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- n -
N :
t_UmbrellaWindow
,
t_bb
n :
t_coordselection
,
t_methoddata_kwreal
,
methoddata_permute
,
partition
,
gmx_fft_fftpack
,
spheresurfacebin
,
t_methoddata_kwint
n_alloc :
spheresurfacebin
n_at_lam :
df_history_t
na_c :
Nbnxm::gpu_plist
na_ci :
NbnxnPairlistCpu
na_cj :
NbnxnPairlistCpu
nalloc :
t_mdatoms
,
cu_atomdata
,
cl_atomdata
,
gmx_ana_selvalue_t
,
swap_compartment
,
gmx_sparsematrix
nalloc_index :
gmx_ana_index_t
nalloc_loc :
gmx::ImdSession::Impl
nalloc_x :
gmx_ana_pos_t
name :
gmx_moltype_t
,
gmx::DataFileInfo
,
gmx::NonbondedBenchmarkInfo
,
MoleculeInformation
,
MoleculePatchDatabase
,
MoleculeType
,
gmx::SelectionTreeElement
,
t_register_method
,
gmx_ana_selmethod_t
,
gmx_ana_selparam_t
,
gmx::ConvertTprInfo
name_ :
gmx::DensityFittingModuleInfo
,
gmx::internal::OptionSectionImpl
,
gmx::SelectionParserSymbol::Impl
names :
gmx_ana_indexgrps_t
namesOfEnergiesToMatch_ :
gmx::test::anonymous_namespace{periodicactions.cpp}::PeriodicActionsTest
nas :
t_methoddata_same
nat :
gmx::ImdSession::Impl
,
ilist_data_t
,
gmx_slabdata
nat_loc :
gmx::ImdSession::Impl
nAtoms :
PmeGpuAtomParams
natoms :
gmx_pme_comm_n_box_t
,
CheckpointHeaderContents
,
TpxFileHeader
,
t_state
,
cu_atomdata
,
cl_atomdata
natoms_local :
nbnxn_atomdata_t
,
cu_atomdata
,
cl_atomdata
nAtomsAlloc :
PmeGpu
natpair_lj_ :
PairlistSet
natpair_ljq_ :
PairlistSet
natpair_q_ :
PairlistSet
nattempt :
gmx_repl_ex
nb :
t_methoddata_distance
nb_c :
gmx_wallclock_gpu_nbnxn_t
nb_d2h :
Nbnxm::gpu_timers_t::XFTransfers
nb_d2h_t :
gmx_wallclock_gpu_nbnxn_t
nb_h2d :
Nbnxm::gpu_timers_t::XFTransfers
nb_h2d_t :
gmx_wallclock_gpu_nbnxn_t
nb_k :
Nbnxm::gpu_timers_t::Interaction
nbat :
nonbonded_verlet_t
nbfp :
nbnxn_atomdata_t::Params
,
NBParamGpu
nbfp_aligned :
nbnxn_atomdata_t::Params
nbfp_comb :
nbnxn_atomdata_t::Params
,
NBParamGpu
nbfp_comb_texobj :
NBParamGpu
nbfp_texobj :
NBParamGpu
nBin :
t_UmbrellaWindow
nbins :
methoddata_insolidangle
nbl_fep :
PairsearchWork
nblock_used :
f_thread_t
,
bonded_threading_t
nblocks :
gmx_sel_mempool_t
nbnxmSimd :
Nbnxm::KernelBenchOptions
nbonded :
thread_work_t
nBootStrap :
UmbrellaOptions
nbparam :
NbnxmGpu
nbsearch :
t_methoddata_distance
nbst :
NbnxmGpu
nc :
gmx::Lincs
nc_real :
gmx::Lincs
ncc :
gmx::Lincs
ncc_triangle :
gmx::Lincs
ncg :
gmx::Lincs
ncg_flex :
gmx::Lincs
ncg_triangle :
gmx::Lincs
nChargePerturbed :
t_mdatoms
nci_tot :
NbnxnPairlistCpu
ncj4 :
Nbnxm::gpu_plist
ncj_hlj :
NbnxnPairlistCpuWork
ncj_noq :
NbnxnPairlistCpuWork
ncjInUse :
NbnxnPairlistCpu
nCoordsel :
UmbrellaOptions
nctl :
MoleculePatch
ncxy_ind :
NbnxmGpu
ncxy_ind_alloc :
NbnxmGpu
ncxy_na :
NbnxmGpu
ncxy_na_alloc :
NbnxmGpu
nCyl :
swap_group
nCylBoth :
swap_group
ndata :
gmx_sparsematrix
ndim :
gmx::AnalysisDataDisplacementModule::Impl
,
gmx_fft_fftpack
,
gmx_fft_fftw3
,
gmx_fft_mkl
,
t_pullcoord
ndim_ePBC :
t_pbc
ndisrepairs :
history_t
ndistc :
PairsearchWork
nED :
CheckpointHeaderContents
needsMasses :
gmx::SelectionTopologyProperties
needsTopology :
gmx::SelectionTopologyProperties
needToCalcCom :
pull_group_work_t
neg_2log :
nbnxn_atomdata_t::Params
neig :
anonymous_namespace{edsam.cpp}::t_eigvec
neighbor :
gmx::GridPoint
nenergrp :
t_mdatoms
,
nbnxn_atomdata_t::Params
neom :
gmx_sel_lexer_t
newBox :
gmx::OutputRequirements
newi :
MoleculePatch
newx :
MoleculePatch
nex :
gmx_repl_ex
nexchange :
gmx_repl_ex
nexcl :
Nbnxm::gpu_plist
nexpsel :
gmx_sel_lexer_t
next :
gmx_fft_fftpack
,
gmx::detail::extents_analyse< R, E0, StaticExtents...>
,
gmx::detail::extents_analyse< R, dynamic_extent, StaticExtents...>
,
gmx_ana_poscalc_t
,
gmx::SelectionTreeElement
,
t_symbuf
nextHeavyType :
VirtualSiteConfiguration
nextIndex_ :
gmx::internal::AnalysisDataStorageImpl
nextLineIndex_ :
gmx::TextTableFormatter::Impl::ColumnData
nextLineOffset_ :
gmx::TextTableFormatter::Impl::ColumnData
nextMethodSymbol :
gmx_sel_lexer_t
nextparam :
gmx_sel_lexer_t
nfile :
gmx::LegacySimulatorData
nforces :
gmx::ImdSession::Impl
ngrids :
PmeShared
ngroup :
t_pullcoord
ngrp :
t_swap
ngtc :
CheckpointHeaderContents
,
TpxFileHeader
,
t_state
nhchainlength :
t_state
,
CheckpointHeaderContents
nhpres_vxi :
gmx::PTCouplingArrays
,
t_state
nhpres_xi :
t_state
,
gmx::PTCouplingArrays
nhx :
t_bb
nHydrogens :
VirtualSiteConfiguration
nimask :
Nbnxm::gpu_plist
nIter :
gmx::Lincs
nk :
PmeShared
nLambda :
gmx::test::anonymous_namespace{freeenergyparameters.cpp}::FreeEnergyParameterTestParameters
nlambda :
CheckpointHeaderContents
,
df_history_t
nlhelp :
gmx_ana_selmethod_help_t
nlocat :
gmx::Lincs
nMassPerturbed :
t_mdatoms
nmax :
gmx::AnalysisDataDisplacementModule::Impl
nmol :
gmx_molblock_t
nMol :
swap_compartment
nMolAv :
swap_compartment
nMolBefore :
swap_compartment
nMolPast :
swap_compartment
nMolReq :
swap_compartment
nmoves :
gmx_repl_ex
nn :
PmeShared
nname :
MoleculePatch
Nnext :
t_bb
nnhpres :
CheckpointHeaderContents
,
t_state
nnodes :
CheckpointHeaderContents
nodes :
gmx::HardwareTopology::Numa
nonbondedParameters :
gmx::BenchmarkSystem
nonlocal_done :
NbnxmGpu
nOrder :
gmx::Lincs
norire_Dtav :
history_t
normalDistribution :
UmbrellaOptions
normalizationType :
gmx::AwhEnergyBlock
normalizationValue :
gmx::AwhEnergyBlock
normalizeDensities_ :
gmx::DensityFittingParameters
nosehoover_vxi :
gmx::PTCouplingArrays
,
t_state
nosehoover_xi :
gmx::PTCouplingArrays
,
t_state
nparams :
gmx_ana_selmethod_t
npbcdim :
UnitCellInfo
nPerturbed :
t_mdatoms
npme :
CheckpointHeaderContents
nPull :
t_UmbrellaWindow
npullcrds :
t_UmbrellaHeader
nr :
gmx_ana_selvalue_t
,
MoleculePatch
,
t_mdatoms
nrecv :
gmx_specatsend_t
nrepl :
gmx_repl_ex
nreq :
gmx_domdec_specat_comm_t
nrexcl :
PreprocessResidue
,
MoleculeInformation
nrms :
t_bb
nrnb :
anonymous_namespace{minimize.cpp}::EnergyEvaluator
,
gmx::Profiling
,
gmx::LegacySimulatorData
nrow :
gmx_sparsematrix
nsci :
Nbnxm::gpu_plist
nslabs_alloc :
gmx_enfrotgrp
nst :
gmx_repl_ex
nsteps_done :
gmx_walltime_accounting
nsteps_done_at_reset :
gmx_walltime_accounting
nstimd :
gmx::ImdSession::Impl
nstimd_new :
gmx::ImdSession::Impl
nstlist_cmdline :
gmx::LegacyMdrunOptions
nstlistPrune :
PairlistParams
nstored :
gmx::AnalysisDataDisplacementModule::Impl
nstpcouple :
gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters
nstrout :
gmx_enfrot
nstsout :
gmx_enfrot
ntask :
gmx::Lincs
ntbins :
methoddata_insolidangle
nth :
omp_module_nthreads_t
nthreads :
bonded_threading_t
nthreads_omp :
gmx_hw_opt_t
nthreads_omp_pme :
gmx_hw_opt_t
nthreads_tmpi :
gmx_hw_opt_t
nthreads_tot :
gmx_hw_opt_t
ntompOptionIsSet :
gmx::MdrunOptions
Ntot :
t_UmbrellaWindow
ntriangle :
gmx::Lincs
,
gmx::Task
ntric_vec :
t_pbc
nTypePerturbed :
t_mdatoms
ntypes :
cl_atomdata
,
cu_atomdata
num_defining_atomnames :
gmx_help_make_index_group
numa :
gmx::HardwareTopology::Machine
numaNodeId :
gmx::HardwareTopology::LogicalProcessor
,
gmx::HardwareTopology::Core
,
gmx::HardwareTopology::Device
numAtoms :
PpRanks
,
MoleculeType
,
AtomDistribution::DomainAtomGroups
,
gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters
numAtomsForce :
bonded_threading_t
numAtomsICluster :
Nbnxm::Grid::Geometry
numAtomsICluster2Log :
Nbnxm::Grid::Geometry
numAtomsJCluster :
Nbnxm::Grid::Geometry
numAtomsPerCell :
Nbnxm::Grid::Geometry
numAtomsPerColumn :
Nbnxm::GridWork
numAtomsPerMolecule :
MoleculeBlockIndices
numAtomTypes :
gmx::BenchmarkSystem
numBoundedDimensions :
UnitCellInfo
numCells :
Nbnxm::Grid::Dimensions
,
gmx::DomdecOptions
numColumnRowSection_ :
gmx::MrcDensityMapHeader
numConstraints :
gmx::LincsDeviations
numDDDimensions :
DDGridSetup
numDegreesOfFreedom :
gmx::TemperatureCouplingData
numDomains :
DDGridSetup
numExchanges :
ReplicaExchangeParameters
numFepLambdaStates :
gmx::DimParams::FepDimParams
numFile :
gmx::LegacyInput
numFrames :
gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTestParameters
numIterations :
Nbnxm::KernelBenchOptions
numMolecules :
MoleculeType
numOpenMPThreads :
gmx_walltime_accounting
numPmeOnlyRanks :
DDGridSetup
numPmeRanks :
gmx::DomdecOptions
numPreIterations :
Nbnxm::KernelBenchOptions
numRollingPruningParts :
PairlistParams
numSamplesUpdateFreeEnergy_ :
gmx::BiasParams
numSettles :
gmx::test::anonymous_namespace{settle.cpp}::SettleTestParameters
numSharedUpdate :
gmx::BiasParams
numSimulations_ :
gmx_multisim_t
numSteps :
gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters
numStepsCommandline :
gmx::MdrunOptions
numTCoupleGroups :
gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters
numThreads :
Nbnxm::KernelBenchOptions
numTypes :
nbnxn_atomdata_t::Params
numUsedLabels_ :
gmx::CrystallographicLabels
numWarmupIterations :
Nbnxm::KernelBenchOptions
nUse :
t_coordselection
nuse :
gmx::InterdependentTask
nvalptr :
gmx_ana_selparam_t
nvars :
gmx_ana_selcollection_t
nx :
t_matrix
,
gmx_fft_mkl
ny :
gmx_fft_mkl
,
t_matrix
nz :
gmx_fft_mkl
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