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src
gromacs
gromacs → include Relation
File in src/gromacs
Includes file in src/include
math
/
3dtransforms.cpp
gmxpre.h
analysisdata
/
abstractdata.cpp
gmxpre.h
options
/
abstractoption.cpp
gmxpre.h
options
/
tests
/
abstractoptionstorage.cpp
gmxpre.h
options
/
abstractsection.cpp
gmxpre.h
mdspan
/
tests
/
accessor_policy.cpp
gmxpre.h
gmxpreprocess
/
add_par.cpp
gmxpre.h
utility
/
alignedallocator.cpp
gmxpre.h
utility
/
tests
/
alignedallocator.cpp
gmxpre.h
gmxana
/
anadih.cpp
gmxpre.h
analysisdata
/
tests
/
analysisdata.cpp
gmxpre.h
analysisdata
/
analysisdata.cpp
gmxpre.h
trajectoryanalysis
/
analysismodule.cpp
gmxpre.h
trajectoryanalysis
/
analysissettings.cpp
gmxpre.h
trajectoryanalysis
/
tests
/
angle.cpp
gmxpre.h
trajectoryanalysis
/
modules
/
angle.cpp
gmxpre.h
gmxana
/
angle_correction.cpp
gmxpre.h
utility
/
any.cpp
gmxpre.h
analysisdata
/
tests
/
arraydata.cpp
gmxpre.h
analysisdata
/
arraydata.cpp
gmxpre.h
utility
/
tests
/
arrayref.cpp
gmxpre.h
math
/
tests
/
arrayrefwithpadding.cpp
gmxpre.h
nbnxm
/
atomdata.cpp
gmxpre.h
domdec
/
atomdistribution.cpp
gmxpre.h
topology
/
atomprop.cpp
gmxpre.h
topology
/
atoms.cpp
gmxpre.h
topology
/
atomsbuilder.cpp
gmxpre.h
correlationfunctions
/
tests
/
autocorr.cpp
gmxpre.h
correlationfunctions
/
autocorr.cpp
gmxpre.h
analysisdata
/
tests
/
average.cpp
gmxpre.h
analysisdata
/
modules
/
average.cpp
gmxpre.h
applied_forces
/
awh
/
awh.cpp
gmxpre.h
mdtypes
/
awh_history.cpp
gmxpre.h
applied_forces
/
awh
/
tests
/
awh_setup.cpp
gmxpre.h
applied_forces
/
awh
/
tests
/
awh_setup.h
gmxpre.h
simd
/
tests
/
base.cpp
gmxpre.h
utility
/
basenetwork.cpp
gmxpre.h
utility
/
baseversion.cpp
gmxpre.h
options
/
basicoptions.cpp
gmxpre.h
options
/
behaviorcollection.cpp
gmxpre.h
nbnxm
/
benchmark
/
bench_setup.cpp
gmxpre.h
nbnxm
/
benchmark
/
bench_system.cpp
gmxpre.h
applied_forces
/
awh
/
tests
/
bias.cpp
gmxpre.h
applied_forces
/
awh
/
bias.cpp
gmxpre.h
applied_forces
/
awh
/
tests
/
bias_fep_lambda_state.cpp
gmxpre.h
applied_forces
/
awh
/
tests
/
biasgrid.cpp
gmxpre.h
applied_forces
/
awh
/
biasgrid.cpp
gmxpre.h
applied_forces
/
awh
/
biasparams.cpp
gmxpre.h
applied_forces
/
awh
/
tests
/
biassharing.cpp
gmxpre.h
applied_forces
/
awh
/
biassharing.cpp
gmxpre.h
applied_forces
/
awh
/
tests
/
biasstate.cpp
gmxpre.h
applied_forces
/
awh
/
biasstate.cpp
gmxpre.h
applied_forces
/
awh
/
biaswriter.cpp
gmxpre.h
utility
/
binaryinformation.cpp
gmxpre.h
gmxana
/
binsearch.cpp
gmxpre.h
utility
/
tests
/
bitmask128.cpp
gmxpre.h
utility
/
tests
/
bitmask32.cpp
gmxpre.h
utility
/
tests
/
bitmask64.cpp
gmxpre.h
topology
/
block.cpp
gmxpre.h
listed_forces
/
tests
/
bonded.cpp
gmxpre.h
listed_forces
/
bonded.cpp
gmxpre.h
simd
/
tests
/
bootstrap_loadstore.cpp
gmxpre.h
domdec
/
box.cpp
gmxpre.h
mdlib
/
boxdeformation.cpp
gmxpre.h
pbcutil
/
boxutilities.cpp
gmxpre.h
mdlib
/
broadcaststructs.cpp
gmxpre.h
coordinateio
/
tests
/
builder.cpp
gmxpre.h
mdlib
/
tests
/
calc_verletbuf.cpp
gmxpre.h
mdlib
/
calc_verletbuf.cpp
gmxpre.h
fft
/
calcgrid.cpp
gmxpre.h
gmxpreprocess
/
calch.cpp
gmxpre.h
mdlib
/
calcmu.cpp
gmxpre.h
ewald
/
calculate_spline_moduli.cpp
gmxpre.h
mdlib
/
tests
/
calcvir.cpp
gmxpre.h
mdlib
/
calcvir.cpp
gmxpre.h
domdec
/
cellsizes.cpp
gmxpre.h
selection
/
centerofmass.cpp
gmxpre.h
tools
/
check.cpp
gmxpre.h
fileio
/
tests
/
checkpoint.cpp
gmxpre.h
fileio
/
checkpoint.cpp
gmxpre.h
mdtypes
/
tests
/
checkpointdata.cpp
gmxpre.h
mdtypes
/
checkpointdata.cpp
gmxpre.h
mdlib
/
checkpointhandler.cpp
gmxpre.h
modularsimulator
/
checkpointhelper.cpp
gmxpre.h
gpu_utils
/
tests
/
clfftinitializer.cpp
gmxpre.h
gpu_utils
/
clfftinitializer.cpp
gmxpre.h
gmxana
/
cluster_methods.cpp
gmxpre.h
trajectoryanalysis
/
tests
/
clustsize.cpp
gmxpre.h
gmxana
/
cmat.cpp
gmxpre.h
commandline
/
cmdlinehelpcontext.cpp
gmxpre.h
commandline
/
tests
/
cmdlinehelpmodule.cpp
gmxpre.h
commandline
/
cmdlinehelpmodule.cpp
gmxpre.h
commandline
/
tests
/
cmdlinehelpwriter.cpp
gmxpre.h
commandline
/
cmdlinehelpwriter.cpp
gmxpre.h
commandline
/
cmdlineinit.cpp
gmxpre.h
commandline
/
cmdlinemodule.cpp
gmxpre.h
commandline
/
tests
/
cmdlinemodulemanager.cpp
gmxpre.h
commandline
/
cmdlinemodulemanager.cpp
gmxpre.h
commandline
/
tests
/
cmdlinemodulemanagertest.cpp
gmxpre.h
commandline
/
cmdlineoptionsmodule.cpp
gmxpre.h
commandline
/
tests
/
cmdlineparser.cpp
gmxpre.h
commandline
/
cmdlineparser.cpp
gmxpre.h
commandline
/
tests
/
cmdlineprogramcontext.cpp
gmxpre.h
commandline
/
cmdlineprogramcontext.cpp
gmxpre.h
trajectoryanalysis
/
cmdlinerunner.cpp
gmxpre.h
trajectoryanalysis
/
tests
/
cmdlinerunner.cpp
gmxpre.h
domdec
/
collect.cpp
gmxpre.h
pbcutil
/
tests
/
com.cpp
gmxpre.h
pbcutil
/
com.cpp
gmxpre.h
mimic
/
communicator.cpp
gmxpre.h
mimic
/
communicator_stub.cpp
gmxpre.h
utility
/
compare.cpp
gmxpre.h
selection
/
compiler.cpp
gmxpre.h
modularsimulator
/
compositesimulatorelement.cpp
gmxpre.h
mdlib
/
compute_io.cpp
gmxpre.h
modularsimulator
/
computeglobalselement.cpp
gmxpre.h
domdec
/
computemultibodycutoffs.cpp
gmxpre.h
fileio
/
tests
/
confio.cpp
gmxpre.h
fileio
/
confio.cpp
gmxpre.h
gmxlib
/
conformation_utilities.cpp
gmxpre.h
mdlib
/
tests
/
constr.cpp
gmxpre.h
mdlib
/
constr.cpp
gmxpre.h
modularsimulator
/
constraintelement.cpp
gmxpre.h
mdlib
/
constraintrange.cpp
gmxpre.h
mdlib
/
tests
/
constrtestdata.cpp
gmxpre.h
mdlib
/
tests
/
constrtestrunners.cpp
gmxpre.h
mdlib
/
tests
/
constrtestrunners_gpu.cpp
gmxpre.h
tools
/
tests
/
convert-tpr.cpp
gmxpre.h
tools
/
convert_tpr.cpp
gmxpre.h
trajectoryanalysis
/
tests
/
convert_trj.cpp
gmxpre.h
trajectoryanalysis
/
modules
/
convert_trj.cpp
gmxpre.h
gmxpreprocess
/
convparm.cpp
gmxpre.h
utility
/
coolstuff.cpp
gmxpre.h
coordinateio
/
coordinatefile.cpp
gmxpre.h
math
/
tests
/
coordinatetransformation.cpp
gmxpre.h
math
/
coordinatetransformation.cpp
gmxpre.h
applied_forces
/
awh
/
coordstate.cpp
gmxpre.h
correlationfunctions
/
tests
/
correlationdataset.cpp
gmxpre.h
applied_forces
/
awh
/
correlationgrid.cpp
gmxpre.h
applied_forces
/
awh
/
correlationhistory.cpp
gmxpre.h
applied_forces
/
awh
/
correlationtensor.cpp
gmxpre.h
mdlib
/
coupling.cpp
gmxpre.h
hardware
/
tests
/
cpuinfo.cpp
gmxpre.h
hardware
/
cpuinfo.cpp
gmxpre.h
correlationfunctions
/
crosscorr.cpp
gmxpre.h
utility
/
cstringutil.cpp
gmxpre.h
utility
/
tests
/
cstringutil.cpp
gmxpre.h
tables
/
cubicsplinetable.cpp
gmxpre.h
timing
/
cyclecounter.cpp
gmxpre.h
utility
/
datafilefinder.cpp
gmxpre.h
analysisdata
/
dataframe.cpp
gmxpre.h
analysisdata
/
datamodule.cpp
gmxpre.h
analysisdata
/
datamodulemanager.cpp
gmxpre.h
analysisdata
/
dataproxy.cpp
gmxpre.h
analysisdata
/
datastorage.cpp
gmxpre.h
analysisdata
/
tests
/
datatest.cpp
gmxpre.h
taskassignment
/
decidegpuusage.cpp
gmxpre.h
taskassignment
/
decidesimulationworkload.cpp
gmxpre.h
utility
/
tests
/
defaultinitializationallocator.cpp
gmxpre.h
gmxana
/
dens_filter.cpp
gmxpre.h
math
/
tests
/
densityfit.cpp
gmxpre.h
math
/
densityfit.cpp
gmxpre.h
applied_forces
/
densityfitting
/
tests
/
densityfitting.cpp
gmxpre.h
applied_forces
/
densityfitting
/
densityfitting.cpp
gmxpre.h
applied_forces
/
densityfitting
/
tests
/
densityfittingamplitudelookup.cpp
gmxpre.h
applied_forces
/
densityfitting
/
densityfittingamplitudelookup.cpp
gmxpre.h
math
/
tests
/
densityfittingforce.cpp
gmxpre.h
math
/
densityfittingforce.cpp
gmxpre.h
applied_forces
/
densityfitting
/
tests
/
densityfittingforceprovider.cpp
gmxpre.h
applied_forces
/
densityfitting
/
densityfittingforceprovider.cpp
gmxpre.h
applied_forces
/
densityfitting
/
tests
/
densityfittingoptions.cpp
gmxpre.h
applied_forces
/
densityfitting
/
densityfittingoptions.cpp
gmxpre.h
applied_forces
/
densityfitting
/
densityfittingoutputprovider.cpp
gmxpre.h
applied_forces
/
densityfitting
/
densityfittingparameters.cpp
gmxpre.h
hardware
/
detecthardware.cpp
gmxpre.h
gpu_utils
/
tests
/
device_availability.cpp
gmxpre.h
gpu_utils
/
tests
/
device_buffer.cpp
gmxpre.h
gpu_utils
/
device_context.cpp
gmxpre.h
gpu_utils
/
device_context_ocl.cpp
gmxpre.h
gpu_utils
/
device_context_sycl.cpp
gmxpre.h
hardware
/
tests
/
device_management.cpp
gmxpre.h
hardware
/
device_management.cpp
gmxpre.h
hardware
/
device_management_common.cpp
gmxpre.h
hardware
/
device_management_ocl.cpp
gmxpre.h
hardware
/
device_management_sycl.cpp
gmxpre.h
gpu_utils
/
device_stream.cpp
gmxpre.h
gpu_utils
/
tests
/
device_stream_manager.cpp
gmxpre.h
gpu_utils
/
device_stream_manager.cpp
gmxpre.h
gpu_utils
/
device_stream_ocl.cpp
gmxpre.h
gpu_utils
/
device_stream_sycl.cpp
gmxpre.h
gpu_utils
/
devicebuffer_sycl.cpp
gmxpre.h
gpu_utils
/
tests
/
devicetransfers.cpp
gmxpre.h
gpu_utils
/
tests
/
devicetransfers_ocl.cpp
gmxpre.h
gpu_utils
/
tests
/
devicetransfers_sycl.cpp
gmxpre.h
mdtypes
/
df_history.cpp
gmxpre.h
utility
/
directoryenumerator.cpp
gmxpre.h
mdlib
/
dispersioncorrection.cpp
gmxpre.h
analysisdata
/
modules
/
displacement.cpp
gmxpre.h
listed_forces
/
disre.cpp
gmxpre.h
trajectoryanalysis
/
tests
/
distance.cpp
gmxpre.h
trajectoryanalysis
/
modules
/
distance.cpp
gmxpre.h
domdec
/
distribute.cpp
gmxpre.h
domdec
/
dlb.cpp
gmxpre.h
domdec
/
dlbtiming.cpp
gmxpre.h
gmxana
/
dlist.cpp
gmxpre.h
math
/
do_fit.cpp
gmxpre.h
math
/
tests
/
dofit.cpp
gmxpre.h
domdec
/
domdec.cpp
gmxpre.h
domdec
/
domdec_constraints.cpp
gmxpre.h
domdec
/
domdec_network.cpp
gmxpre.h
domdec
/
domdec_setup.cpp
gmxpre.h
domdec
/
domdec_specatomcomm.cpp
gmxpre.h
domdec
/
domdec_vsite.cpp
gmxpre.h
modularsimulator
/
domdechelper.cpp
gmxpre.h
tools
/
dump.cpp
gmxpre.h
tools
/
tests
/
dump.cpp
gmxpre.h
domdec
/
dump.cpp
gmxpre.h
mdlib
/
tests
/
ebin.cpp
gmxpre.h
mdlib
/
ebin.cpp
gmxpre.h
gmxpreprocess
/
tests
/
editconf.cpp
gmxpre.h
gmxpreprocess
/
editconf.cpp
gmxpre.h
essentialdynamics
/
edsam.cpp
gmxpre.h
linearalgebra
/
eigensolver.cpp
gmxpre.h
gmxana
/
eigio.cpp
gmxpre.h
applied_forces
/
tests
/
electricfield.cpp
gmxpre.h
applied_forces
/
electricfield.cpp
gmxpre.h
tools
/
eneconv.cpp
gmxpre.h
mdlib
/
enerdata_utils.cpp
gmxpre.h
modularsimulator
/
energydata.cpp
gmxpre.h
mdlib
/
tests
/
energydrifttracker.cpp
gmxpre.h
mdlib
/
energydrifttracker.cpp
gmxpre.h
trajectory
/
energyframe.cpp
gmxpre.h
mdtypes
/
energyhistory.cpp
gmxpre.h
mdlib
/
tests
/
energyoutput.cpp
gmxpre.h
mdlib
/
energyoutput.cpp
gmxpre.h
gmxana
/
tests
/
entropy.cpp
gmxpre.h
utility
/
tests
/
enumerationhelpers.cpp
gmxpre.h
fileio
/
enxio.cpp
gmxpre.h
utility
/
errorcodes.cpp
gmxpre.h
utility
/
errorformat.cpp
gmxpre.h
fileio
/
espio.cpp
gmxpre.h
selection
/
evaluate.cpp
gmxpre.h
ewald
/
ewald.cpp
gmxpre.h
ewald
/
ewald_utils.cpp
gmxpre.h
utility
/
exceptions.cpp
gmxpre.h
topology
/
exclusionblocks.cpp
gmxpre.h
topology
/
tests
/
exclusionblocks.cpp
gmxpre.h
mdlib
/
tests
/
expanded.cpp
gmxpre.h
mdlib
/
expanded.cpp
gmxpre.h
mdlib
/
expanded_internal.cpp
gmxpre.h
modularsimulator
/
expandedensembleelement.cpp
gmxpre.h
correlationfunctions
/
tests
/
expfit.cpp
gmxpre.h
correlationfunctions
/
expfit.cpp
gmxpre.h
random
/
tests
/
exponentialdistribution.cpp
gmxpre.h
math
/
tests
/
exponentialmovingaverage.cpp
gmxpre.h
math
/
exponentialmovingaverage.cpp
gmxpre.h
mdspan
/
tests
/
extensions.cpp
gmxpre.h
mdspan
/
tests
/
extents.cpp
gmxpre.h
trajectoryanalysis
/
tests
/
extract_cluster.cpp
gmxpre.h
trajectoryanalysis
/
modules
/
extract_cluster.cpp
gmxpre.h
utility
/
fatalerror.cpp
gmxpre.h
gmxpreprocess
/
fflibutil.cpp
gmxpre.h
fft
/
tests
/
fft.cpp
gmxpre.h
fft
/
fft.cpp
gmxpre.h
fft
/
fft5d.cpp
gmxpre.h
fft
/
fft_fftpack.cpp
gmxpre.h
fft
/
fft_fftw3.cpp
gmxpre.h
fft
/
fft_mkl.cpp
gmxpre.h
fft
/
tests
/
fft_mpi.cpp
gmxpre.h
fileio
/
tests
/
fileioxdrserializer.cpp
gmxpre.h
fileio
/
tests
/
filemd5.cpp
gmxpre.h
options
/
tests
/
filenameoption.cpp
gmxpre.h
options
/
filenameoption.cpp
gmxpre.h
options
/
tests
/
filenameoptionmanager.cpp
gmxpre.h
options
/
filenameoptionmanager.cpp
gmxpre.h
commandline
/
tests
/
filenm.cpp
gmxpre.h
commandline
/
filenm.cpp
gmxpre.h
utility
/
fileredirector.cpp
gmxpre.h
utility
/
filestream.cpp
gmxpre.h
fileio
/
filetypes.cpp
gmxpre.h
taskassignment
/
findallgputasks.cpp
gmxpre.h
modularsimulator
/
firstorderpressurecoupling.cpp
gmxpre.h
gmxana
/
fitahx.cpp
gmxpre.h
utility
/
tests
/
fixedcapacityvector.cpp
gmxpre.h
mdlib
/
force.cpp
gmxpre.h
mdtypes
/
tests
/
forcebuffers.cpp
gmxpre.h
mdtypes
/
forcebuffers.cpp
gmxpre.h
modularsimulator
/
forceelement.cpp
gmxpre.h
topology
/
forcefieldparameters.cpp
gmxpre.h
mdlib
/
forcerec.cpp
gmxpre.h
tables
/
forcetable.cpp
gmxpre.h
analysisdata
/
modules
/
frameaverager.cpp
gmxpre.h
mdrunutility
/
freeenergy.cpp
gmxpre.h
nbnxm
/
freeenergydispatch.cpp
gmxpre.h
mdlib
/
tests
/
freeenergyparameters.cpp
gmxpre.h
mdlib
/
freeenergyparameters.cpp
gmxpre.h
modularsimulator
/
freeenergyperturbationdata.cpp
gmxpre.h
trajectoryanalysis
/
tests
/
freevolume.cpp
gmxpre.h
trajectoryanalysis
/
modules
/
freevolume.cpp
gmxpre.h
math
/
tests
/
functions.cpp
gmxpre.h
math
/
functions.cpp
gmxpre.h
utility
/
futil.cpp
gmxpre.h
fileio
/
g96io.cpp
gmxpre.h
domdec
/
ga2la.cpp
gmxpre.h
random
/
tests
/
gammadistribution.cpp
gmxpre.h
math
/
tests
/
gausstransform.cpp
gmxpre.h
math
/
gausstransform.cpp
gmxpre.h
gmxpreprocess
/
gen_ad.cpp
gmxpre.h
gmxpreprocess
/
gen_maxwell_velocities.cpp
gmxpre.h
gmxpreprocess
/
gen_vsite.cpp
gmxpre.h
gmxpreprocess
/
tests
/
genconf.cpp
gmxpre.h
gmxpreprocess
/
genconf.cpp
gmxpre.h
gmxpreprocess
/
genhydro.cpp
gmxpre.h
gmxpreprocess
/
tests
/
genion.cpp
gmxpre.h
gmxpreprocess
/
genion.cpp
gmxpre.h
gmxpreprocess
/
tests
/
genrestr.cpp
gmxpre.h
gmxpreprocess
/
genrestr.cpp
gmxpre.h
gmxana
/
gmx_anaeig.cpp
gmxpre.h
gmxana
/
gmx_analyze.cpp
gmxpre.h
gmxana
/
gmx_angle.cpp
gmxpre.h
linearalgebra
/
gmx_arpack.cpp
gmxpre.h
gmxana
/
gmx_awh.cpp
gmxpre.h
gmxana
/
gmx_bar.cpp
gmxpre.h
gmxana
/
gmx_bundle.cpp
gmxpre.h
gmxana
/
tests
/
gmx_chi.cpp
gmxpre.h
gmxana
/
gmx_chi.cpp
gmxpre.h
gmxana
/
gmx_cluster.cpp
gmxpre.h
gmxana
/
gmx_clustsize.cpp
gmxpre.h
gmxana
/
gmx_confrms.cpp
gmxpre.h
gmxana
/
gmx_covar.cpp
gmxpre.h
gmxana
/
gmx_current.cpp
gmxpre.h
gmxana
/
gmx_density.cpp
gmxpre.h
gmxana
/
gmx_densmap.cpp
gmxpre.h
gmxana
/
gmx_densorder.cpp
gmxpre.h
gmxana
/
gmx_dielectric.cpp
gmxpre.h
gmxana
/
gmx_dipoles.cpp
gmxpre.h
gmxana
/
gmx_disre.cpp
gmxpre.h
gmxana
/
gmx_do_dssp.cpp
gmxpre.h
gmxana
/
gmx_dos.cpp
gmxpre.h
gmxana
/
gmx_dyecoupl.cpp
gmxpre.h
gmxana
/
gmx_enemat.cpp
gmxpre.h
gmxana
/
gmx_energy.cpp
gmxpre.h
gmxana
/
gmx_filter.cpp
gmxpre.h
gmxana
/
gmx_gyrate.cpp
gmxpre.h
gmxana
/
gmx_h2order.cpp
gmxpre.h
gmxana
/
gmx_hbond.cpp
gmxpre.h
gmxana
/
gmx_helix.cpp
gmxpre.h
gmxana
/
gmx_helixorient.cpp
gmxpre.h
gmxana
/
gmx_hydorder.cpp
gmxpre.h
fileio
/
gmx_internal_xdr.cpp
gmxpre.h
gmxana
/
gmx_lie.cpp
gmxpre.h
correlationfunctions
/
gmx_lmcurve.cpp
gmxpre.h
gmxana
/
gmx_make_edi.cpp
gmxpre.h
gmxana
/
tests
/
gmx_make_ndx.cpp
gmxpre.h
gmxana
/
gmx_mdmat.cpp
gmxpre.h
gmxana
/
tests
/
gmx_mindist.cpp
gmxpre.h
gmxana
/
gmx_mindist.cpp
gmxpre.h
gmxana
/
gmx_nmeig.cpp
gmxpre.h
gmxana
/
gmx_nmens.cpp
gmxpre.h
gmxana
/
gmx_nmr.cpp
gmxpre.h
gmxana
/
gmx_nmtraj.cpp
gmxpre.h
mdlib
/
gmx_omp_nthreads.cpp
gmxpre.h
gmxana
/
gmx_order.cpp
gmxpre.h
gmxana
/
gmx_polystat.cpp
gmxpre.h
gmxana
/
gmx_potential.cpp
gmxpre.h
gmxana
/
gmx_principal.cpp
gmxpre.h
gmxana
/
gmx_rama.cpp
gmxpre.h
gmxana
/
gmx_rms.cpp
gmxpre.h
gmxana
/
gmx_rmsdist.cpp
gmxpre.h
gmxana
/
gmx_rmsf.cpp
gmxpre.h
gmxana
/
gmx_rotacf.cpp
gmxpre.h
gmxana
/
gmx_rotmat.cpp
gmxpre.h
gmxana
/
gmx_saltbr.cpp
gmxpre.h
gmxana
/
gmx_sans.cpp
gmxpre.h
gmxana
/
gmx_saxs.cpp
gmxpre.h
gmxana
/
gmx_sham.cpp
gmxpre.h
gmxana
/
gmx_sigeps.cpp
gmxpre.h
gmxana
/
gmx_sorient.cpp
gmxpre.h
gmxana
/
gmx_spatial.cpp
gmxpre.h
gmxana
/
gmx_spol.cpp
gmxpre.h
gmxana
/
gmx_tcaf.cpp
gmxpre.h
gmxana
/
tests
/
gmx_traj.cpp
gmxpre.h
gmxana
/
gmx_traj.cpp
gmxpre.h
gmxana
/
gmx_trjorder.cpp
gmxpre.h
gmxana
/
gmx_vanhove.cpp
gmxpre.h
gmxana
/
gmx_velacc.cpp
gmxpre.h
gmxana
/
gmx_wham.cpp
gmxpre.h
gmxana
/
gmx_wheel.cpp
gmxpre.h
gmxana
/
gmx_xpm2ps.cpp
gmxpre.h
utility
/
gmxassert.cpp
gmxpre.h
gmxpreprocess
/
gmxcpp.cpp
gmxpre.h
fileio
/
gmxfio.cpp
gmxpre.h
fileio
/
gmxfio_xdr.cpp
gmxpre.h
utility
/
gmxomp.cpp
gmxpre.h
gmxpreprocess
/
tests
/
gpp_atomtype.cpp
gmxpre.h
gmxpreprocess
/
gpp_atomtype.cpp
gmxpre.h
gmxpreprocess
/
tests
/
gpp_bond_atomtype.cpp
gmxpre.h
gmxpreprocess
/
gpp_bond_atomtype.cpp
gmxpre.h
gmxpreprocess
/
gpp_nextnb.cpp
gmxpre.h
fft
/
gpu_3dfft.cpp
gmxpre.h
fft
/
gpu_3dfft_heffte.cpp
gmxpre.h
fft
/
gpu_3dfft_ocl.cpp
gmxpre.h
fft
/
gpu_3dfft_sycl.cpp
gmxpre.h
fft
/
gpu_3dfft_sycl_mkl.cpp
gmxpre.h
fft
/
gpu_3dfft_sycl_rocfft.cpp
gmxpre.h
gpu_utils
/
gpu_utils.cpp
gmxpre.h
gpu_utils
/
tests
/
gpueventsynchronizer.cpp
gmxpre.h
mdlib
/
gpuforcereduction_impl.cpp
gmxpre.h
mdlib
/
gpuforcereduction_impl_internal_sycl.cpp
gmxpre.h
mdlib
/
gpuforcereduction_impl_stubs.cpp
gmxpre.h
domdec
/
gpuhaloexchange_impl.cpp
gmxpre.h
nbnxm
/
grid.cpp
gmxpre.h
nbnxm
/
gridset.cpp
gmxpre.h
fileio
/
groio.cpp
gmxpre.h
gmxpreprocess
/
grompp.cpp
gmxpre.h
gmxpreprocess
/
tests
/
grompp_directives.cpp
gmxpre.h
mdtypes
/
group.cpp
gmxpre.h
mdlib
/
groupcoord.cpp
gmxpre.h
gmxpreprocess
/
h_db.cpp
gmxpre.h
gmxpreprocess
/
hackblock.cpp
gmxpre.h
domdec
/
tests
/
haloexchange_mpi.cpp
gmxpre.h
mdrunutility
/
handlerestart.cpp
gmxpre.h
hardware
/
tests
/
hardwaretopology.cpp
gmxpre.h
hardware
/
hardwaretopology.cpp
gmxpre.h
domdec
/
tests
/
hashedmap.cpp
gmxpre.h
onlinehelp
/
tests
/
helpformat.cpp
gmxpre.h
onlinehelp
/
helpformat.cpp
gmxpre.h
onlinehelp
/
tests
/
helpmanager.cpp
gmxpre.h
onlinehelp
/
helpmanager.cpp
gmxpre.h
onlinehelp
/
helptopic.cpp
gmxpre.h
onlinehelp
/
tests
/
helpwritercontext.cpp
gmxpre.h
onlinehelp
/
helpwritercontext.cpp
gmxpre.h
tools
/
tests
/
helpwriting.cpp
gmxpre.h
analysisdata
/
tests
/
histogram.cpp
gmxpre.h
analysisdata
/
modules
/
histogram.cpp
gmxpre.h
applied_forces
/
awh
/
histogramsize.cpp
gmxpre.h
gmxpreprocess
/
hizzie.cpp
gmxpre.h
gpu_utils
/
tests
/
hostallocator.cpp
gmxpre.h
gpu_utils
/
hostallocator.cpp
gmxpre.h
gmxana
/
hxprops.cpp
gmxpre.h
topology
/
idef.cpp
gmxpre.h
topology
/
tests
/
idef.cpp
gmxpre.h
hardware
/
identifyavx512fmaunits.cpp
gmxpre.h
mdtypes
/
iforceprovider.cpp
gmxpre.h
topology
/
ifunc.cpp
gmxpre.h
utility
/
ikeyvaluetreeerror.cpp
gmxpre.h
imd
/
imd.cpp
gmxpre.h
imd
/
imdsocket.cpp
gmxpre.h
topology
/
index.cpp
gmxpre.h
selection
/
tests
/
indexutil.cpp
gmxpre.h
selection
/
indexutil.cpp
gmxpre.h
utility
/
init.cpp
gmxpre.h
utility
/
inmemoryserializer.cpp
gmxpre.h
utility
/
tests
/
inmemoryserializer.cpp
gmxpre.h
mdtypes
/
inputrec.cpp
gmxpre.h
gmxpreprocess
/
tests
/
insert_molecules.cpp
gmxpre.h
gmxpreprocess
/
insert_molecules.cpp
gmxpre.h
utility
/
int64_to_int.cpp
gmxpre.h
correlationfunctions
/
integrate.cpp
gmxpre.h
mdtypes
/
interaction_const.cpp
gmxpre.h
topology
/
invblock.cpp
gmxpre.h
math
/
tests
/
invertmatrix.cpp
gmxpre.h
math
/
invertmatrix.cpp
gmxpre.h
nbnxm
/
kernel_common.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEw_VdwLJ_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEw_VdwLJ_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEw_VdwLJ_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEw_VdwLJ_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEw_VdwLJ_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEw_VdwLJ_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEw_VdwLJCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEw_VdwLJCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEw_VdwLJCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEw_VdwLJCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEw_VdwLJCombLB_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEw_VdwLJCombLB_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEw_VdwLJCombLB_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEw_VdwLJCombLB_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEw_VdwLJCombLB_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEw_VdwLJCombLB_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEw_VdwLJEwCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEw_VdwLJEwCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEw_VdwLJEwCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEw_VdwLJEwCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEw_VdwLJFSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEw_VdwLJFSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEw_VdwLJFSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEw_VdwLJFSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEw_VdwLJFSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEw_VdwLJFSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEw_VdwLJPSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEw_VdwLJPSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEw_VdwLJPSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEw_VdwLJPSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEw_VdwLJPSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEw_VdwLJPSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEwTwinCut_VdwLJ_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEwTwinCut_VdwLJ_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEwTwinCut_VdwLJ_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEwTwinCut_VdwLJ_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEwTwinCut_VdwLJFSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEwTwinCut_VdwLJFSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEwTwinCut_VdwLJPSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEwTwinCut_VdwLJPSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTab_VdwLJ_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTab_VdwLJ_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTab_VdwLJ_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTab_VdwLJ_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTab_VdwLJ_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTab_VdwLJ_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTab_VdwLJCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTab_VdwLJCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTab_VdwLJCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTab_VdwLJCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTab_VdwLJCombLB_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTab_VdwLJCombLB_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTab_VdwLJCombLB_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTab_VdwLJCombLB_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTab_VdwLJFSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTab_VdwLJFSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTab_VdwLJFSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTab_VdwLJFSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTab_VdwLJPSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTab_VdwLJPSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTab_VdwLJPSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTab_VdwLJPSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTabTwinCut_VdwLJ_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTabTwinCut_VdwLJ_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecRF_VdwLJ_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecRF_VdwLJ_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecRF_VdwLJ_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecRF_VdwLJ_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecRF_VdwLJ_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecRF_VdwLJ_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecRF_VdwLJCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecRF_VdwLJCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecRF_VdwLJCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecRF_VdwLJCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecRF_VdwLJCombLB_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecRF_VdwLJCombLB_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecRF_VdwLJCombLB_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecRF_VdwLJCombLB_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecRF_VdwLJCombLB_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecRF_VdwLJCombLB_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecRF_VdwLJEwCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecRF_VdwLJEwCombGeom_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecRF_VdwLJEwCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecRF_VdwLJEwCombGeom_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecRF_VdwLJFSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecRF_VdwLJFSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecRF_VdwLJFSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecRF_VdwLJFSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecRF_VdwLJFSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecRF_VdwLJFSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecRF_VdwLJPSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecRF_VdwLJPSw_F.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecRF_VdwLJPSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecRF_VdwLJPSw_VF.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_ElecRF_VdwLJPSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_ElecRF_VdwLJPSw_VgrpF.cpp
gmxpre.h
nbnxm
/
kernels_reference
/
kernel_gpu_ref.cpp
gmxpre.h
nbnxm
/
kernels_simd_4xm
/
kernel_prune.cpp
gmxpre.h
nbnxm
/
kernels_simd_2xmm
/
kernel_prune.cpp
gmxpre.h
nbnxm
/
kernels_reference
/
kernel_ref.cpp
gmxpre.h
nbnxm
/
kernels_reference
/
kernel_ref_prune.cpp
gmxpre.h
nbnxm
/
kerneldispatch.cpp
gmxpre.h
nbnxm
/
tests
/
kernelsetup.cpp
gmxpre.h
utility
/
keyvaluetree.cpp
gmxpre.h
utility
/
keyvaluetreemdpwriter.cpp
gmxpre.h
utility
/
keyvaluetreeserializer.cpp
gmxpre.h
utility
/
tests
/
keyvaluetreeserializer.cpp
gmxpre.h
utility
/
keyvaluetreetransform.cpp
gmxpre.h
utility
/
tests
/
keyvaluetreetransform.cpp
gmxpre.h
mdspan
/
tests
/
layouts.cpp
gmxpre.h
mdlib
/
tests
/
leapfrog.cpp
gmxpre.h
mdlib
/
leapfrog_gpu.cpp
gmxpre.h
mdlib
/
leapfrog_gpu_internal_sycl.cpp
gmxpre.h
mdlib
/
tests
/
leapfrogtestdata.cpp
gmxpre.h
mdlib
/
tests
/
leapfrogtestrunners.cpp
gmxpre.h
mdlib
/
tests
/
leapfrogtestrunners_gpu.cpp
gmxpre.h
energyanalysis
/
tests
/
legacyenergy.cpp
gmxpre.h
mdrun
/
legacymdrunoptions.cpp
gmxpre.h
mdrun
/
legacysimulator.cpp
gmxpre.h
fileio
/
libxdrf.cpp
gmxpre.h
analysisdata
/
tests
/
lifetime.cpp
gmxpre.h
analysisdata
/
modules
/
lifetime.cpp
gmxpre.h
mdlib
/
lincs.cpp
gmxpre.h
mdlib
/
lincs_gpu.cpp
gmxpre.h
listed_forces
/
listed_forces.cpp
gmxpre.h
listed_forces
/
listed_forces_gpu_impl.cpp
gmxpre.h
listed_forces
/
listed_internal.cpp
gmxpre.h
utility
/
tests
/
listoflists.cpp
gmxpre.h
domdec
/
localatomset.cpp
gmxpre.h
domdec
/
localatomsetdata.cpp
gmxpre.h
domdec
/
tests
/
localatomsetmanager.cpp
gmxpre.h
domdec
/
localatomsetmanager.cpp
gmxpre.h
domdec
/
localtopology.cpp
gmxpre.h
domdec
/
localtopologychecker.cpp
gmxpre.h
utility
/
logger.cpp
gmxpre.h
utility
/
tests
/
logger.cpp
gmxpre.h
utility
/
loggerbuilder.cpp
gmxpre.h
mdrunutility
/
logging.cpp
gmxpre.h
ewald
/
long_range_correction.cpp
gmxpre.h
tools
/
make_ndx.cpp
gmxpre.h
domdec
/
makebondedlinks.cpp
gmxpre.h
gmxpreprocess
/
makeexclusiondistances.cpp
gmxpre.h
listed_forces
/
manage_threading.cpp
gmxpre.h
restraint
/
tests
/
manager.cpp
gmxpre.h
restraint
/
manager.cpp
gmxpre.h
correlationfunctions
/
tests
/
manyautocorrelation.cpp
gmxpre.h
correlationfunctions
/
manyautocorrelation.cpp
gmxpre.h
fileio
/
matio.cpp
gmxpre.h
math
/
tests
/
matrix.cpp
gmxpre.h
math
/
matrix.cpp
gmxpre.h
linearalgebra
/
matrix.cpp
gmxpre.h
mdrun
/
md.cpp
gmxpre.h
fileio
/
md5.cpp
gmxpre.h
mdtypes
/
md_enums.cpp
gmxpre.h
mdlib
/
md_support.cpp
gmxpre.h
mdlib
/
mdatoms.cpp
gmxpre.h
mdlib
/
mdebin_bar.cpp
gmxpre.h
mdrun
/
mdmodules.cpp
gmxpre.h
utility
/
tests
/
mdmodulesnotifier.cpp
gmxpre.h
mdlib
/
mdoutf.cpp
gmxpre.h
domdec
/
mdsetup.cpp
gmxpre.h
mdspan
/
tests
/
mdspan.cpp
gmxpre.h
mdlib
/
membed.cpp
gmxpre.h
mdrun
/
membedholder.cpp
gmxpre.h
selection
/
mempool.cpp
gmxpre.h
utility
/
message_string_collector.cpp
gmxpre.h
utility
/
tests
/
message_string_collector.cpp
gmxpre.h
mdrun
/
mimic.cpp
gmxpre.h
mdrun
/
minimize.cpp
gmxpre.h
tools
/
mk_angndx.cpp
gmxpre.h
analysisdata
/
tests
/
mock_datamodule.cpp
gmxpre.h
onlinehelp
/
tests
/
mock_helptopic.cpp
gmxpre.h
modularsimulator
/
modularsimulator.cpp
gmxpre.h
trajectoryanalysis
/
modules.cpp
gmxpre.h
trajectoryanalysis
/
tests
/
moduletest.cpp
gmxpre.h
compat
/
tests
/
mp11.cpp
gmxpre.h
fileio
/
tests
/
mrcdensitymap.cpp
gmxpre.h
fileio
/
mrcdensitymap.cpp
gmxpre.h
fileio
/
tests
/
mrcdensitymapheader.cpp
gmxpre.h
fileio
/
mrcdensitymapheader.cpp
gmxpre.h
fileio
/
tests
/
mrcserializer.cpp
gmxpre.h
fileio
/
mrcserializer.cpp
gmxpre.h
trajectoryanalysis
/
tests
/
msd.cpp
gmxpre.h
trajectoryanalysis
/
modules
/
msd.cpp
gmxpre.h
pbcutil
/
tests
/
mshift.cpp
gmxpre.h
pbcutil
/
mshift.cpp
gmxpre.h
topology
/
tests
/
mtop.cpp
gmxpre.h
topology
/
mtop_util.cpp
gmxpre.h
modularsimulator
/
mttk.cpp
gmxpre.h
fileio
/
mtxio.cpp
gmxpre.h
math
/
tests
/
multidimarray.cpp
gmxpre.h
mdtypes
/
tests
/
multipletimestepping.cpp
gmxpre.h
mdtypes
/
multipletimestepping.cpp
gmxpre.h
mdrunutility
/
multisim.cpp
gmxpre.h
gmxlib
/
nonbonded
/
tests
/
nb_free_energy.cpp
gmxpre.h
gmxlib
/
nonbonded
/
nb_free_energy.cpp
gmxpre.h
nbnxm
/
nbnxm.cpp
gmxpre.h
nbnxm
/
nbnxm_geometry.cpp
gmxpre.h
nbnxm
/
nbnxm_gpu_buffer_ops.cpp
gmxpre.h
nbnxm
/
opencl
/
nbnxm_gpu_buffer_ops_internal_ocl.cpp
gmxpre.h
nbnxm
/
sycl
/
nbnxm_gpu_buffer_ops_internal_sycl.cpp
gmxpre.h
nbnxm
/
nbnxm_gpu_data_mgmt.cpp
gmxpre.h
nbnxm
/
opencl
/
nbnxm_ocl.cpp
gmxpre.h
nbnxm
/
opencl
/
nbnxm_ocl_data_mgmt.cpp
gmxpre.h
nbnxm
/
opencl
/
nbnxm_ocl_jit_support.cpp
gmxpre.h
nbnxm
/
nbnxm_setup.cpp
gmxpre.h
nbnxm
/
sycl
/
nbnxm_sycl.cpp
gmxpre.h
nbnxm
/
sycl
/
nbnxm_sycl_data_mgmt.cpp
gmxpre.h
nbnxm
/
sycl
/
nbnxm_sycl_kernel.cpp
gmxpre.h
nbnxm
/
sycl
/
nbnxm_sycl_kernel_pruneonly.cpp
gmxpre.h
selection
/
tests
/
nbsearch.cpp
gmxpre.h
selection
/
nbsearch.cpp
gmxpre.h
math
/
tests
/
neldermead.cpp
gmxpre.h
math
/
neldermead.cpp
gmxpre.h
gmxlib
/
network.cpp
gmxpre.h
utility
/
niceheader.cpp
gmxpre.h
gmxpreprocess
/
nm2type.cpp
gmxpre.h
random
/
tests
/
normaldistribution.cpp
gmxpre.h
modularsimulator
/
nosehooverchains.cpp
gmxpre.h
gmxana
/
nrama.cpp
gmxpre.h
linearalgebra
/
nrjac.cpp
gmxpre.h
gmxlib
/
nrnb.cpp
gmxpre.h
gmxana
/
nsfactor.cpp
gmxpre.h
domdec
/
nsgrid.cpp
gmxpre.h
mdtypes
/
observableshistory.cpp
gmxpre.h
mdtypes
/
tests
/
observablesreducer.cpp
gmxpre.h
mdtypes
/
observablesreducer.cpp
gmxpre.h
gpu_utils
/
ocl_caching.cpp
gmxpre.h
gpu_utils
/
ocl_compiler.cpp
gmxpre.h
gpu_utils
/
oclutils.cpp
gmxpre.h
fileio
/
oenv.cpp
gmxpre.h
math
/
tests
/
optimization.cpp
gmxpre.h
math
/
optimization.cpp
gmxpre.h
options
/
tests
/
option.cpp
gmxpre.h
options
/
options.cpp
gmxpre.h
options
/
tests
/
optionsassigner.cpp
gmxpre.h
options
/
optionsassigner.cpp
gmxpre.h
options
/
optionsection.cpp
gmxpre.h
options
/
optionsvisitor.cpp
gmxpre.h
listed_forces
/
orires.cpp
gmxpre.h
pulling
/
output.cpp
gmxpre.h
coordinateio
/
tests
/
outputadaptercontainer.cpp
gmxpre.h
coordinateio
/
outputadaptercontainer.cpp
gmxpre.h
coordinateio
/
tests
/
outputadapters.cpp
gmxpre.h
coordinateio
/
tests
/
outputadapters.h
gmxpre.h
coordinateio
/
outputadapters
/
outputselector.cpp
gmxpre.h
math
/
tests
/
paddedvector.cpp
gmxpre.h
trajectoryanalysis
/
tests
/
pairdist.cpp
gmxpre.h
trajectoryanalysis
/
modules
/
pairdist.cpp
gmxpre.h
nbnxm
/
pairlist.cpp
gmxpre.h
nbnxm
/
pairlist_tuning.cpp
gmxpre.h
nbnxm
/
pairlistparams.cpp
gmxpre.h
nbnxm
/
pairlistset.cpp
gmxpre.h
listed_forces
/
tests
/
pairs.cpp
gmxpre.h
listed_forces
/
pairs.cpp
gmxpre.h
nbnxm
/
pairsearch.cpp
gmxpre.h
fft
/
parallel_3dfft.cpp
gmxpre.h
selection
/
params.cpp
gmxpre.h
commandline
/
tests
/
pargs.cpp
gmxpre.h
commandline
/
pargs.cpp
gmxpre.h
modularsimulator
/
parrinellorahmanbarostat.cpp
gmxpre.h
selection
/
parsetree.cpp
gmxpre.h
domdec
/
partition.cpp
gmxpre.h
utility
/
path.cpp
gmxpre.h
utility
/
tests
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path.cpp
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