![o](ftv2node.png) gmx::ArrayRef< BoundingBox > | |
![o](ftv2node.png) gmx::ArrayRef< const AnalysisDataValue > | |
![o](ftv2node.png) gmx::ArrayRef< const char *const > | |
![o](ftv2node.png) gmx::ArrayRef< const char > | |
![o](ftv2node.png) gmx::ArrayRef< const double > | |
![o](ftv2node.png) gmx::ArrayRef< const float > | |
![o](ftv2node.png) gmx::ArrayRef< const gmx::BasicVector > | |
![o](ftv2node.png) gmx::ArrayRef< const int > | |
![o](ftv2node.png) gmx::ArrayRef< const InteractionList > | |
![o](ftv2node.png) gmx::ArrayRef< const real > | |
![o](ftv2node.png) gmx::ArrayRef< const t_filenm > | |
![o](ftv2node.png) gmx::ArrayRef< const t_iparams > | |
![o](ftv2node.png) gmx::ArrayRef< gmx::BasicVector > | |
![o](ftv2node.png) gmx::ArrayRef< gmx::gmx::BasicVector > | |
![o](ftv2node.png) gmx::ArrayRef< gmx::RVec > | |
![o](ftv2node.png) gmx::ArrayRef< PpRanks > | |
![o](ftv2node.png) gmx::ArrayRef< real > | |
![o](ftv2node.png) gmx::ArrayRef< rvec > | |
![o](ftv2node.png) gmx::ArrayRef< ValueType > | |
![o](ftv2node.png) gmx::ArrayRefWithPadding< gmx::BasicVector > | |
![o](ftv2node.png) gmx::ArrayRefWithPadding< gmx::gmx::BasicVector > | |
![o](ftv2node.png) AtomIterator | Object that allows looping over all atoms in an mtop |
![o](ftv2node.png) AtomProperties | Holds all the atom property information loaded |
![o](ftv2node.png) AtomProxy | Proxy object returned from AtomIterator |
![o](ftv2node.png) AtomRange | Range over all atoms of topology |
![o](ftv2node.png) gmx::BasicVector< double > | |
![o](ftv2node.png) gmx::BasicVector< int > | |
![o](ftv2node.png) gmx::BasicVector< real > | |
![o](ftv2node.png) CheckpointHeaderContents | Header explaining the context of a checkpoint file |
![o](ftv2node.png) df_history_t | Free-energy sampling history struct |
![o](ftv2node.png) gmx::FlagsTemplate< Flag > | |
![o](ftv2node.png) ForceHelperBuffers | Helper force buffers for ForceOutputs |
![o](ftv2node.png) ForeignLambdaTerms | Accumulates free-energy foreign lambda energies and dH/dlamba |
![o](ftv2pnode.png) gmx::AbstractAnalysisData | Abstract base class for all objects that provide data |
![|](ftv2vertline.png) ![o](ftv2pnode.png) gmx::AbstractAnalysisArrayData | Abstract base class for data objects that present in-memory data |
![|](ftv2vertline.png) ![|](ftv2vertline.png) ![o](ftv2node.png) gmx::AbstractAverageHistogram | Base class for representing histograms averaged over frames |
![|](ftv2vertline.png) ![|](ftv2vertline.png) ![o](ftv2node.png) gmx::AnalysisArrayData | Simple in-memory data array |
![|](ftv2vertline.png) ![|](ftv2vertline.png) ![o](ftv2node.png) gmx::AnalysisDataAverageModule | Data module for independently averaging each column in input data |
![|](ftv2vertline.png) ![|](ftv2vertline.png) ![o](ftv2node.png) gmx::AnalysisDataBinAverageModule | Data module for bin averages |
![|](ftv2vertline.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::AnalysisDataLifetimeModule | Data module for computing lifetime histograms for columns in input data |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::AnalysisData | Parallelizable data container for raw data |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::AnalysisDataDisplacementModule | Data module for calculating displacements |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::AnalysisDataFrameAverageModule | Data module for averaging of columns for each frame |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::AnalysisDataSimpleHistogramModule | Data module for per-frame histograms |
![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::AnalysisDataWeightedHistogramModule | Data module for per-frame weighted histograms |
![o](ftv2pnode.png) gmx::AbstractOption | Abstract base class for specifying option properties |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::OptionTemplate< T, U > | Templated base class for constructing concrete option settings classes |
![|](ftv2vertline.png) ![o](ftv2pnode.png) gmx::OptionTemplate< bool, BooleanOption > | |
![|](ftv2vertline.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::BooleanOption | Specifies an option that provides boolean values |
![|](ftv2vertline.png) ![o](ftv2pnode.png) gmx::OptionTemplate< double, DoubleOption > | |
![|](ftv2vertline.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::DoubleOption | Specifies an option that provides floating-point (double) values |
![|](ftv2vertline.png) ![o](ftv2pnode.png) gmx::OptionTemplate< EnumType, EnumOption< EnumType > > | |
![|](ftv2vertline.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::EnumOption< EnumType > | Specifies an option that accepts an EnumerationArray of string values and writes the selected index into an enum variable |
![|](ftv2vertline.png) ![o](ftv2pnode.png) gmx::OptionTemplate< EnumType, LegacyEnumOption< EnumType > > | |
![|](ftv2vertline.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::LegacyEnumOption< EnumType > | Specifies an option that accepts enumerated string values and writes the selected index into an enum variable |
![|](ftv2vertline.png) ![o](ftv2pnode.png) gmx::OptionTemplate< float, FloatOption > | |
![|](ftv2vertline.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::FloatOption | Specifies an option that provides floating-point (float) values |
![|](ftv2vertline.png) ![o](ftv2pnode.png) gmx::OptionTemplate< int, IntegerOption > | |
![|](ftv2vertline.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::IntegerOption | Specifies an option that provides integer values |
![|](ftv2vertline.png) ![o](ftv2pnode.png) gmx::OptionTemplate< int64_t, Int64Option > | |
![|](ftv2vertline.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::Int64Option | Specifies an option that provides 64-bit integer values |
![|](ftv2vertline.png) ![o](ftv2pnode.png) gmx::OptionTemplate< Selection, SelectionOption > | |
![|](ftv2vertline.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::SelectionOption | Specifies an option that provides selection(s) |
![|](ftv2vertline.png) ![o](ftv2pnode.png) gmx::OptionTemplate< std::string, FileNameOption > | |
![|](ftv2vertline.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::FileNameOption | Specifies an option that provides file names |
![|](ftv2vertline.png) ![\](ftv2plastnode.png) gmx::OptionTemplate< std::string, StringOption > | |
![|](ftv2vertline.png) ![](ftv2blank.png) ![\](ftv2lastnode.png) gmx::StringOption | Specifies an option that provides string values |
![o](ftv2pnode.png) gmx::AbstractOptionSection | Base class for specifying option section properties |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::OptionSection | Declares a simple option section |
![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::RepeatingOptionSection< T > | Declares an option section that creates a structure for each instance |
![o](ftv2node.png) gmx::AnalysisDataFrameHeader | Value type for storing frame-level information for analysis data |
![o](ftv2node.png) gmx::AnalysisDataFrameRef | Value type wrapper for non-mutable access to a data frame |
![o](ftv2node.png) gmx::AnalysisDataHandle | Handle for inserting data into AnalysisData |
![o](ftv2node.png) gmx::AnalysisDataPlotSettings | Common settings for data plots |
![o](ftv2node.png) gmx::AnalysisDataPointSetRef | Value type wrapper for non-mutable access to a set of data column values |
![o](ftv2node.png) gmx::AnalysisDataValue | Value type for representing a single value in analysis data objects |
![o](ftv2node.png) gmx::AnalysisHistogramSettings | Contains parameters that specify histogram bin locations |
![o](ftv2node.png) gmx::AnalysisHistogramSettingsInitializer | Provides "named parameter" idiom for constructing histograms |
![o](ftv2node.png) gmx::AnalysisNeighborhood | Neighborhood searching for analysis tools |
![o](ftv2node.png) gmx::AnalysisNeighborhoodPair | Value type to represent a pair of positions found in neighborhood searching |
![o](ftv2node.png) gmx::AnalysisNeighborhoodPairSearch | Initialized neighborhood pair search with a fixed set of positions |
![o](ftv2node.png) gmx::AnalysisNeighborhoodPositions | Input positions for neighborhood searching |
![o](ftv2node.png) gmx::AnalysisNeighborhoodSearch | Initialized neighborhood search with a fixed set of reference positions |
![o](ftv2node.png) gmx::ArrayRef< typename > | STL-like interface to a C array of T (or part of a std container of T) |
![o](ftv2node.png) gmx::ArrayRefWithPadding< typename > | Interface to a C array of T (or part of a std container of T), that includes padding that is suitable for the kinds of SIMD operations GROMACS uses |
![o](ftv2node.png) gmx::BasicVector< ValueType > | C++ class for 3D vectors |
![o](ftv2node.png) gmx::BenchmarkSystem | Description of the system used for benchmarking |
![o](ftv2node.png) gmx::BoxDeformationHandle | Handle to information about the box |
![o](ftv2node.png) gmx::CheckpointData< operation > | } |
![o](ftv2node.png) gmx::CommandLineHelpWriter | Writes help information for Options |
![o](ftv2node.png) gmx::CommandLineModuleSettings | Settings to pass information between a module and the general runner |
![o](ftv2node.png) gmx::CommandLineParser | Implements command-line parsing for Options objects |
![o](ftv2node.png) gmx::ConstraintsParam | Collection of constraint parameters |
![o](ftv2node.png) gmx::ConvertTprInfo | Declares gmx convert-tpr |
![o](ftv2node.png) gmx::DataFileFinder | Searches data files from a set of paths |
![o](ftv2node.png) gmx::DataFileInfo | Information about a data file found by DataFileFinder::enumerateFiles() |
![o](ftv2node.png) gmx::DataFileOptions | Search parameters for DataFileFinder |
![o](ftv2node.png) gmx::detail::PaddingTraits< T > | Traits classes for handling padding for types used with PaddedVector |
![o](ftv2node.png) gmx::ExceptionInfo< Tag, T > | Stores additional context information for exceptions |
![o](ftv2node.png) gmx::ExceptionInitializer | Provides information for Gromacs exception constructors |
![o](ftv2node.png) gmx::ExponentialDistribution< RealType > | Exponential distribution |
![o](ftv2node.png) gmx::ExponentialDistribution< RealType >::param_type | Exponential distribution parameters |
![o](ftv2node.png) gmx::FixedCapacityVector< T, capacity > | Vector that behaves likes std::vector but has fixed capacity |
![o](ftv2node.png) gmx::FlagsTemplate< FlagType > | Template class for typesafe handling of combination of flags |
![o](ftv2node.png) gmx::GammaDistribution< RealType > | Gamma distribution |
![o](ftv2node.png) gmx::GammaDistribution< RealType >::param_type | Gamma distribution parameters |
![o](ftv2pnode.png) gmx::IAnalysisDataModule | Interface for a module that gets notified whenever data is added |
![|](ftv2vertline.png) ![o](ftv2pnode.png) gmx::AnalysisDataModuleParallel | Convenience base class for parallel analysis data modules |
![|](ftv2vertline.png) ![|](ftv2vertline.png) ![o](ftv2node.png) gmx::AnalysisDataSimpleHistogramModule | Data module for per-frame histograms |
![|](ftv2vertline.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::AnalysisDataWeightedHistogramModule | Data module for per-frame weighted histograms |
![|](ftv2vertline.png) ![\](ftv2plastnode.png) gmx::AnalysisDataModuleSerial | Convenience base class for serial analysis data modules |
![|](ftv2vertline.png) ![](ftv2blank.png) ![o](ftv2pnode.png) gmx::AbstractPlotModule | Abstract data module for writing data into a file |
![|](ftv2vertline.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) gmx::AnalysisDataPlotModule | Plotting module for straightforward plotting of data |
![|](ftv2vertline.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::AnalysisDataVectorPlotModule | Plotting module specifically for data consisting of vectors |
![|](ftv2vertline.png) ![](ftv2blank.png) ![o](ftv2node.png) gmx::AnalysisDataAverageModule | Data module for independently averaging each column in input data |
![|](ftv2vertline.png) ![](ftv2blank.png) ![o](ftv2node.png) gmx::AnalysisDataBinAverageModule | Data module for bin averages |
![|](ftv2vertline.png) ![](ftv2blank.png) ![o](ftv2node.png) gmx::AnalysisDataDisplacementModule | Data module for calculating displacements |
![|](ftv2vertline.png) ![](ftv2blank.png) ![o](ftv2node.png) gmx::AnalysisDataFrameAverageModule | Data module for averaging of columns for each frame |
![|](ftv2vertline.png) ![](ftv2blank.png) ![\](ftv2lastnode.png) gmx::AnalysisDataLifetimeModule | Data module for computing lifetime histograms for columns in input data |
![o](ftv2node.png) gmx::ICommandLineModule | Module that can be run from command line using CommandLineModuleManager |
![o](ftv2node.png) gmx::ICommandLineOptionsModule | Module that can be run from a command line and uses gmx::Options for argument processing |
![o](ftv2node.png) gmx::ICommandLineOptionsModuleSettings | Settings to pass information between a CommandLineOptionsModule and generic code that runs it |
![o](ftv2node.png) gmx::IdentityFormatter | Function object to implement the same interface as StringFormatter to use with strings that should not be formatted further |
![o](ftv2node.png) gmx::InstallationPrefixInfo | Provides information about installation prefix (see IProgramContext::installationPrefix()) |
![o](ftv2node.png) gmx::InteractiveMD | SimulatorBuilder parameter type for InteractiveMD |
![o](ftv2node.png) gmx::IonSwapping | Parameter type for IonSwapping SimulatorBuilder component |
![o](ftv2pnode.png) gmx::IOptionManager | Base class for option managers |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::FileNameOptionManager | Handles interaction of file name options with global options |
![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::SelectionOptionManager | Handles interaction of selection options with other options and user input |
![o](ftv2pnode.png) gmx::IOptionsBehavior | Interface to provide extension points for options parsing |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::SelectionOptionBehavior | Options behavior to allow using SelectionOptions |
![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::TimeUnitBehavior | Options behavior to add a time unit option |
![o](ftv2pnode.png) gmx::IOptionsContainer | Interface for adding input options |
![|](ftv2vertline.png) ![\](ftv2plastnode.png) gmx::IOptionsContainerWithSections | Interface for adding input options with sections |
![|](ftv2vertline.png) ![](ftv2blank.png) ![o](ftv2pnode.png) gmx::AbstractOptionSectionHandle | Base class for handles to option sections |
![|](ftv2vertline.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) gmx::OptionSectionHandle | Allows adding options to an OptionSection |
![|](ftv2vertline.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::RepeatingOptionSectionHandle< T > | Allows adding options to an RepeatingOptionSection |
![|](ftv2vertline.png) ![](ftv2blank.png) ![\](ftv2lastnode.png) gmx::Options | Collection of options |
![o](ftv2pnode.png) gmx::IOutputAdapter | OutputAdapter class for handling trajectory file flag setting and processing |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::OutputSelector | OutputSelector class controls setting which coordinates are actually written |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::SetAtoms | SetAtoms class controls availability of atoms data |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::SetBox | Allows changing box information when writing a coordinate file |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::SetForces | SetForces class allows changing writing of forces to file |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::SetPrecision | SetPrecision class allows changing file writing precision |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::SetStartTime | SetStartTime class allows changing trajectory time information |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::SetTimeStep | SetTimeStep class allows changing trajectory time information |
![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::SetVelocities | SetVelocities class allows changing writing of velocities to file |
![o](ftv2node.png) gmx::IProgramContext | Provides context information about the program that is calling the library |
![o](ftv2node.png) gmx::IRestraintPotential | Interface for Restraint potentials |
![o](ftv2node.png) gmx::IsSerializableEnum< T, bool > | { |
![o](ftv2node.png) gmx::ITopologyProvider | Provides topology information to SelectionOptionBehavior |
![o](ftv2node.png) gmx::LegacyInput | Collection of legacy input information |
![o](ftv2node.png) gmx::ListOfLists< typename > | A list of lists, optimized for performance |
![o](ftv2node.png) gmx::MembedHolder | Membed SimulatorBuilder parameter type |
![o](ftv2node.png) gmx::MtsLevel | Setting for a single level for multiple time step integration |
![o](ftv2node.png) gmx::NonbondedBenchmarkInfo | Declares gmx nonbonded-bench |
![o](ftv2node.png) gmx::NormalDistribution< RealType > | Normal distribution |
![o](ftv2node.png) gmx::NormalDistribution< RealType >::param_type | Normal distribution parameters |
![o](ftv2pnode.png) gmx::OptionInfo | Gives information and allows modifications to an option after creation |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::BooleanOptionInfo | Wrapper class for accessing boolean option information |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::DoubleOptionInfo | Wrapper class for accessing floating-point option information |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::EnumOptionInfo | Wrapper class for accessing enum option information |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::FileNameOptionInfo | Wrapper class for accessing file name option information |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::FloatOptionInfo | Wrapper class for accessing floating-point option information |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::Int64OptionInfo | Wrapper class for accessing 64-bit integer option information |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::IntegerOptionInfo | Wrapper class for accessing integer option information |
![|](ftv2vertline.png) ![o](ftv2node.png) gmx::SelectionOptionInfo | Wrapper class for accessing and modifying selection option information |
![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::StringOptionInfo | Wrapper class for accessing string option information |
![o](ftv2node.png) gmx::OutputRequirementOptionDirector | Container for the user input values that will be used by the builder to determine which OutputAdapters should/could/will be registered to the coordinate file writer |
![o](ftv2node.png) gmx::OutputRequirements | Finalized version of requirements after processing |
![o](ftv2node.png) gmx::PaddedVector< T, Allocator > | PaddedVector is a container of elements in contiguous storage that allocates extra memory for safe SIMD-style loads for operations used in GROMACS |
![o](ftv2node.png) gmx::PotentialPointData | Structure to hold the results of IRestraintPotential::evaluate() |
![o](ftv2node.png) gmx::PrivateImplPointer< Impl > | Helper class to manage a pointer to a private implementation class |
![o](ftv2node.png) gmx::Profiling | Collection of profiling information |
![o](ftv2node.png) gmx::Range< typename > | Defines a range of integer numbers and accompanying operations |
![o](ftv2node.png) gmx::Range< typename >::iterator | An iterator that loops over a range of integers |
![o](ftv2node.png) gmx::RangePartitioning | Division of a range of indices into consecutive blocks |
![o](ftv2node.png) gmx::Selection | Provides access to a single selection |
![o](ftv2node.png) gmx::SelectionCollection | Collection of selections |
![o](ftv2node.png) gmx::SelectionPosition | Provides access to information about a single selected position |
![o](ftv2node.png) gmx::SelectionTopologyProperties | Describes topology properties required for selection evaluation |
![o](ftv2node.png) gmx::SimulationSignal | POD-style object used by mdrun ranks to set and receive signals within and between simulations |
![o](ftv2node.png) gmx::SimulationSignaller | Object used by mdrun ranks to signal to each other at this step |
![o](ftv2node.png) gmx::SimulatorConfig | Simulation configuation settings |
![o](ftv2node.png) gmx::SimulatorEnv | Collection of environmental information for a simulation |
![o](ftv2node.png) gmx::SimulatorStateData | Data for a specific simulation state |
![o](ftv2node.png) gmx::StaticLog2< n > | Evaluate log2(n) for integer n statically at compile time |
![o](ftv2node.png) gmx::StaticLog2< 0 > | Specialization of StaticLog2<n> for n==0 |
![o](ftv2node.png) gmx::StaticLog2< 1 > | Specialization of StaticLog2<n> for n==1 |
![o](ftv2node.png) gmx::StringFormatter | Function object that wraps a call to formatString() that expects a single conversion argument, for use with algorithms |
![o](ftv2node.png) gmx::TabulatedNormalDistribution< RealType, tableBits > | Tabulated normal random distribution |
![o](ftv2node.png) gmx::TabulatedNormalDistribution< RealType, tableBits >::param_type | Normal distribution parameter class (mean and stddev) |
![o](ftv2node.png) gmx::TextLineWrapper | Wraps lines to a predefined length |
![o](ftv2node.png) gmx::TextLineWrapperSettings | Stores settings for line wrapping |
![o](ftv2node.png) gmx::ThreeFry2x64General< rounds, internalCounterBits > | General implementation class for ThreeFry counter-based random engines |
![o](ftv2node.png) gmx::TimeUnitManager | Provides common functionality for time unit conversions |
![o](ftv2node.png) gmx::TopologyData | Collection of handles to topology information |
![o](ftv2node.png) gmx::TrajectoryAnalysisCommandLineRunner | Runner for command-line trajectory analysis tools |
![o](ftv2node.png) gmx::TrajectoryAnalysisModule | Base class for trajectory analysis modules |
![o](ftv2node.png) gmx::TrajectoryAnalysisModuleData | Base class for thread-local data storage during trajectory analysis |
![o](ftv2node.png) gmx::TrajectoryAnalysisSettings | Trajectory analysis module configuration object |
![o](ftv2node.png) gmx::TrajectoryFileOpener | Low level method to take care of only file opening and closing |
![o](ftv2node.png) gmx::TrajectoryFrameWriter | Writes coordinate frames to a sink, e.g. a trajectory file |
![o](ftv2node.png) gmx::UniformIntDistribution< IntType > | Uniform integer distribution |
![o](ftv2node.png) gmx::UniformIntDistribution< IntType >::param_type | Uniform int distribution parameters |
![o](ftv2node.png) gmx::UniformRealDistribution< RealType > | Uniform real distribution |
![o](ftv2node.png) gmx::UniformRealDistribution< RealType >::param_type | Uniform real distribution parameters |
![o](ftv2node.png) gmx_ana_index_t | Stores a single index group |
![o](ftv2node.png) gmx_ana_indexmap_t | Data structure for calculating index group mappings |
![o](ftv2node.png) gmx_ana_pos_t | Stores a set of positions together with their origins |
![o](ftv2node.png) gmx_cache_protect_t | Cache-line protection buffer |
![o](ftv2node.png) gmx_enerdata_t | Struct for accumulating all potential energy terms and some kinetic energy terms |
![o](ftv2node.png) gmx_ffparams_t | Struct that holds all force field parameters for the simulated system |
![o](ftv2node.png) gmx_localtop_t | The fully written out topology for a domain over its lifetime |
![o](ftv2node.png) gmx_molblock_t | Block of molecules of the same type, used in gmx_mtop_t |
![o](ftv2node.png) gmx_moltype_t | Molecules type data: atoms, interactions and exclusions |
![o](ftv2node.png) gmx_sparsematrix | Sparse matrix storage format |
![o](ftv2node.png) InteractionListHandle | Type for returning a list of InteractionList references |
![o](ftv2node.png) gmx::ListOfLists< int > | |
![o](ftv2node.png) MoleculeBlockIndices | Indices for a gmx_molblock_t, derived from other gmx_mtop_t contents |
![o](ftv2node.png) Nbnxm::Grid::Dimensions | The physical dimensions of a grid |
![o](ftv2node.png) nbnxn_cj4_t | Four-way j-cluster lists |
![o](ftv2node.png) nbnxn_cj_t | This is the actual cluster-pair list j-entry |
![o](ftv2node.png) nbnxn_cycle_t | Local cycle count struct for profiling |
![o](ftv2node.png) nbnxn_excl_t | Struct for storing the atom-pair interaction bits for a cluster pair in a GPU pairlist |
![o](ftv2node.png) nbnxn_im_ei_t | Interaction data for a j-group for one warp |
![o](ftv2node.png) nbnxn_sci | Grouped pair-list i-unit |
![o](ftv2node.png) NbnxnPairlistCpu | Cluster pairlist type for use on CPUs |
![o](ftv2node.png) NbnxnPairlistCpuWork | Working data for the actual i-supercell during pair search |
![o](ftv2node.png) NbnxnPairlistCpuWork::IClusterData | Struct for storing coordinats and bounding box for an i-entry during search |
![o](ftv2node.png) gmx::PaddedVector< gmx::BasicVector > | |
![o](ftv2node.png) gmx::PaddedVector< gmx::gmx::BasicVector > | |
![o](ftv2node.png) gmx::PaddedVector< gmx::RVec > | |
![o](ftv2node.png) gmx::PaddedVector< real > | |
![o](ftv2node.png) gmx::PaddedVector< RVec > | |
![o](ftv2node.png) PairlistSets | Contains sets of pairlists |
![o](ftv2node.png) PairSearch | Main pair-search struct, contains the grid(s), not the pair-list(s) |
![o](ftv2node.png) PairsearchWork | Thread-local work struct, contains working data for Grid |
![o](ftv2node.png) PartialDeserializedTprFile | Contains the partly deserialized contents of a TPR file |
![o](ftv2node.png) PbcAiuc | Compact and ordered version of the PBC matrix |
![o](ftv2node.png) gmx::PrivateImplPointer< internal::FileStreamImpl > | |
![o](ftv2node.png) gmx::PrivateImplPointer< internal::KeyValueTreeTransformerImpl > | |
![o](ftv2node.png) gmx::PrivateImplPointer< internal::OptionsImpl > | |
![o](ftv2node.png) gmx::Range< int > | |
![o](ftv2node.png) SimulationGroups | Contains the simulation atom groups |
![o](ftv2node.png) SimulationInputHandle | Owning handle to a SimulationInput object |
![o](ftv2pnode.png) std::exception | STL class |
![|](ftv2vertline.png) ![\](ftv2plastnode.png) gmx::GromacsException | Base class for all exception objects in Gromacs |
![|](ftv2vertline.png) ![](ftv2blank.png) ![o](ftv2pnode.png) gmx::APIError | Exception class for incorrect use of an API |
![|](ftv2vertline.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) gmx::NotImplementedError | Exception class for use of an unimplemented feature |
![|](ftv2vertline.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::ParallelConsistencyError | Exception class for use when ensuring that MPI ranks to throw in a coordinated fashion |
![|](ftv2vertline.png) ![](ftv2blank.png) ![o](ftv2node.png) gmx::FileIOError | Exception class for file I/O errors |
![|](ftv2vertline.png) ![](ftv2blank.png) ![o](ftv2node.png) gmx::InternalError | Exception class for internal errors |
![|](ftv2vertline.png) ![](ftv2blank.png) ![o](ftv2pnode.png) gmx::ModularSimulatorError | Exception class for modular simulator |
![|](ftv2vertline.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) gmx::CheckpointError | Exception class signalling an error in reading or writing modular checkpoints |
![|](ftv2vertline.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) gmx::ElementNotFoundError | Exception class signalling that a requested element was not found |
![|](ftv2vertline.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) gmx::MissingElementConnectionError | Exception class signalling that elements were not connected properly |
![|](ftv2vertline.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::SimulationAlgorithmSetupError | Exception class signalling that the ModularSimulatorAlgorithm was set up in an incompatible way |
![|](ftv2vertline.png) ![](ftv2blank.png) ![o](ftv2node.png) gmx::RangeError | Exception class for out-of-range values or indices |
![|](ftv2vertline.png) ![](ftv2blank.png) ![o](ftv2node.png) gmx::SimulationInstabilityError | Exception class for simulation instabilities |
![|](ftv2vertline.png) ![](ftv2blank.png) ![o](ftv2node.png) gmx::ToleranceError | Exception class when a specified tolerance cannot be achieved |
![|](ftv2vertline.png) ![](ftv2blank.png) ![\](ftv2plastnode.png) gmx::UserInputError | Exception class for user input errors |
![|](ftv2vertline.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) gmx::InconsistentInputError | Exception class for situations where user input is inconsistent |
![|](ftv2vertline.png) ![](ftv2blank.png) ![](ftv2blank.png) ![\](ftv2lastnode.png) gmx::InvalidInputError | Exception class for situations where user input cannot be parsed/understood |
![o](ftv2node.png) StringTable | A class to store strings for lookup |
![o](ftv2node.png) StringTableEntry | Helper class to access members in StringTable |
![o](ftv2node.png) t_filenm | File name option definition for C code |
![o](ftv2node.png) t_mapping | Maps an XPM element to an RGB color and a string description |
![o](ftv2node.png) t_matrix | A matrix of integers, plus supporting values, such as used in XPM output |
![o](ftv2node.png) t_mdatoms | Declares mdatom data structure |
![o](ftv2node.png) t_pargs | Command-line argument definition for C code |
![o](ftv2node.png) t_pbc | Structure containing info on periodic boundary conditions |
![o](ftv2node.png) t_state | The microstate of the system |
![o](ftv2node.png) t_xpmelmt | Models an XPM element |
![o](ftv2pnode.png) gmx::ThreeFry2x64General< 13, internalCounterBits > | |
![|](ftv2vertline.png) ![\](ftv2lastnode.png) gmx::ThreeFry2x64Fast< internalCounterBits > | ThreeFry2x64 random engine with 13 iteractions |
![\](ftv2plastnode.png) gmx::ThreeFry2x64General< 20, internalCounterBits > | |
![](ftv2blank.png) ![\](ftv2lastnode.png) gmx::ThreeFry2x64< internalCounterBits > | ThreeFry2x64 random engine with 20 iteractions |