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- a -
a() :
gmx::anonymous_namespace{electricfield.cpp}::ElectricFieldDimension
,
gmx::UniformIntDistribution< IntType >::param_type
,
gmx::UniformRealDistribution< RealType >::param_type
,
gmx::UniformRealDistribution< RealType >
,
gmx::UniformIntDistribution< IntType >
absoluteTolerance() :
gmx::test::FloatingPointTolerance
AbstractAnalysisArrayData() :
gmx::AbstractAnalysisArrayData
AbstractAnalysisData() :
gmx::AbstractAnalysisData
AbstractAverageHistogram() :
gmx::AbstractAverageHistogram
AbstractOption() :
gmx::AbstractOption
AbstractOptionSection() :
gmx::AbstractOptionSection
AbstractOptionSectionHandle() :
gmx::AbstractOptionSectionHandle
AbstractOptionStorage() :
gmx::AbstractOptionStorage
AbstractPlotModule() :
gmx::AbstractPlotModule
acceptOptions() :
gmx::OptionsIterator
,
gmx::OptionsModifyingIterator
acceptSections() :
gmx::OptionsIterator
,
gmx::OptionsModifyingIterator
access() :
gmx::accessor_basic< ElementType >
accessor() :
gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
accumulate() :
ForeignLambdaTerms
active() :
gmx::DensityFittingOptions
add() :
gmx::test::anonymous_namespace{testoptions.cpp}::TestOptionsRegistry
,
gmx::LocalAtomSetManager
,
gmx::GaussTransform3D::Impl
,
gmx::GaussTransform3D
,
gmx::MDModules
,
gmx::SimulatorBuilder
,
gmx::ModularSimulatorAlgorithmBuilder
,
gmx::OptionManagerContainer
,
gmx::RestraintManager::Impl
addAdapter() :
gmx::OutputAdapterContainer
addArray() :
gmx::KeyValueTreeObjectBuilder
addBehavior() :
gmx::OptionsBehaviorCollection
addBlockToCorrelationIntegral() :
gmx::CorrelationBlockData
addBondAtomType() :
PreprocessingBondAtomType
addBondedTaskAssignment() :
gmx::MdrunnerBuilder
addCastConversion() :
gmx::OptionValueConverterSimple< OutType >
addCogs() :
gmx::UpdateGroupsCog
addColumn() :
gmx::TextTableFormatter
addColumnHelpTextBlock() :
gmx::TextTableFormatter
addColumnLine() :
gmx::TextTableFormatter
addColumnModule() :
gmx::AbstractAnalysisData
addConverter() :
gmx::OptionValueConverterSimple< OutType >
addCurrentExceptionAsNested() :
gmx::ExceptionInitializer
addData() :
gmx::CorrelationGrid
,
gmx::CorrelationBlockData
,
gmx::CorrelationTensor
addDefaultFileNameOption() :
gmx::FileNameOptionManager
addDependency() :
gmx::GpuForceReduction
addDomainDecomposition() :
gmx::MdrunnerBuilder
addDummyValue() :
anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage
addElectrostatics() :
gmx::MdrunnerBuilder
addError() :
gmx::EnergyCalculationFrequencyErrors
addExistingFile() :
gmx::test::TestFileInputRedirector
addFilenames() :
gmx::MdrunnerBuilder
addForceProvider() :
gmx::ForceProviders
addFrame() :
gmx::test::AnalysisDataTestInput
addFrameWithValueAndError() :
gmx::test::AnalysisDataTestInput
addFrameWithValues() :
gmx::test::AnalysisDataTestInput
addGroup() :
gmx::AbstractOptionSectionHandle
,
gmx::IOptionsContainer
,
gmx::Options
,
gmx::internal::OptionSectionImpl::Group
,
gmx::internal::OptionSectionImpl
,
gmx::analysismodules::anonymous_namespace{select.cpp}::IndexFileWriterModule
addHardwareDetectionResult() :
gmx::MdrunnerBuilder
addHardwareOptions() :
gmx::MdrunnerBuilder
addHelpTopic() :
gmx::CommandLineModuleManager
,
gmx::test::CommandLineModuleManagerTestBase
addInput() :
gmx::MdrunnerBuilder
addLifetime() :
gmx::AnalysisDataLifetimeModule::Impl
addLink() :
gmx::HelpLinks
addLogFile() :
gmx::MdrunnerBuilder
addManager() :
gmx::Options
addMethod() :
gmx::SelectionParserSymbolTable
addModule() :
gmx::AbstractAnalysisData
,
gmx::AnalysisDataModuleManager
,
gmx::CommandLineModuleManager::Impl
,
gmx::CommandLineModuleManager
,
gmx::CommandLineModuleGroup
,
gmx::CommandLineModuleGroupData
,
gmx::test::CommandLineModuleManagerTestBase
addModuleCMain() :
gmx::CommandLineModuleManager
addModuleCMainWithSettings() :
gmx::CommandLineModuleManager
addModuleGroup() :
gmx::CommandLineModuleManager
addModuleWithDescription() :
gmx::CommandLineModuleGroup
addNeighborList() :
gmx::MdrunnerBuilder
addNested() :
gmx::ExceptionInitializer
addNonBonded() :
gmx::MdrunnerBuilder
addObject() :
gmx::KeyValueTreeObjectArrayBuilder
,
gmx::KeyValueTreeObjectBuilder
addObjectArray() :
gmx::KeyValueTreeObjectBuilder
addOption() :
gmx::IOptionsContainer
,
gmx::test::CommandLine
addOptionForSelection() :
gmx::test::ModuleSelection
addOptionImpl() :
gmx::IOptionsContainer
,
gmx::internal::OptionSectionImpl::Group
,
gmx::internal::OptionSectionImpl
addOptionsBehavior() :
gmx::ICommandLineOptionsModuleSettings
addOptionsModule() :
gmx::test::CommandLineModuleManagerTestBase
addOutputEnvironment() :
gmx::MdrunnerBuilder
addPartialWeightAndCount() :
gmx::PointState
addPoint() :
gmx::EnergyDriftTracker
addPoints() :
gmx::AnalysisDataFrameAverager
addPointSet() :
gmx::internal::AnalysisDataStorageFrameData
,
gmx::test::AnalysisDataTestInputFrame
addPointSetWithValueAndError() :
gmx::test::AnalysisDataTestInputFrame
addPointSetWithValues() :
gmx::test::AnalysisDataTestInputFrame
addPositionSymbols() :
gmx::SelectionParserSymbolTable::Impl
addPotential() :
gmx::Mdrunner
addRawValue() :
gmx::KeyValueTreeObjectBuilder
addReferenceCheckerModule() :
gmx::test::AnalysisDataTestFixture
addRegexToSkip() :
gmx::test::FilteringExactTextMatch
addReplacement() :
gmx::HelpWriterContext::Impl
addReplicaExchange() :
gmx::MdrunnerBuilder
addReservedSymbols() :
gmx::SelectionParserSymbolTable::Impl
addRule() :
gmx::IKeyValueTreeTransformRules
addSection() :
gmx::IOptionsContainerWithSections
addSectionImpl() :
gmx::IOptionsContainerWithSections
,
gmx::internal::OptionSectionImpl
addSelections() :
gmx::SelectionOptionStorage
addSimulationMethod() :
gmx::MdrunnerBuilder
addStaticCheckerModule() :
gmx::test::AnalysisDataTestFixture
addStaticColumnCheckerModule() :
gmx::test::AnalysisDataTestFixture
addStaticParallelCheckerModule() :
gmx::test::AnalysisDataTestFixture
addStaticStorageCheckerModule() :
gmx::test::AnalysisDataTestFixture
addStopHandlerBuilder() :
gmx::MdrunnerBuilder
addString() :
StringTableBuilder
addSubTopic() :
gmx::AbstractCompositeHelpTopic
addSymbol() :
gmx::SelectionParserSymbolTable::Impl
addTargetFile() :
gmx::LoggerBuilder
addTargetStream() :
gmx::LoggerBuilder
addTimeUnitOption() :
gmx::TimeUnitBehavior
addToConstraintVirial() :
gmx::EnergyData
addToForceVirial() :
gmx::EnergyData
addTopic() :
gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::RootHelpTopic
,
gmx::CommandLineHelpModule
addTopology() :
gmx::test::ModuleTest
addToSpec() :
gmx::RestraintManager
addType() :
PreprocessingAtomTypes
addUniformArray() :
gmx::KeyValueTreeObjectBuilder
addUpdateTaskAssignment() :
gmx::MdrunnerBuilder
addValue() :
gmx::AnalysisDataFrameAverager
,
gmx::test::AnalysisDataTestInputPointSet
,
gmx::OptionStorageTemplate< T >
,
gmx::KeyValueTreeUniformArrayBuilder< T >
,
gmx::KeyValueTreeObjectBuilder
addValueWithError() :
gmx::test::AnalysisDataTestInputPointSet
addVariable() :
gmx::SelectionParserSymbolTable
addVirialContribution() :
gmx::ForceWithVirial
adjustFromSettings() :
gmx::CommandLineCommonOptionsHolder
adjustInputrecBasedOnModules() :
gmx::MDModules
AffineTransformation() :
gmx::AffineTransformation
AfterFrom() :
gmx::KeyValueTreeTransformRuleBuilder::AfterFrom< FromType >
ai() :
InteractionOfType
,
BondedInteraction
,
MoleculePatch
,
VsiteBondedInteraction
aj() :
BondedInteraction
,
MoleculePatch
ak() :
BondedInteraction
,
MoleculePatch
al() :
BondedInteraction
,
MoleculePatch
alignment() :
gmx::HostAllocationPolicy
,
gmx::AlignedAllocationPolicy
,
gmx::PageAlignedAllocationPolicy
allBlocksHaveSizeOne() :
gmx::RangePartitioning
allocate() :
gmx::Allocator< T, AllocationPolicy >
allocateValues() :
gmx::AbstractAnalysisArrayData
Allocator() :
gmx::Allocator< T, AllocationPolicy >
allowedValues() :
gmx::StringOptionInfo
,
gmx::EnumOptionInfo
,
gmx::StringOptionStorage
,
gmx::EnumOptionStorage
allowEmpty() :
gmx::SelectionOption
allowMissing() :
gmx::FileNameOption
,
gmx::FileNameOptionInfo
,
gmx::FileNameOptionStorage
allowMultiple() :
gmx::OptionTemplate< T, U >
allowPositionalArguments() :
gmx::CommandLineParser
allowsOnlyAtoms() :
gmx::SelectionOptionStorage
allPresent() :
gmx::AnalysisDataFrameRef
,
gmx::AnalysisDataPointSetRef
allSizes() :
gmx::UnionFinder
,
gmx::MappedUnionFinder
allValuesConsistentlySelected() :
gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator
alpha() :
gmx::GammaDistribution< RealType >::param_type
,
gmx::GammaDistribution< RealType >
am() :
BondedInteraction
AnalysisArrayData() :
gmx::AnalysisArrayData
AnalysisData() :
gmx::AnalysisData
AnalysisDataBinAverageModule() :
gmx::AnalysisDataBinAverageModule
AnalysisDataFrameHeader() :
gmx::AnalysisDataFrameHeader
AnalysisDataFrameLocalData() :
gmx::AnalysisDataFrameLocalData< ValueType >
AnalysisDataFrameLocalDataHandle() :
gmx::AnalysisDataFrameLocalDataHandle< ValueType >
AnalysisDataFrameLocalDataSetHandle() :
gmx::AnalysisDataFrameLocalDataSetHandle< ValueType >
AnalysisDataFrameRef() :
gmx::AnalysisDataFrameRef
AnalysisDataHandle() :
gmx::AnalysisDataHandle
AnalysisDataHandleImpl() :
gmx::internal::AnalysisDataHandleImpl
AnalysisDataParallelOptions() :
gmx::AnalysisDataParallelOptions
AnalysisDataPlotModule() :
gmx::AnalysisDataPlotModule
AnalysisDataPlotSettings() :
gmx::AnalysisDataPlotSettings
AnalysisDataPointSetRef() :
gmx::AnalysisDataPointSetRef
AnalysisDataProxy() :
gmx::AnalysisDataProxy
AnalysisDataSimpleHistogramModule() :
gmx::AnalysisDataSimpleHistogramModule
AnalysisDataStorage() :
gmx::AnalysisDataStorage
AnalysisDataStorageFrameData() :
gmx::internal::AnalysisDataStorageFrameData
AnalysisDataTestInput() :
gmx::test::AnalysisDataTestInput
AnalysisDataValue() :
gmx::AnalysisDataValue
AnalysisDataVectorPlotModule() :
gmx::AnalysisDataVectorPlotModule
AnalysisDataWeightedHistogramModule() :
gmx::AnalysisDataWeightedHistogramModule
AnalysisHistogramSettings() :
gmx::AnalysisHistogramSettings
AnalysisHistogramSettingsInitializer() :
gmx::AnalysisHistogramSettingsInitializer
AnalysisNeighborhood() :
gmx::AnalysisNeighborhood
AnalysisNeighborhoodPair() :
gmx::AnalysisNeighborhoodPair
AnalysisNeighborhoodPairSearch() :
gmx::AnalysisNeighborhoodPairSearch
AnalysisNeighborhoodPositions() :
gmx::AnalysisNeighborhoodPositions
AnalysisNeighborhoodSearch() :
gmx::AnalysisNeighborhoodSearch
analyzeFrame() :
gmx::analysismodules::anonymous_namespace{freevolume.cpp}::FreeVolume
,
AnalysisTemplate
,
gmx::analysismodules::anonymous_namespace{sasa.cpp}::Sasa
,
gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistance
,
gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf
,
gmx::TrajectoryAnalysisModule
AnglePositionIterator() :
gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator
Any() :
gmx::Any
APIError() :
gmx::APIError
append() :
gmx::IOptionValueStore< T >
,
gmx::KeyValueTreePath
,
gmx::MessageStringCollector
,
gmx::test::CommandLine
,
gmx::OptionValueStoreNull< T >
,
gmx::MessageStringCollector
,
gmx::internal::EnumIndexStore< EnumType >
,
gmx::test::CommandLine
,
gmx::KeyValueTreePath
appendBlock() :
gmx::RangePartitioning
appendLegend() :
gmx::AbstractPlotModule
appendListOfLists() :
gmx::ListOfLists< typename >
appendPath() :
gmx::test::TestReferenceChecker::Impl
appendText() :
gmx::LogEntryWriter
appendTextFormatted() :
gmx::LogEntryWriter
appendValue() :
gmx::AbstractOptionStorage
,
gmx::OptionsAssigner
apply() :
gmx::ITemperatureCouplingImpl
,
gmx::VRescaleTemperatureCoupling
,
gmx::BerendsenTemperatureCoupling
,
gmx::Constraints
applyBiasForcesAndUpdateBias() :
gmx::Awh
applyConstraint() :
anonymous_namespace{resourcedivision.cpp}::SingleRankChecker
applyModule() :
gmx::AbstractAnalysisData
,
gmx::AnalysisDataModuleManager
areForcesRequested() :
gmx::SelectionCollection::Impl
arg() :
gmx::test::CommandLine
argc() :
gmx::test::CommandLine
argv() :
gmx::test::CommandLine
ArrayRef() :
gmx::ArrayRef< typename >
arrayRefFromArray() :
gmx::ArrayRef< typename >
arrayRefWithPadding() :
gmx::PaddedVector< T, Allocator >
ArrayRefWithPadding() :
gmx::ArrayRefWithPadding< typename >
as_vec() :
gmx::BasicVector< ValueType >
asAbsolute() :
gmx::test::FloatingPointDifference
asConstView() :
gmx::MultiDimArray< TContainer, Extents, LayoutPolicy >
asParagraph() :
gmx::LogEntryWriter
assign() :
anonymous_namespace{evaluate.cpp}::SelelemTemporaryValueAssigner
assignOptionsToModules() :
gmx::MDModules
asUlps() :
gmx::test::FloatingPointDifference
asView() :
gmx::MultiDimArray< TContainer, Extents, LayoutPolicy >
at() :
gmx::FixedCapacityVector< T, capacity >
,
gmx::ArrayRef< typename >
,
gmx::ListOfLists< typename >
,
StringTable
,
gmx::FixedCapacityVector< T, capacity >
,
gmx::EnergyFrame
,
gmx_ga2la_t
atom() :
AtomProxy
atom2constraints_moltype() :
gmx::Constraints
atom2settle_moltype() :
gmx::Constraints
atomChargeFromAtomType() :
PreprocessingAtomTypes
atomCount() :
gmx::Selection
,
gmx::SelectionPosition
atomdata_add_nbat_f_to_f() :
nonbonded_verlet_t
atomdata_add_nbat_f_to_f_gpu() :
nonbonded_verlet_t
atomdata_init_copy_x_to_nbat_x_gpu() :
nonbonded_verlet_t
AtomDistribution() :
AtomDistribution
atomIndexEnd() :
Nbnxm::Grid
atomIndices() :
Nbnxm::GridSet
,
gmx::Selection
,
gmx::SelectionPosition
atomIsPerturbed() :
Nbnxm::Grid
AtomIterator() :
AtomIterator
atomMassFromAtomType() :
PreprocessingAtomTypes
atomName() :
AtomProxy
atomNameFromAtomType() :
PreprocessingAtomTypes
atomNameFromBondAtomType() :
PreprocessingBondAtomType
atomNonBondedParamFromAtomType() :
PreprocessingAtomTypes
atomNumberFromAtomType() :
PreprocessingAtomTypes
atomNumberFromElement() :
AtomProperties
atomNumberInMol() :
AtomProxy
AtomPair() :
gmx::AtomPair
atomParticleTypeFromAtomType() :
PreprocessingAtomTypes
AtomProperties() :
AtomProperties
AtomProxy() :
AtomProxy
AtomRange() :
AtomRange
atoms() :
InteractionOfType
,
gmx::TopologyInformation
,
InteractionOfType
atomToCluster() :
Nbnxm::Grid
atomTypeFromName() :
PreprocessingAtomTypes
average() :
gmx::AnalysisDataFrameAverager
,
gmx::AnalysisDataAverageModule
averageMCycles() :
nbnxn_cycle_t
averager() :
gmx::AnalysisDataSimpleHistogramModule
,
gmx::AnalysisDataWeightedHistogramModule
Awh() :
gmx::Awh
AwhEnergyBlock() :
gmx::AwhEnergyBlock
AwhFepLambdaStateTestParameters() :
gmx::test::AwhFepLambdaStateTestParameters
awhOutputFile() :
BiasOutputSetup
AwhReader() :
AwhReader
AwhTestParameters() :
gmx::test::AwhTestParameters
axis() :
gmx::BiasGrid
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