Here is a list of all documented class members with links to the class documentation for each member:
- c -
- c
: t_pargs
- c1
: t_xpmelmt
- c2
: t_xpmelmt
- c_labelSize
: gmx::CrystallographicLabels
- cACC
: t_mdatoms
- caches
: gmx::HardwareTopology::Machine
- calculateForces()
: gmx::ForceProviders
, gmx::IForceProvider
- capacity()
: gmx::ArrayRef< T >
- cast()
: gmx::Any
- castRef()
: gmx::Any
- cell
: gmx_ga2la_t::Entry
- cellAngles_
: gmx::MrcDensityMapHeader
- cellLength_
: gmx::MrcDensityMapHeader
- cellSizeX
: gmx::DomdecOptions
- cellSizeY
: gmx::DomdecOptions
- cellSizeZ
: gmx::DomdecOptions
- cENER
: t_mdatoms
- centerOfMass()
: gmx::Site
- cFREEZE
: t_mdatoms
- cg_gl
: t_state
- cg_p
: t_state
- cgnr
: PreprocessResidue
, MoleculePatch
- changePairlistRadii()
: nonbonded_verlet_t
- charge()
: gmx::SelectionPosition
- chargeA
: t_mdatoms
- chargeB
: t_mdatoms
- charges
: gmx::BenchmarkSystem
, gmx::Selection
- checkAbilityDependencies()
: gmx::OutputSelector
, gmx::SetAtoms
, gmx::SetBox
, gmx::SetForces
, gmx::SetPrecision
, gmx::SetStartTime
, gmx::SetTimeStep
, gmx::SetVelocities
, gmx::IOutputAdapter
- checkAny()
: gmx::test::TestReferenceChecker
- checkBondedInteractions
: gmx::DomdecOptions
- checkBoolean()
: gmx::test::TestReferenceChecker
- checkCompound()
: gmx::test::TestReferenceChecker
- checkDouble()
: gmx::test::TestReferenceChecker
- checkEmptySequence()
: gmx::test::TestReferenceChecker
- checker()
: gmx::test::StringTestBase
- checkFile()
: gmx::test::IFileMatcher
- checkFileContents()
: gmx::test::StringTestBase
- checkFloat()
: gmx::test::TestReferenceChecker
- checkInt32()
: gmx::test::TestReferenceChecker
- checkInt64()
: gmx::test::TestReferenceChecker
- checkInteger()
: gmx::test::TestReferenceChecker
- checkKeyValueTreeObject()
: gmx::test::TestReferenceChecker
- checkKeyValueTreeValue()
: gmx::test::TestReferenceChecker
- checkOutputFiles()
: gmx::test::CommandLineTestHelper
, gmx::test::CommandLineTestBase
- checkpointFileVersion_
: gmx::MdModulesCheckpointReadingBroadcast
, gmx::MdModulesWriteCheckpointData
- CheckpointHandler()
: gmx::CheckpointHandler
- CheckpointHelper()
: gmx::CheckpointHelper
- checkPresent()
: gmx::test::TestReferenceChecker
- checkReal()
: gmx::test::TestReferenceChecker
- checkRealFromString()
: gmx::test::TestReferenceChecker
- checkRedirectedFiles()
: gmx::test::TestFileOutputRedirector
- checkSequence()
: gmx::test::TestReferenceChecker
- checkSequenceArray()
: gmx::test::TestReferenceChecker
- checkSequenceCompound()
: gmx::test::TestReferenceChecker
- checkSession()
: gmx::test::InteractiveTestHelper
- checkStream()
: gmx::test::ITextBlockMatcher
- checkString()
: gmx::test::TestReferenceChecker
- checkText()
: gmx::test::StringTestBase
- checkTextBlock()
: gmx::test::TestReferenceChecker
- checkUChar()
: gmx::test::TestReferenceChecker
- checkUInt32()
: gmx::test::TestReferenceChecker
- checkUInt64()
: gmx::test::TestReferenceChecker
- checkUnusedEntries()
: gmx::test::TestReferenceChecker
- checkValue()
: gmx::test::TestReferenceChecker
- checkVector()
: gmx::test::TestReferenceChecker
- classId
: gmx::HardwareTopology::Device
- clear()
: gmx::AnalysisDataValue
, gmx_ga2la_t
, gmx::HashedMap< T >
, gmx::PaddedVector< T, Allocator >
, gmx::UpdateGroupsCog
, gmx::TextTableFormatter
, gmx::RestraintManager
, gmx::RangePartitioning
, gmx::FixedCapacityVector< T, capacity >
, gmx::FlagsTemplate< FlagType >
, gmx::MessageStringCollector
- clearAll()
: gmx::FlagsTemplate< FlagType >
- clearFlag()
: gmx::AbstractOption
, gmx::AbstractOptionStorage
- clearSet()
: gmx::AbstractOptionStorage
, gmx::OptionStorageTemplate< T >
- ClfftInitializer()
: gmx::ClfftInitializer
- ClHandle()
: gmx::ClHandle< cl_type >
- Client
: gmx::NeighborSearchSignaller
, gmx::LastStepSignaller
, gmx::LoggingSignaller
, gmx::EnergySignaller
- clone()
: gmx::AbstractAverageHistogram
- cloneOnSpawnedThread()
: gmx::Mdrunner
- close()
: gmx::StringOutputStream
, gmx::StringInputStream
, gmx::TextReader
, gmx::TextInputStream
, gmx::TextOutputStream
, gmx::TextWriter
, gmx::StandardInputStream
, gmx::TextInputFile
, gmx::TextOutputFile
- closeAfterForceComputationCpu()
: DDBalanceRegionHandler
- closeAfterForceComputationGpu()
: DDBalanceRegionHandler
- closeTimingRegion()
: GpuRegionTimerWrapper< GpuRegionTimerImpl >
, GpuRegionTimerImpl
- CMainFunction
: gmx::CommandLineModuleManager
- cmakeGridSpacing
: InteractionsOfType
- cmap
: InteractionsOfType
- cmap_grid
: gmx_ffparams_t
- cmapAngles
: InteractionsOfType
- cmapAtomTypes
: InteractionsOfType
- code
: t_mapping
- cog()
: gmx::UpdateGroupsCog
- cogForAtom()
: gmx::UpdateGroupsCog
- cogIndex()
: gmx::UpdateGroupsCog
- collectiveIndex()
: gmx::LocalAtomSet
- columnCount()
: gmx::AbstractAnalysisData
, gmx::AnalysisDataStorageFrame
, gmx::test::AnalysisDataTestInput
, gmx::AnalysisDataPointSetRef
- columnRowSectionStart_
: gmx::MrcDensityMapHeader
- columnRowSectionToXyz_
: gmx::MrcDensityMapHeader
- comm_
: gmx::PhysicalNodeCommunicator
- commandLine()
: gmx::CommandLineProgramContext
, gmx::IProgramContext
- CommandLine()
: gmx::test::CommandLine
- commandLine()
: gmx::test::CommandLineTestBase
- CommandLineHelpContext()
: gmx::CommandLineHelpContext
- CommandLineHelpWriter()
: gmx::CommandLineHelpWriter
- CommandLineModuleManager()
: gmx::CommandLineModuleManager
- CommandLineParser()
: gmx::CommandLineParser
- CommandLineProgramContext()
: gmx::CommandLineProgramContext
- CommandLineTestHelper()
: gmx::test::CommandLineTestHelper
- commGuard_
: gmx::PhysicalNodeCommunicator
- commitValues()
: gmx::OptionStorageTemplate< T >
- communicateHaloCoordinates()
: gmx::GpuHaloExchange
- communicateHaloForces()
: gmx::GpuHaloExchange
- communicator_
: gmx::SimulationContext
- compile()
: gmx::SelectionCollection
- completeDefaultFileName()
: gmx::FileNameOptionManager
- completeFileName()
: gmx::FileNameOptionManager
- CompositeSimulatorElement()
: gmx::CompositeSimulatorElement
- compressed_symmetric
: gmx_sparsematrix
- computeDhdl
: gmx::StepWorkload
- computeEnergy
: gmx::StepWorkload
- computeForces
: gmx::StepWorkload
- ComputeGlobalsElement()
: gmx::ComputeGlobalsElement< algorithm >
- computeListedForces
: gmx::StepWorkload
- computeNonbondedForces
: gmx::StepWorkload
- computeVirial
: gmx::StepWorkload
, gmx::ForceWithShiftForces
- computeVirial_
: gmx::ForceWithVirial
- const_iterator
: gmx::FixedCapacityVector< T, capacity >
, gmx::ArrayRef< T >
, gmx::MultiDimArray< TContainer, Extents, LayoutPolicy >
, gmx::ArrayRefWithPadding< T >
- const_pointer
: gmx::ArrayRefWithPadding< T >
, gmx::FixedCapacityVector< T, capacity >
, gmx::ArrayRef< T >
- const_reference
: gmx::FixedCapacityVector< T, capacity >
, gmx::MultiDimArray< TContainer, Extents, LayoutPolicy >
, gmx::ArrayRef< T >
- const_reverse_iterator
: gmx::ArrayRef< T >
, gmx::FixedCapacityVector< T, capacity >
- const_view_type
: gmx::MultiDimArray< TContainer, Extents, LayoutPolicy >
- constArrayRefFromArray()
: gmx::ArrayRef< T >
- constArrayRefWithPadding()
: gmx::PaddedVector< T, Allocator >
, gmx::ArrayRefWithPadding< T >
- constBox()
: gmx::StatePropagatorData
- constForcesView()
: gmx::StatePropagatorData
- constLambdaView()
: gmx::FreeEnergyPerturbationElement
- constPositionsView()
: gmx::StatePropagatorData
- constPreviousBox()
: gmx::StatePropagatorData
- constPreviousPositionsView()
: gmx::StatePropagatorData
- constraintCommunicationRange
: gmx::DomdecOptions
- ConstraintsElement()
: gmx::ConstraintsElement< variable >
- constraintVirial()
: gmx::EnergyElement
- construct()
: gmx::DefaultInitializationAllocator< T, A >
- constructPairlist()
: nonbonded_verlet_t
- constVelocitiesView()
: gmx::StatePropagatorData
- constView()
: gmx::GaussTransform3D
, gmx::MrcDensityMapOfFloatReader
- contains()
: gmx::test::CommandLine
- convert()
: gmx::OptionValueConverterSimple< OutType >
- convertCoordinates()
: nonbonded_verlet_t
- convertCoordinatesGpu()
: nonbonded_verlet_t
- ConverterType
: gmx::OptionStorageTemplateSimple< T >
- convertOptionValue()
: gmx::SelectionOptionManager
- convertValue()
: gmx::AbstractOptionStorage
, gmx::OptionStorageTemplate< T >
- coordinate_
: gmx::GaussianSpreadKernelParameters::PositionAndAmplitude
- coordinates
: gmx::BenchmarkSystem
, gmx::Selection
- copyAtoms()
: gmx::TopologyInformation
- copyContents()
: gmx::AbstractAnalysisArrayData
- copyright()
: gmx::BinaryInformationSettings
- copyTot_atomtypes()
: PreprocessingAtomTypes
- coreRankInSocket
: gmx::HardwareTopology::LogicalProcessor
, gmx::CpuInfo::LogicalProcessor
- cores
: gmx::HardwareTopology::Socket
- cORF
: t_mdatoms
- count()
: gmx_ana_pos_t
- counter_type
: gmx::ThreeFry2x64General< rounds, internalCounterBits >
- countRestraints()
: gmx::RestraintManager
- coveredFraction()
: gmx::Selection
- cr_
: gmx::ForceProviderInput
, gmx::MdModulesCheckpointReadingBroadcast
- create()
: gmx::DensityFittingModuleInfo
, gmx::Any
, gmx::RestraintMDModule
, gmx::Any
, gmx::NonbondedBenchmarkInfo
- createArray()
: gmx::KeyValueTreeValueBuilder
- createFileMatcher()
: gmx::test::IFileMatcherSettings
, gmx::test::NoContentsMatch
, gmx::test::TextFileMatch
- createMatcher()
: gmx::test::FilteringExactTextMatch
, gmx::test::XvgMatch
, gmx::test::ITextBlockMatcherSettings
, gmx::test::ExactTextMatch
, gmx::test::NoTextMatch
, gmx::test::ConfMatch
- createModule()
: gmx::TrajectoryAnalysisCommandLineRunner
, gmx::ICommandLineOptionsModule
- createObject()
: gmx::KeyValueTreeValueBuilder
- createStorage()
: gmx::AbstractOption
, gmx::AbstractOptionSection
- createTrajectoryFrameWriter
: gmx::TrajectoryFrameWriter
- cross()
: gmx::BasicVector< ValueType >
- cTC
: t_mdatoms
- cU1
: t_mdatoms
- cU2
: t_mdatoms
- CubicSplineTable()
: gmx::CubicSplineTable
- currentFEPState()
: gmx::FreeEnergyPerturbationElement
- currentFrame()
: gmx::AnalysisDataStorage
- cVCM
: t_mdatoms