Here is a list of all documented class members with links to the class documentation for each member:
- n -
- N
: t_UmbrellaWindow
, t_bb
- n
: t_coordselection
, t_methoddata_kwreal
, t_methoddata_permute
, t_partition
, gmx_fft_fftpack
, t_spheresurfacebin
, t_methoddata_kwint
- n_alloc
: t_spheresurfacebin
- n_at_lam
: df_history_t
- n_dev
: gmx_gpu_info_t
- n_dev_compatible
: gmx_gpu_info_t
- nalloc
: cu_atomdata
, cl_atomdata
, gmx_ana_selvalue_t
, swap_compartment
, gmx_sparsematrix
, t_mdatoms
- nalloc_index
: gmx_ana_index_t
- nalloc_loc
: gmx::ImdSession::Impl
- nalloc_x
: gmx_ana_pos_t
- name
: gmx::DataFileInfo
, gmx::NonbondedBenchmarkInfo
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::RootHelpTopic
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::CommandsHelpTopic
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::ModuleHelpTopic
, gmx::CommandLineHelpModule
, gmx::ICommandLineModule
, gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule
, gmx::test::MockModule
, gmx::AbstractSimpleHelpTopic
, gmx::AbstractCompositeHelpTopic
, gmx::SimpleHelpTopic< HelpText >
, gmx::CompositeHelpTopic< HelpText >
, gmx::IHelpTopic
- Name
: gmx::CpuInfo
- name()
: gmx::OptionInfo
, gmx::AbstractOptionStorage
, MoleculeInformation
, gmx::SelectionParserParameter
, gmx::internal::SelectionData
, MoleculePatchDatabase
, gmx::Selection
, gmx::SelectionOptionManager::Impl::SelectionRequest
, MoleculeType
, gmx::SelectionTreeElement
, gmx::anonymous_namespace{selhelp.cpp}::KeywordDetailsHelpTopic
, gmx::SelectionTreeElement
, gmx::SelectionParserSymbol
, gmx::TopologyInformation
, t_register_method
, anonymous_namespace{legacymodules.cpp}::ObsoleteToolModule
, gmx_ana_selmethod_t
, gmx_ana_selparam_t
, gmx_moltype_t
- name_
: gmx::DensityFittingModuleInfo
, gmx::internal::OptionSectionImpl
, gmx::SelectionParserSymbol::Impl
- names
: gmx_ana_indexgrps_t
- namesOfEnergiesToMatch_
: gmx::test::anonymous_namespace{periodicactions.cpp}::PeriodicActionsTest
- nas
: t_methoddata_same
- nat
: ilist_data_t
, gmx_slabdata
, gmx::ImdSession::Impl
- nat_loc
: gmx::ImdSession::Impl
- natom()
: PreprocessResidue
- natoms
: gmx_pme_comm_n_box_t
, CheckpointHeaderContents
, TpxFileHeader
, t_state
, cu_atomdata
, cl_atomdata
- nAtoms
: PmeGpuAtomParams
- natoms_local
: cu_atomdata
, cl_atomdata
- nAtomsAlloc
: PmeGpu
- nAtomsPadded
: PmeGpu
- natpair_lj_
: PairlistSet
- natpair_ljq_
: PairlistSet
- natpair_q_
: PairlistSet
- nattempt
: gmx_repl_ex
- nb
: t_methoddata_distance
- nb_c
: gmx_wallclock_gpu_nbnxn_t
- nb_d2h
: Nbnxm::gpu_timers_t::XFTransfers
- nb_d2h_t
: gmx_wallclock_gpu_nbnxn_t
- nb_h2d
: Nbnxm::gpu_timers_t::XFTransfers
- nb_h2d_t
: gmx_wallclock_gpu_nbnxn_t
- nb_k
: Nbnxm::gpu_timers_t::Interaction
- nbat
: nonbonded_verlet_t
- nbfp
: cu_nbparam
- nbfp_climg2d
: cl_nbparam
- nbfp_comb
: cu_nbparam
- nbfp_comb_climg2d
: cl_nbparam
- nbfp_comb_texobj
: cu_nbparam
- nbfp_texobj
: cu_nbparam
- nBin
: t_UmbrellaWindow
- nbins
: t_methoddata_insolidangle
- nblock_used
: f_thread_t
, bonded_threading_t
- nblocks
: gmx_sel_mempool_t
- nbnxmSimd
: Nbnxm::KernelBenchOptions
- nbonded
: thread_work_t
- nBootStrap
: t_UmbrellaOptions
- nbparam
: gmx_nbnxn_cuda_t
, gmx_nbnxn_ocl_t
- nbsearch
: t_methoddata_distance
- nbst
: gmx_nbnxn_cuda_t
, gmx_nbnxn_ocl_t
- nc
: gmx::Lincs
- nc_real
: gmx::Lincs
- ncc
: gmx::Lincs
- ncc_triangle
: gmx::Lincs
- ncell
: gmx_nbnxn_cuda_t
- ncell_alloc
: gmx_nbnxn_cuda_t
- ncg
: gmx::Lincs
- ncg_flex
: gmx::Lincs
- ncg_triangle
: gmx::Lincs
- nChargePerturbed
: t_mdatoms
- ncmap()
: InteractionsOfType
- nCoordsel
: t_UmbrellaOptions
- nct()
: InteractionsOfType
- nctl
: MoleculePatch
- ncxy_ind
: gmx_nbnxn_cuda_t
- ncxy_ind_alloc
: gmx_nbnxn_cuda_t
- ncxy_na
: gmx_nbnxn_cuda_t
- ncxy_na_alloc
: gmx_nbnxn_cuda_t
- nCyl
: swap_group
- nCylBoth
: swap_group
- ndata
: gmx_sparsematrix
- ndim
: gmx::AnalysisDataDisplacementModule::Impl
, gmx_fft_fftpack
, gmx_fft_fftw3
, gmx_fft_mkl
, t_pullcoord
, gmx::Bias
- ndim_ePBC
: t_pbc
- ndisrepairs
: history_t
- nearestIndex()
: gmx::GridAxis
, gmx::Grid
- nearestPoint()
: gmx::AnalysisNeighborhoodSearch
- nED
: CheckpointHeaderContents
- needsMasses
: gmx::SelectionTopologyProperties
- needsTopology
: gmx::SelectionTopologyProperties
- needStorage()
: gmx::internal::AnalysisDataStorageImpl
- needToCalcCom
: pull_group_work_t
- needToSumEkinhOld()
: gmx::EnergyElement
- neig
: anonymous_namespace{edsam.cpp}::t_eigvec
- neighbor
: gmx::GridPoint
- nenergrp
: t_mdatoms
- neom
: gmx_sel_lexer_t
- newBox
: gmx::OutputRequirements
- newHistogramSize()
: gmx::HistogramSize
- newi
: MoleculePatch
- newx
: MoleculePatch
- nex
: gmx_repl_ex
- nexchange
: gmx_repl_ex
- nexpsel
: gmx_sel_lexer_t
- next
: gmx_fft_fftpack
, gmx::detail::extents_analyse< R, E0, StaticExtents...>
, gmx::detail::extents_analyse< R, dynamic_extent, StaticExtents...>
, gmx_ana_poscalc_t
, gmx::SelectionTreeElement
- next_extents_analyse
: gmx::detail::extents_analyse< R, E0, StaticExtents...>
, gmx::detail::extents_analyse< R, dynamic_extent, StaticExtents...>
- next_type
: gmx::registerMdModuleNotification< CurrentCallParameter, CallParameter...>
- nextFile()
: gmx::DirectoryEnumerator
- nextGroup()
: gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator
- nextHeavyType
: VirtualSiteConfiguration
- nextIndex_
: gmx::internal::AnalysisDataStorageImpl
- nextLineIndex_
: gmx::TextTableFormatter::Impl::ColumnData
- nextLineOffset_
: gmx::TextTableFormatter::Impl::ColumnData
- nextMethodSymbol
: gmx_sel_lexer_t
- nextParagraph()
: gmx::RstParagraphIterator
- nextparam
: gmx_sel_lexer_t
- nextValue()
: gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator
- nfile
: gmx::ISimulator
- nforces
: gmx::ImdSession::Impl
- ngrids
: PmeShared
- ngroup
: t_pullcoord
- ngrp
: t_swap
- ngtc
: CheckpointHeaderContents
, TpxFileHeader
, t_state
- nhack()
: MoleculePatchDatabase
- nhchainlength
: CheckpointHeaderContents
, t_state
- nhpres_vxi
: t_state
- nhpres_xi
: t_state
- nhx
: t_bb
- nHydrogens
: VirtualSiteConfiguration
- niceLevel()
: gmx::CommandLineCommonOptionsHolder
- nIter
: gmx::Lincs
- nk
: PmeShared
- nlambda
: CheckpointHeaderContents
, df_history_t
- nlhelp
: gmx_ana_selmethod_help_t
- nlocat
: gmx::Lincs
- nMassPerturbed
: t_mdatoms
- nmax
: gmx::AnalysisDataDisplacementModule::Impl
- nMol
: swap_compartment
- nmol
: gmx_molblock_t
- nMolAv
: swap_compartment
- nMolBefore
: swap_compartment
- nMolPast
: swap_compartment
- nMolReq
: swap_compartment
- nmoves
: gmx_repl_ex
- nn
: PmeShared
- nname
: MoleculePatch
- Nnext
: t_bb
- nnhpres
: CheckpointHeaderContents
, t_state
- nnodes
: CheckpointHeaderContents
- no
: gmx::BiasParams
- No
: gmx::Bias
- nodes
: gmx::HardwareTopology::Numa
- nonbonded_verlet_t()
: nonbonded_verlet_t
- nonbondedParameters
: gmx::BenchmarkSystem
- None
: gmx::CpuInfo
, gmx::HardwareTopology
, gmx::PositionCalculationCollection
- nonlocal_done
: gmx_nbnxn_ocl_t
, gmx_nbnxn_cuda_t
- nOrder
: gmx::Lincs
- norire_Dtav
: history_t
- norm()
: gmx::BasicVector< ValueType >
- norm2()
: gmx::BasicVector< ValueType >
- normalDistribution
: t_UmbrellaOptions
- NormalDistribution()
: gmx::NormalDistribution< RealType >
- normalizationType
: gmx::AwhEnergyBlock
- normalizationValue
: gmx::AwhEnergyBlock
- normalizeDensities_
: gmx::DensityFittingParameters
- normalizeFreeEnergyAndPmfSum()
: gmx::PointState
- normalizeProbability()
: gmx::AbstractAverageHistogram
- normalizeReferenceDensity()
: gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup
- normalizeValue()
: gmx::EnumOptionStorage
, gmx::OptionStorageTemplateSimple< T >
- normalizeValues()
: gmx::OptionInfo
, gmx::AbstractOptionStorage
, gmx::OptionStorageTemplateSimple< T >
, anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage
, gmx::SelectionFileOptionStorage
, gmx::SelectionOptionStorage
- nosehoover_vxi
: t_state
- nosehoover_xi
: t_state
- not_null()
: gmx::compat::not_null< T >
- notifier()
: gmx::MDModules
- notify()
: gmx::MdModuleNotification< CallParameter, MdModuleNotificationBase >
, gmx::registerMdModuleNotification<>::NoCallParameter
- notifyDataFinish()
: gmx::AnalysisDataModuleManager
- notifyDataStart()
: gmx::AnalysisDataModuleManager
- notifyFrameFinish()
: gmx::AnalysisDataModuleManager
- notifyFrameStart()
: gmx::AnalysisDataModuleManager
- notifyParallelDataStart()
: gmx::AnalysisDataModuleManager
- notifyParallelFrameFinish()
: gmx::AnalysisDataModuleManager
- notifyParallelFrameStart()
: gmx::AnalysisDataModuleManager
- notifyParallelPointsAdd()
: gmx::AnalysisDataModuleManager
- notifyPointsAdd()
: gmx::AnalysisDataModuleManager
- NotImplementedError()
: gmx::NotImplementedError
- nparams
: gmx_ana_selmethod_t
- npbcdim
: UnitCellInfo
- nPerturbed
: t_mdatoms
- npme
: CheckpointHeaderContents
- nPull
: t_UmbrellaWindow
- npullcrds
: t_UmbrellaHeader
- nr
: t_mdatoms
, gmx_ana_selvalue_t
, MoleculePatch
- nra()
: gmx::ExclusionBlock
- nrecv
: gmx_specatsend_t
- nrepl
: gmx_repl_ex
- nreq
: gmx_domdec_specat_comm_t
- nrexcl
: MoleculeInformation
, PreprocessResidue
- nrms
: t_bb
- nrnb
: gmx::ISimulator
, anonymous_namespace{minimize.cpp}::EnergyEvaluator
- nrow
: gmx_sparsematrix
- nsim
: gmx_multisim_t
- nslabs_alloc
: gmx_enfrotgrp
- nst
: gmx_repl_ex
- nsteps_done
: gmx_walltime_accounting
- nsteps_done_at_reset
: gmx_walltime_accounting
- nstimd
: gmx::ImdSession::Impl
- nstimd_new
: gmx::ImdSession::Impl
- nstlist_cmdline
: gmx::LegacyMdrunOptions
- nstlistPrune
: PairlistParams
- nstored
: gmx::AnalysisDataDisplacementModule::Impl
- nstpcouple
: gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters
- nstrout
: gmx_enfrot
- nstsout
: gmx_enfrot
- ntask
: gmx::Lincs
- ntbins
: t_methoddata_insolidangle
- nth
: omp_module_nthreads_t
- nthreads
: bonded_threading_t
- nthreads_omp
: gmx_hw_opt_t
- nthreads_omp_pme
: gmx_hw_opt_t
- nthreads_tmpi
: gmx_hw_opt_t
- nthreads_tot
: gmx_hw_opt_t
- ntompOptionIsSet
: gmx::MdrunOptions
- Ntot
: t_UmbrellaWindow
- ntriangle
: gmx::Lincs
, gmx::Task
- ntric_vec
: t_pbc
- nTypePerturbed
: t_mdatoms
- ntypes
: cl_atomdata
, cu_atomdata
- num_defining_atomnames
: gmx_help_make_index_group
- numa
: gmx::HardwareTopology::Machine
- numaNodeId
: gmx::HardwareTopology::Core
, gmx::HardwareTopology::Device
, gmx::HardwareTopology::LogicalProcessor
- numAtoms
: MoleculeType
, AtomDistribution::DomainAtomGroups
, PpRanks
, gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters
- numAtomsGlobal()
: gmx::LocalAtomSet
- numAtomsICluster
: Nbnxm::Grid::Geometry
- numAtomsICluster2Log
: Nbnxm::Grid::Geometry
- numAtomsInColumn()
: Nbnxm::Grid
- numAtomsJCluster
: Nbnxm::Grid::Geometry
- numAtomsLocal()
: gmx::LocalAtomSet
- numAtomsPerCell
: Nbnxm::Grid::Geometry
, Nbnxm::Grid
- numAtomsPerColumn
: Nbnxm::GridWork
- numAtomsPerMolecule
: MoleculeBlockIndices
- numAtomTypes
: gmx::BenchmarkSystem
- numberOfCores()
: gmx::HardwareTopology
- numberOfGroupNumbers()
: SimulationGroups
- numBlocks()
: gmx::RangePartitioning
, gmx::BiasWriter
- numBoundedDimensions
: UnitCellInfo
- numCells
: gmx::DomdecOptions
, Nbnxm::Grid
- numCellsColumnMax()
: Nbnxm::Grid
- numCellsInColumn()
: Nbnxm::Grid
- numClusters()
: Nbnxm::Grid
- numClustersPerCell()
: Nbnxm::Grid
- numCogs()
: gmx::UpdateGroupsCog
- numColumnRowSection_
: gmx::MrcDensityMapHeader
- numColumns()
: Nbnxm::Grid
- numColumnsMax()
: Nbnxm::GridSet
- numConstraints
: gmx::LincsDeviations
- numConstraintsTotal()
: gmx::Constraints
- numDDDimensions
: DDGridSetup
- numDimensions()
: gmx::Grid
- numDomains
: DDGridSetup
- numEnergySubblocksToWrite()
: gmx::Bias
- numExchanges
: ReplicaExchangeParameters
- numFlexibleConstraints()
: gmx::Constraints
- numFrames
: gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTestParameters
- numGridAtomsTotal()
: Nbnxm::GridSet
- numIterations
: Nbnxm::KernelBenchOptions
- numMolecules
: MoleculeType
- numOpenMPThreads
: gmx_walltime_accounting
- numPmeOnlyRanks
: DDGridSetup
- numPmeRanks
: gmx::DomdecOptions
- numPoints()
: gmx::Grid
, gmx::GridAxis
- numPointsInPeriod()
: gmx::GridAxis
- numPreIterations
: Nbnxm::KernelBenchOptions
- numRealAtomsLocal()
: Nbnxm::GridSet
- numRealAtomsTotal()
: Nbnxm::GridSet
- numRollingPruningParts
: PairlistParams
- numSamplesUpdateFreeEnergy_
: gmx::BiasParams
- numSettles
: gmx::test::anonymous_namespace{settle.cpp}::SettleTestParameters
- numSharedUpdate
: gmx::BiasParams
- numSteps
: gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters
- numStepsCommandline
: gmx::MdrunOptions
- numTCoupleGroups
: gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters
- numThreads
: Nbnxm::KernelBenchOptions
- numTypes()
: gmx_ffparams_t
- numUpdates()
: gmx::HistogramSize
- numUsedLabels_
: gmx::CrystallographicLabels
- numVisitsIteration()
: gmx::PointState
- numVisitsTot()
: gmx::PointState
- numWarmupIterations
: Nbnxm::KernelBenchOptions
- nUse
: t_coordselection
- nuse
: InterdependentTask
- nvalptr
: gmx_ana_selparam_t
- nvars
: gmx_ana_selcollection_t
- nx
: gmx_fft_mkl
, t_matrix
- ny
: t_matrix
, gmx_fft_mkl
- nz
: gmx_fft_mkl