- c -
- calculateForces()
: gmx::IForceProvider
, gmx::ForceProviders
- capacity()
: gmx::ArrayRef< T >
- cast()
: gmx::Any
- castRef()
: gmx::Any
- centerOfMass()
: gmx::Site
- changePairlistRadii()
: nonbonded_verlet_t
- charge()
: gmx::SelectionPosition
- charges()
: gmx::Selection
- checkAbilityDependencies()
: gmx::SetStartTime
, gmx::SetTimeStep
, gmx::SetVelocities
, gmx::IOutputAdapter
, gmx::OutputSelector
, gmx::SetAtoms
, gmx::SetBox
, gmx::SetForces
, gmx::SetPrecision
- checkAny()
: gmx::test::TestReferenceChecker
- checkBoolean()
: gmx::test::TestReferenceChecker
- checkCompound()
: gmx::test::TestReferenceChecker
- checkDouble()
: gmx::test::TestReferenceChecker
- checkEmptySequence()
: gmx::test::TestReferenceChecker
- checker()
: gmx::test::StringTestBase
- checkFile()
: gmx::test::IFileMatcher
- checkFileContents()
: gmx::test::StringTestBase
- checkFloat()
: gmx::test::TestReferenceChecker
- checkInt32()
: gmx::test::TestReferenceChecker
- checkInt64()
: gmx::test::TestReferenceChecker
- checkInteger()
: gmx::test::TestReferenceChecker
- checkKeyValueTreeObject()
: gmx::test::TestReferenceChecker
- checkKeyValueTreeValue()
: gmx::test::TestReferenceChecker
- checkOutputFiles()
: gmx::test::CommandLineTestHelper
, gmx::test::CommandLineTestBase
- CheckpointHandler()
: gmx::CheckpointHandler
- CheckpointHelper()
: gmx::CheckpointHelper
- checkPresent()
: gmx::test::TestReferenceChecker
- checkReal()
: gmx::test::TestReferenceChecker
- checkRealFromString()
: gmx::test::TestReferenceChecker
- checkRedirectedFiles()
: gmx::test::TestFileOutputRedirector
- checkSequence()
: gmx::test::TestReferenceChecker
- checkSequenceArray()
: gmx::test::TestReferenceChecker
- checkSequenceCompound()
: gmx::test::TestReferenceChecker
- checkSession()
: gmx::test::InteractiveTestHelper
- checkStream()
: gmx::test::ITextBlockMatcher
- checkString()
: gmx::test::TestReferenceChecker
- checkText()
: gmx::test::StringTestBase
- checkTextBlock()
: gmx::test::TestReferenceChecker
- checkUChar()
: gmx::test::TestReferenceChecker
- checkUInt32()
: gmx::test::TestReferenceChecker
- checkUInt64()
: gmx::test::TestReferenceChecker
- checkUnusedEntries()
: gmx::test::TestReferenceChecker
- checkValue()
: gmx::test::TestReferenceChecker
- checkVector()
: gmx::test::TestReferenceChecker
- clear()
: gmx::AnalysisDataValue
, gmx_ga2la_t
, gmx::HashedMap< T >
, gmx::PaddedVector< T, Allocator >
, gmx::UpdateGroupsCog
, gmx::TextTableFormatter
, gmx::RestraintManager
, gmx::RangePartitioning
, gmx::FixedCapacityVector< T, capacity >
, gmx::FlagsTemplate< FlagType >
, gmx::MessageStringCollector
- clearAll()
: gmx::FlagsTemplate< FlagType >
- clearFlag()
: gmx::AbstractOption
, gmx::AbstractOptionStorage
- clearSet()
: gmx::AbstractOptionStorage
, gmx::OptionStorageTemplate< T >
- ClfftInitializer()
: gmx::ClfftInitializer
- ClHandle()
: gmx::ClHandle< cl_type >
- clone()
: gmx::AbstractAverageHistogram
- cloneOnSpawnedThread()
: gmx::Mdrunner
- close()
: gmx::StandardInputStream
, gmx::TextInputFile
, gmx::TextOutputFile
, gmx::StringOutputStream
, gmx::StringInputStream
, gmx::TextReader
, gmx::TextInputStream
, gmx::TextOutputStream
, gmx::TextWriter
- closeAfterForceComputationCpu()
: DDBalanceRegionHandler
- closeAfterForceComputationGpu()
: DDBalanceRegionHandler
- closeTimingRegion()
: GpuRegionTimerWrapper< GpuRegionTimerImpl >
, GpuRegionTimerImpl
- cog()
: gmx::UpdateGroupsCog
- cogForAtom()
: gmx::UpdateGroupsCog
- cogIndex()
: gmx::UpdateGroupsCog
- collectiveIndex()
: gmx::LocalAtomSet
- columnCount()
: gmx::AbstractAnalysisData
, gmx::AnalysisDataPointSetRef
, gmx::AnalysisDataStorageFrame
, gmx::test::AnalysisDataTestInput
- CommandLine()
: gmx::test::CommandLine
- commandLine()
: gmx::IProgramContext
, gmx::CommandLineProgramContext
, gmx::test::CommandLineTestBase
- CommandLine()
: gmx::test::CommandLine
- CommandLineHelpContext()
: gmx::CommandLineHelpContext
- CommandLineHelpWriter()
: gmx::CommandLineHelpWriter
- CommandLineModuleManager()
: gmx::CommandLineModuleManager
- CommandLineParser()
: gmx::CommandLineParser
- CommandLineProgramContext()
: gmx::CommandLineProgramContext
- CommandLineTestHelper()
: gmx::test::CommandLineTestHelper
- commitValues()
: gmx::OptionStorageTemplate< T >
- communicateHaloCoordinates()
: gmx::GpuHaloExchange
- communicateHaloForces()
: gmx::GpuHaloExchange
- compile()
: gmx::SelectionCollection
- completeDefaultFileName()
: gmx::FileNameOptionManager
- completeFileName()
: gmx::FileNameOptionManager
- CompositeSimulatorElement()
: gmx::CompositeSimulatorElement
- ComputeGlobalsElement()
: gmx::ComputeGlobalsElement< algorithm >
- computeVirial()
: gmx::ForceWithShiftForces
- constArrayRefFromArray()
: gmx::ArrayRef< T >
- constArrayRefWithPadding()
: gmx::ArrayRefWithPadding< T >
, gmx::PaddedVector< T, Allocator >
- constBox()
: gmx::StatePropagatorData
- constForcesView()
: gmx::StatePropagatorData
- constLambdaView()
: gmx::FreeEnergyPerturbationElement
- constPositionsView()
: gmx::StatePropagatorData
- constPreviousBox()
: gmx::StatePropagatorData
- constPreviousPositionsView()
: gmx::StatePropagatorData
- ConstraintsElement()
: gmx::ConstraintsElement< variable >
- constraintVirial()
: gmx::EnergyElement
- construct()
: gmx::DefaultInitializationAllocator< T, A >
- constructPairlist()
: nonbonded_verlet_t
- constVelocitiesView()
: gmx::StatePropagatorData
- constView()
: gmx::GaussTransform3D
, gmx::MrcDensityMapOfFloatReader
- contains()
: gmx::test::CommandLine
- convert()
: gmx::OptionValueConverterSimple< OutType >
- convertCoordinates()
: nonbonded_verlet_t
- convertCoordinatesGpu()
: nonbonded_verlet_t
- convertOptionValue()
: gmx::SelectionOptionManager
- convertValue()
: gmx::OptionStorageTemplate< T >
, gmx::AbstractOptionStorage
- coordinates()
: gmx::Selection
- copyAtoms()
: gmx::TopologyInformation
- copyContents()
: gmx::AbstractAnalysisArrayData
- copyright()
: gmx::BinaryInformationSettings
- copyTot_atomtypes()
: PreprocessingAtomTypes
- count()
: gmx_ana_pos_t
- countRestraints()
: gmx::RestraintManager
- coveredFraction()
: gmx::Selection
- create()
: gmx::Any
, gmx::NonbondedBenchmarkInfo
, gmx::Any
, gmx::DensityFittingModuleInfo
, gmx::RestraintMDModule
- createArray()
: gmx::KeyValueTreeValueBuilder
- createFileMatcher()
: gmx::test::NoContentsMatch
, gmx::test::IFileMatcherSettings
, gmx::test::TextFileMatch
- createMatcher()
: gmx::test::ExactTextMatch
, gmx::test::XvgMatch
, gmx::test::ITextBlockMatcherSettings
, gmx::test::NoTextMatch
, gmx::test::ConfMatch
, gmx::test::FilteringExactTextMatch
- createModule()
: gmx::TrajectoryAnalysisCommandLineRunner
, gmx::ICommandLineOptionsModule
- createObject()
: gmx::KeyValueTreeValueBuilder
- createStorage()
: gmx::AbstractOptionSection
, gmx::AbstractOption
- cross()
: gmx::BasicVector< ValueType >
- CubicSplineTable()
: gmx::CubicSplineTable
- currentFEPState()
: gmx::FreeEnergyPerturbationElement
- currentFrame()
: gmx::AnalysisDataStorage