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- d -
dd_atom_spread_real() :
domdec.h
dd_atom_sum_real() :
domdec.h
dd_bcast() :
domdec_network.h
,
domdec_network.cpp
dd_bcastc() :
domdec_network.cpp
,
domdec_network.h
dd_bonded_cg_distance() :
domdec.h
dd_bonded_molpbc() :
domdec.h
dd_check_ftype() :
domdec_topology.cpp
dd_clear_f_vsites() :
domdec.h
,
domdec_vsite.cpp
dd_clear_local_constraint_indices() :
domdec_constraints.cpp
,
domdec_constraints.h
dd_clear_local_vsite_indices() :
domdec_vsite.cpp
,
domdec_vsite.h
dd_collect_state() :
collect.h
dd_collect_vec() :
collect.h
dd_constraints_nlocalatoms() :
domdec.h
,
domdec_constraints.cpp
dd_cycles_add() :
domdec.h
dd_dist2() :
domdec_topology.cpp
dd_dlb_get_should_check_whether_to_turn_dlb_on() :
dlb.cpp
,
dlb.h
dd_dlb_is_locked() :
dlb.cpp
,
dlb.h
dd_dlb_is_on() :
dlb.cpp
,
dlb.h
dd_dlb_lock() :
dlb.cpp
,
dlb.h
dd_dlb_set_should_check_whether_to_turn_dlb_on() :
dlb.cpp
,
dlb.h
dd_dlb_unlock() :
dlb.cpp
,
dlb.h
dd_f_imbal() :
partition.cpp
dd_force_flop_start() :
dlbtiming.h
dd_force_flop_stop() :
dlbtiming.h
dd_force_imb_perf_loss() :
partition.cpp
dd_force_load() :
partition.cpp
dd_force_load_fraction() :
partition.cpp
dd_gather() :
domdec_network.cpp
,
domdec_network.h
dd_gatherv() :
domdec_network.cpp
,
domdec_network.h
dd_get_constraint_range() :
domdec.h
dd_init_bondeds() :
domdec.h
dd_init_local_state() :
domdec.h
,
domdec_topology.cpp
dd_load_count() :
utility.h
dd_load_flags() :
partition.cpp
dd_make_local_constraints() :
domdec_constraints.cpp
,
domdec_constraints.h
dd_make_local_ed_indices() :
edsam.h
dd_make_local_group_indices() :
groupcoord.h
dd_make_local_pull_groups() :
pull.h
dd_make_local_top() :
domdec.h
,
domdec_topology.cpp
dd_make_local_vsites() :
domdec_vsite.cpp
,
domdec_vsite.h
dd_make_reverse_top() :
domdec.h
,
domdec_topology.cpp
dd_moleculesAreAlwaysWhole() :
domdec.h
dd_move_cellx() :
partition.cpp
dd_move_f() :
domdec.h
dd_move_f_specat() :
domdec_specatomcomm.cpp
,
domdec_specatomcomm.h
dd_move_f_vsites() :
domdec.h
,
domdec_vsite.cpp
dd_move_x() :
domdec.h
dd_move_x_constraints() :
domdec.h
,
domdec_constraints.cpp
dd_move_x_specat() :
domdec_specatomcomm.cpp
,
domdec_specatomcomm.h
dd_move_x_vsites() :
domdec.h
,
domdec_vsite.cpp
dd_natoms_mdatoms() :
domdec.h
dd_natoms_vsite() :
domdec.h
dd_numAtomsZones() :
domdec.h
dd_numHomeAtoms() :
domdec.h
dd_partition_system() :
partition.cpp
,
partition.h
dd_pme_f_ratio() :
dlb.cpp
,
dlb.h
dd_pme_maxshift_x() :
domdec.h
dd_pme_maxshift_y() :
domdec.h
dd_pmeredist_f() :
pme_redistribute.cpp
,
pme_redistribute.h
dd_pmeredist_pos_coeffs() :
pme_redistribute.cpp
dd_print_load() :
partition.cpp
dd_print_load_verbose() :
partition.cpp
dd_print_missing_interactions() :
domdec.h
,
domdec_topology.cpp
dd_redistribute_cg() :
redistribute.h
dd_resize_atominfo_and_state() :
utility.cpp
,
utility.h
dd_scatter() :
domdec_network.cpp
,
domdec_network.h
dd_scatterv() :
domdec_network.cpp
,
domdec_network.h
dd_sendrecv2_rvec() :
domdec_network.cpp
,
domdec_network.h
dd_set_cginfo() :
partition.cpp
dd_setup_dlb_resource_sharing() :
domdec.h
dd_sort_local_top() :
domdec.h
,
domdec_topology.cpp
dd_sort_order_nbnxn() :
partition.cpp
dd_sort_state() :
partition.cpp
dd_store_state() :
domdec.h
dd_vol_min() :
partition.cpp
ddBalanceRegionAllocate() :
dlbtiming.h
ddcginfo() :
utility.h
ddglatnr() :
domdec.h
ddHaveSplitConstraints() :
domdec.h
DDMASTER() :
domdec_struct.h
ddReopenBalanceRegionCpu() :
dlbtiming.h
ddSendrecv() :
domdec_network.cpp
,
domdec_network.h
ddSendrecv< gmx::RVec >() :
domdec_network.h
ddSendrecv< int >() :
domdec_network.h
ddSendrecv< real >() :
domdec_network.h
ddSendrecv< rvec >() :
domdec_network.h
ddUsesUpdateGroups() :
domdec.h
deserializeDeviceInformations() :
device_management.h
,
device_management_common.cpp
destroyParamLookupTable() :
devicebuffer_sycl.h
,
devicebuffer_ocl.h
detect_flux_per_channel() :
swapcoords.cpp
detect_flux_per_channel_init() :
swapcoords.cpp
deviceIdIsCompatible() :
device_management_common.cpp
,
device_management.h
diagonalize_orires_tensors() :
orires.h
dih_angle() :
bonded.h
dim2char() :
utility.h
,
utility.cpp
directListIsFaster() :
ga2la.cpp
distributeState() :
distribute.h
div_round_up() :
pme.cpp
div_up() :
domdec_setup.cpp
divide_bondeds_by_locality() :
manage_threading.cpp
divide_bondeds_over_threads() :
manage_threading.cpp
do_ac_core() :
autocorr.cpp
do_autocorr() :
autocorr.cpp
,
autocorr.h
do_bootstrapping() :
gmx_wham.cpp
do_box_rel() :
boxutilities.cpp
do_dih_fup() :
bonded.h
do_edsam() :
edsam.h
do_em_step() :
minimize.cpp
do_ewald() :
ewald.h
,
ewald.cpp
do_flood() :
edsam.h
do_four_core() :
autocorr.cpp
do_lmfit() :
expfit.cpp
,
expfit.h
do_pairs() :
pairs.h
,
pairs.cpp
do_pairs_general() :
pairs.cpp
do_pairs_simple() :
pairs.cpp
do_pbc_first_mtop() :
pbc.cpp
do_pbc_mtop() :
pbc.cpp
do_redist_pos_coeffs() :
pme_redistribute.h
,
pme_redistribute.cpp
do_rotation() :
pull_rotation.h
do_swapcoords() :
swapcoords.cpp
,
swapcoords.h
do_view() :
viewit.h
domainToDomainIntoAtomToDomainCutoff() :
utility.h
domdec_zones() :
domdec.h
done_symtab() :
symtab.h
,
symtab.cpp
dsaupd() :
gmx_arpack.h
dseupd() :
gmx_arpack.h
dump_pbc() :
pbc.cpp
dump_tmp() :
autocorr.cpp
duplicateSymtab() :
symtab.h
,
symtab.cpp
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