraits
(gmx::internal)
AlignedArray< float, N >
(
gmx
)
IntegerOptionInfo
(
gmx
)
Options
(
gmx
)
SimpleHelpTopic
(
gmx
)
Allocator
(
gmx
)
ekinstate_t
InteractionListHandle
OptionsAssigner
(
gmx
)
SimulationContext
(
gmx
)
AllocatorTest
(
gmx::test
)
EnergyCalculationFrequencyErrors
(
gmx
)
InteractionOfType
OptionsBehaviorCollection
(
gmx
)
SimulationGroups
AnalysisArrayData
(
gmx
)
EnergyElement
(
gmx
)
InteractionsOfType
OptionSection
(
gmx
)
SimulationInstabilityError
(
gmx
)
AnalysisData
(
gmx
)
EnergySignaller
(
gmx
)
InteractiveTestHelper
(
gmx::test
)
OptionSectionHandle
(
gmx
)
SimulationSignal
(
gmx
)
AnalysisDataAverageModule
(
gmx
)
gmx_ga2la_t::Entry
InternalError
(
gmx
)
OptionsIterator
(
gmx
)
SimulationSignaller
(
gmx
)
AnalysisDataBinAverageModule
(
gmx
)
EnumerationArray
(
gmx
)
InvalidInputError
(
gmx
)
OptionsModifyingIterator
(
gmx
)
SimulationWorkload
(
gmx
)
AnalysisDataDisplacementModule
(
gmx
)
EnumerationIterator
(
gmx
)
IOptionManager
(
gmx
)
OptionsModifyingTypeVisitor
(
gmx
)
SimulatorBuilder
(
gmx
)
AnalysisDataFrameAverageModule
(
gmx
)
EnumerationWrapper
(
gmx
)
IOptionsBehavior
(
gmx
)
OptionsModifyingVisitor
(
gmx
)
Site
(
gmx
)
AnalysisDataFrameHeader
(
gmx
)
EnumOption
(
gmx
)
IOptionsContainer
(
gmx
)
OptionStorageTemplate
(
gmx
)
HardwareTopology::Socket
(
gmx
)
AnalysisDataFrameRef
(
gmx
)
EnumOptionInfo
(
gmx
)
IOptionsContainerWithSections
(
gmx
)
OptionStorageTemplateSimple
(
gmx
)
StandardInputStream
(
gmx
)
AnalysisDataHandle
(
gmx
)
EwaldBoxZScaler
IOutputAdapter
(
gmx
)
OptionsTypeVisitor
(
gmx
)
StatePropagatorData
(
gmx
)
AnalysisDataLifetimeModule
(
gmx
)
ExactTextMatch
(
gmx::test
)
IProgramContext
(
gmx
)
OptionsVisitor
(
gmx
)
StaticLog2
(
gmx
)
AnalysisDataModuleManager
(
gmx
)
ExceptionInfo
(
gmx
)
IRestraintPotential
(
gmx
)
OptionTemplate
(
gmx
)
StaticLog2< 0 >
(
gmx
)
AnalysisDataModuleParallel
(
gmx
)
ExceptionInitializer
(
gmx
)
ISerializer
(
gmx
)
OptionValueConverterSimple
(
gmx
)
StaticLog2< 1 >
(
gmx
)
AnalysisDataModuleSerial
(
gmx
)
ExclusionBlock
(
gmx
)
ISignaller
(
gmx
)
OutputAdapterContainer
(
gmx
)
StdioTestHelper
(
gmx::test
)
AnalysisDataParallelOptions
(
gmx
)
ExponentialDistribution
(
gmx
)
ISimulatorElement
(
gmx
)
OutputRequirementOptionDirector
(
gmx
)
StepWorkload
(
gmx
)
AnalysisDataPlotModule
(
gmx
)
extents
(
gmx
)
isIntegralConstant
(
gmx
)
OutputRequirements
(
gmx
)
StopConditionSignal
(
gmx
)
AnalysisDataPlotSettings
(
gmx
)
extents_analyse< 0 >
(gmx::detail)
RangePartitioning::Block::iterator
(
gmx
)
OutputSelector
(
gmx
)
StopConditionTime
(
gmx
)
AnalysisDataPointSetRef
(
gmx
)
extents_analyse< R, dynamic_extent, StaticExtents...>
(gmx::detail)
ITextBlockMatcher
(
gmx::test
)
OutputSelectorDeathTest
(
gmx::test
)
StopHandler
(
gmx
)
AnalysisDataSimpleHistogramModule
(
gmx
)
extents_analyse< R, E0, StaticExtents...>
(gmx::detail)
ITextBlockMatcherSettings
(
gmx::test
)
P
StopHandlerBuilder
(
gmx
)
AnalysisDataStorage
(
gmx
)
F
ITopologyHolderClient
(
gmx
)
StringCompare
(
gmx
)
AnalysisDataStorageFrame
(
gmx
)
ITopologyProvider
(
gmx
)
PaddedVector
(
gmx
)
StringFormatter
(
gmx
)
AnalysisDataTestFixture
(
gmx::test
)
FileIOError
(
gmx
)
ITrajectorySignallerClient
(
gmx
)
PaddingTraits
(gmx::detail)
StringInputStream
(
gmx
)
AnalysisDataTestInput
(
gmx::test
)
FileNameOption
(
gmx
)
ITrajectoryWriterClient
(
gmx
)
PageAlignedAllocationPolicy
(
gmx
)
StringOption
(
gmx
)
AnalysisDataTestInputFrame
(
gmx::test
)
FileNameOptionInfo
(
gmx
)
K
ParallelConsistencyError
(
gmx
)
StringOptionInfo
(
gmx
)
AnalysisDataTestInputPointSet
(
gmx::test
)
FileNameOptionManager
(
gmx
)
UniformRealDistribution::param_type
(
gmx
)
StringOutputStream
(
gmx
)
AnalysisDataValue
(
gmx
)
FilteringExactTextMatch
(
gmx::test
)
KeyValueTreeBuilder
(
gmx
)
UniformIntDistribution::param_type
(
gmx
)
StringTestBase
(
gmx::test
)
AnalysisDataVectorPlotModule
(
gmx
)
FlagsTemplate
(
gmx
)
KeyValueTreeObjectArrayBuilder
(
gmx
)
TabulatedNormalDistribution::param_type
(
gmx
)
T
AnalysisDataWeightedHistogramModule
(
gmx
)
FlagTest
(
gmx::test
)
KeyValueTreeObjectBuilder
(
gmx
)
NormalDistribution::param_type
(
gmx
)
AnalysisHistogramSettings
(
gmx
)
FloatingPointDifference
(
gmx::test
)
KeyValueTreePath
(
gmx
)
GammaDistribution::param_type
(
gmx
)
t_filenm
AnalysisHistogramSettingsInitializer
(
gmx
)
FloatingPointTolerance
(
gmx::test
)
KeyValueTreeTransformRuleBuilder
(
gmx
)
ExponentialDistribution::param_type
(
gmx
)
t_mapping
AnalysisNeighborhood
(
gmx
)
FloatOption
(
gmx
)
KeyValueTreeTransformRulesScoped
(
gmx
)
PartialDeserializedTprFile
t_matrix
AnalysisNeighborhoodPair
(
gmx
)
FloatOptionInfo
(
gmx
)
KeyValueTreeUniformArrayBuilder
(
gmx
)
PbcAiuc
t_mdatoms
AnalysisNeighborhoodPairSearch
(
gmx
)
ForceElement
(
gmx
)
KeyValueTreeValueBuilder
(
gmx
)
PhysicalNodeCommunicator
(
gmx
)
t_pargs
AnalysisNeighborhoodPositions
(
gmx
)
ForceOutputs
(
gmx
)
L
PmeLoadBalanceHelper
(
gmx
)
t_pbc
AnalysisNeighborhoodSearch
(
gmx
)
ForceProviderInput
(
gmx
)
GaussianSpreadKernelParameters::PositionAndAmplitude
(
gmx
)
t_state
AnalyticalSplineTableInput
(
gmx
)
ForceProviderOutput
(
gmx
)
LastStepSignaller
(
gmx
)
PotentialPointData
(
gmx
)
t_xpmelmt
Any
(
gmx
)
ForceProviders
layout_right
(
gmx
)
PreprocessingAtomTypes
TabulatedNormalDistribution
(
gmx
)
AnyOutputSupportedFiles
(
gmx::test
)
ForceWithShiftForces
(
gmx
)
LegacyMdrunOptions
(
gmx
)
PreprocessingBondAtomType
TestException
(
gmx::test
)
APIError
(
gmx
)
ForceWithVirial
(
gmx
)
LocalAtomSet
(
gmx
)
PreprocessResidue
TestFileInputRedirector
(
gmx::test
)
ArrayRef
(
gmx
)
FreeEnergyPerturbationElement
(
gmx
)
LocalAtomSetManager
(
gmx
)
PrivateImplPointer
(
gmx
)
TestFileManager
(
gmx::test
)
ArrayRefWithPadding
(
gmx
)
G
LogEntryWriter
(
gmx
)
Propagator
(
gmx
)
TestFileOutputRedirector
(
gmx::test
)
AtomIterator
LoggerBuilder
(
gmx
)
ProxyPtr
TestOptionsProvider
(
gmx::test
)
AtomProperties
GammaDistribution
(
gmx
)
LoggerOwner
(
gmx
)
Q
TestReferenceChecker
(
gmx::test
)
AtomProxy
GaussianSpreadKernelParameters
(
gmx
)
LoggerTestHelper
(
gmx::test
)
TestReferenceData
(
gmx::test
)
AtomRange
GaussTransform3D
(
gmx
)
LoggingSignaller
(
gmx
)
QuadraticSplineTable
(
gmx
)
TextFileMatch
(
gmx::test
)
Awh
(
gmx
)
GlobalCommandLineHelpContext
(
gmx
)
HardwareTopology::LogicalProcessor
(
gmx
)
R
TextInputFile
(
gmx
)
B
gmx_ana_index_t
CpuInfo::LogicalProcessor
(
gmx
)
TextInputStream
(
gmx
)
gmx_ana_indexmap_t
LogLevelHelper
(
gmx
)
RangeError
(
gmx
)
TextLineWrapper
(
gmx
)
basic_mdspan
(
gmx
)
gmx_ana_pos_t
M
RangePartitioning
(
gmx
)
TextLineWrapperSettings
(
gmx
)
BasicVector
(
gmx
)
gmx_ffparams_t
registerMdModuleNotification< CurrentCallParameter, CallParameter...>
(
gmx
)
TextOutputFile
(
gmx
)
BenchmarkSystem
(
gmx
)
gmx_ga2la_t
HardwareTopology::Machine
(
gmx
)
RepeatingOptionSection
(
gmx
)
TextOutputStream
(
gmx
)
BinaryInformationSettings
(
gmx
)
gmx_gpu_info_t
MappedUnionFinder
(
gmx
)
RepeatingOptionSectionHandle
(
gmx
)
TextReader
(
gmx
)
RangePartitioning::Block
(
gmx
)
gmx_localtop_t
layout_right::mapping
(
gmx
)
ReplicaExchangeParameters
TextTableFormatter
(
gmx
)
BondedInteraction
gmx_molblock_t
MDAtoms
(
gmx
)
ResetHandler
(
gmx
)
TextWriter
(
gmx
)
BondedInteractionList
gmx_moltype_t
MDLogger
(
gmx
)
RestraintManager
(
gmx
)
ThreeFry2x64
(
gmx
)
BooleanOption
(
gmx
)
gmx_multisim_t
MdModuleNotification
(
gmx
)
RestraintMDModule
(
gmx
)
ThreeFry2x64Fast
(
gmx
)
BooleanOptionInfo
(
gmx
)
gmx_sparsematrix
MDModules
(
gmx
)
S
ThreeFry2x64General
(
gmx
)
C
GpuEventSynchronizer
MdModulesCheckpointReadingBroadcast
(
gmx
)
TimeUnitBehavior
(
gmx
)
GpuHaloExchange
(
gmx
)
MdModulesWriteCheckpointData
(
gmx
)
Selection
(
gmx
)
TimeUnitManager
(
gmx
)
HardwareTopology::Cache
(
gmx
)
GpuRegionTimerImpl
Mdrunner
(
gmx
)
SelectionCollection
(
gmx
)
ToleranceError
(
gmx
)
CheckpointHandler
(
gmx
)
GpuRegionTimerWrapper
MdrunnerBuilder
(
gmx
)
SelectionFileOption
(
gmx
)
KeyValueTreeTransformRuleBuilder::ToObject
(
gmx
)
CheckpointHeaderContents
GpuTaskAssignments
(
gmx
)
MessageStringCollector
(
gmx
)
SelectionFileOptionInfo
(
gmx
)
TopologyHolder
(
gmx
)
CheckpointHelper
(
gmx
)
GpuTaskAssignmentsBuilder
(
gmx
)
MessageStringContext
(
gmx
)
SelectionOption
(
gmx
)
TopologyInformation
(
gmx
)
ClfftInitializer
(
gmx
)
GpuTaskMapping
(
gmx
)
ModularSimulator
(
gmx
)
SelectionOptionBehavior
(
gmx
)
KeyValueTreeTransformRuleBuilder::ToValue
(
gmx
)
ClHandle
(
gmx
)
GromacsException
(
gmx
)
ModuleSelection
(
gmx::test
)
SelectionOptionInfo
(
gmx
)
TpxFileHeader
CommandLine
(
gmx::test
)
H
ModuleTest
(
gmx::test
)
SelectionOptionManager
(
gmx
)
TrajectoryAnalysisCommandLineRunner
(
gmx
)
CommandLineHelpContext
(
gmx
)
MoleculeBlockIndices
SelectionPosition
(
gmx
)
TrajectoryAnalysisModule
(
gmx
)
CommandLineHelpWriter
(
gmx
)
HardwareTopology
(
gmx
)
MoleculeInformation
SelectionTopologyProperties
(
gmx
)
TrajectoryAnalysisModuleData
(
gmx
)
CommandLineModuleGroup
(
gmx
)
HashedMap
(
gmx
)
MoleculePatch
SetAtoms
(
gmx
)
TrajectoryAnalysisSettings
(
gmx
)
CommandLineModuleManager
(
gmx
)
HelpLinks
(
gmx
)
MoleculePatchDatabase
SetAtomsSupportedFiles
(
gmx::test
)
TrajectoryElement
(
gmx
)
CommandLineModuleSettings
(
gmx
)
HelpManager
(
gmx
)
MrcDataStatistics
(
gmx
)
SetAtomsUnSupportedFiles
(
gmx::test
)
TrajectoryElementBuilder
(
gmx
)
CommandLineParser
(
gmx
)
HelpWriterContext
(
gmx
)
MrcDensityMapHeader
(
gmx
)
SetBox
(
gmx
)
TrajectoryFileOpener
(
gmx
)
CommandLineProgramContext
(
gmx
)
history_t
MrcDensityMapOfFloatFromFileReader
(
gmx
)
SetForces
(
gmx
)
TrajectoryFrameWriter
(
gmx
)
CommandLineTestBase
(
gmx::test
)
HostAllocationPolicy
(
gmx
)
MrcDensityMapOfFloatReader
(
gmx
)
SetForceSupportedFiles
(
gmx::test
)
TranslateAndScale
(
gmx
)
CommandLineTestHelper
(
gmx::test
)
HardwareTopology::HWThread
(
gmx
)
MrcDensityMapOfFloatWriter
(
gmx
)
SetForceUnSupportedFiles
(
gmx::test
)
U
CompositeHelpTopic
(
gmx
)
I
MrcDensitySkewData
(
gmx
)
SetPrecision
(
gmx
)
CompositeSimulatorElement
(
gmx
)
MultiDimArray
(
gmx
)
SetPrecisionSupportedFiles
(
gmx::test
)
UniformIntDistribution
(
gmx
)
ComputeGlobalsElement
(
gmx
)
IAnalysisDataModule
(
gmx
)
N
SetPrecisionUnSupportedFiles
(
gmx::test
)
UniformRealDistribution
(
gmx
)
ConfMatch
(
gmx::test
)
ICheckpointHelperClient
(
gmx
)
SetStartTime
(
gmx
)
UnionFinder
(
gmx
)
Constraints
(
gmx
)
ICommandLineModule
(
gmx
)
NeighborSearchSignaller
(
gmx
)
SetTimeStep
(
gmx
)
Update
(
gmx
)
ConstraintsElement
(
gmx
)
ICommandLineOptionsModule
(
gmx
)
no_delete
(
gmx
)
SetVelocities
(
gmx
)
UpdateGroupsCog
(
gmx
)
HardwareTopology::Core
(
gmx
)
ICommandLineOptionsModuleSettings
(
gmx
)
NoContentsMatch
(
gmx::test
)
SetVelocitySupportedFiles
(
gmx::test
)
UserInputError
(
gmx
)
CpuInfo
(
gmx
)
IdentityFormatter
(
gmx
)
nonbonded_verlet_t
SetVelocityUnSupportedFiles
(
gmx::test
)
X
CrystallographicLabels
(
gmx
)
IEnergySignallerClient
(
gmx
)
NonbondedBenchmarkInfo
(
gmx
)
GaussianSpreadKernelParameters::Shape
(
gmx
)
CubicSplineTable
(
gmx
)
IExecutableEnvironment
(
gmx
)
NoOptionalOutput
(
gmx::test
)
ShellFCElement
(
gmx
)
XvgMatch
(
gmx::test
)
D
IFileInputRedirector
(
gmx
)
NormalDistribution
(
gmx
)
SignallerBuilder
(
gmx
)
IFileMatcher
(
gmx::test
)
not_null
(
gmx::compat
)
Simd4DBool
(
gmx
)
DataFileFinder
(
gmx
)
IFileMatcherSettings
(
gmx::test
)
NoTextMatch
(
gmx::test
)
Simd4Double
(
gmx
)
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
X
Generated on Wed Sep 25 2019 15:03:36 for Gromacs by
1.8.5