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src
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mdrun
mdrun → gromacs Relation
File in src/programs/mdrun
Includes file in src/gromacs
tests
/
checkpoint.cpp
utility
/
strconvert.h
tests
/
checkpoint.cpp
utility
/
stringutil.h
tests
/
compressed_x_output.cpp
options
/
filenameoption.h
tests
/
densityfittingmodule.cpp
utility
/
stringutil.h
tests
/
energycomparison.cpp
utility
/
basenetwork.h
tests
/
energycomparison.cpp
utility
/
strconvert.h
tests
/
energycomparison.cpp
utility
/
stringutil.h
tests
/
energyreader.cpp
utility
/
stringutil.h
tests
/
energyreader.h
utility
/
classhelpers.h
tests
/
energyreader.h
utility
/
unique_cptr.h
tests
/
ewaldsurfaceterm.cpp
utility
/
basenetwork.h
tests
/
ewaldsurfaceterm.cpp
utility
/
filestream.h
tests
/
ewaldsurfaceterm.cpp
utility
/
strconvert.h
tests
/
ewaldsurfaceterm.cpp
utility
/
stringutil.h
tests
/
exactcontinuation.cpp
utility
/
stringutil.h
tests
/
freeenergy.cpp
utility
/
filestream.h
tests
/
freeenergy.cpp
utility
/
path.h
tests
/
freeenergy.cpp
utility
/
stringutil.h
tests
/
freezegroups.cpp
utility
/
stringutil.h
tests
/
helpwriting.cpp
commandline
/
cmdlinehelpcontext.h
tests
/
helpwriting.cpp
utility
/
stringstream.h
tests
/
helpwriting.cpp
utility
/
textwriter.h
tests
/
initialconstraints.cpp
utility
/
stringutil.h
tests
/
interactiveMD.cpp
utility
/
stringutil.h
mdrun.cpp
utility
/
basenetwork.h
mdrun.cpp
mdrunutility
/
handlerestart.h
mdrun.cpp
mdrun
/
legacymdrunoptions.h
mdrun.cpp
mdrunutility
/
logging.h
mdrun.cpp
mdrunutility
/
multisim.h
mdrun.cpp
domdec
/
options.h
mdrun.cpp
commandline
/
pargs.h
mdrun.cpp
utility
/
physicalnodecommunicator.h
mdrun.cpp
mdrun
/
runner.h
mdrun.cpp
mdrun
/
simulationcontext.h
mdrun_main.h
utility
/
gmxmpi.h
tests
/
mimic.cpp
utility
/
basenetwork.h
tests
/
mimic.cpp
utility
/
stringutil.h
tests
/
minimize.cpp
utility
/
basenetwork.h
tests
/
minimize.cpp
options
/
filenameoption.h
tests
/
minimize.cpp
utility
/
stringutil.h
tests
/
moduletest.cpp
utility
/
basenetwork.h
tests
/
moduletest.cpp
options
/
basicoptions.h
tests
/
moduletest.cpp
utility
/
gmxmpi.h
tests
/
moduletest.cpp
options
/
ioptionscontainer.h
tests
/
moduletest.cpp
utility
/
physicalnodecommunicator.h
tests
/
moduletest.cpp
utility
/
textwriter.h
tests
/
moduletest.h
utility
/
classhelpers.h
tests
/
moduletest.h
utility
/
gmxmpi.h
tests
/
multiple_time_stepping.cpp
utility
/
stringutil.h
tests
/
multisim.cpp
mdtypes
/
md_enums.h
tests
/
multisimtest.cpp
utility
/
basenetwork.h
tests
/
multisimtest.cpp
mdtypes
/
md_enums.h
tests
/
multisimtest.cpp
utility
/
path.h
tests
/
multisimtest.cpp
utility
/
stringutil.h
nonbonded_bench.cpp
utility
/
arraysize.h
nonbonded_bench.cpp
options
/
basicoptions.h
nonbonded_bench.cpp
nbnxm
/
benchmark
/
bench_setup.h
nonbonded_bench.cpp
commandline
/
cmdlineoptionsmodule.h
nonbonded_bench.cpp
utility
/
enumerationhelpers.h
nonbonded_bench.cpp
ewald
/
ewald_utils.h
nonbonded_bench.cpp
options
/
filenameoption.h
nonbonded_bench.cpp
options
/
ioptionscontainer.h
nonbonded_bench.cpp
selection
/
selectionoptionbehavior.h
tests
/
nonbonded_bench.cpp
utility
/
stringutil.h
tests
/
nonbonded_bench.cpp
utility
/
textreader.h
nonbonded_bench.h
commandline
/
cmdlineoptionsmodule.h
tests
/
normalmodes.cpp
utility
/
basenetwork.h
tests
/
normalmodes.cpp
options
/
filenameoption.h
tests
/
normalmodes.cpp
utility
/
filestream.h
tests
/
normalmodes.cpp
utility
/
stringutil.h
tests
/
outputfiles.cpp
utility
/
path.h
tests
/
outputfiles.cpp
utility
/
stringutil.h
tests
/
periodicactions.cpp
utility
/
strconvert.h
tests
/
periodicactions.cpp
utility
/
stringutil.h
tests
/
pmetest.cpp
utility
/
cstringutil.h
tests
/
pmetest.cpp
hardware
/
device_management.h
tests
/
pmetest.cpp
utility
/
gmxmpi.h
tests
/
pmetest.cpp
utility
/
physicalnodecommunicator.h
tests
/
pmetest.cpp
ewald
/
pme.h
tests
/
pmetest.cpp
utility
/
stringutil.h
tests
/
pull.cpp
options
/
filenameoption.h
tests
/
pull.cpp
utility
/
stringutil.h
tests
/
replicaexchange.cpp
utility
/
basenetwork.h
tests
/
replicaexchange.cpp
utility
/
filestream.h
tests
/
replicaexchange.cpp
mdtypes
/
md_enums.h
tests
/
replicaexchange.cpp
utility
/
path.h
tests
/
replicaexchange.cpp
utility
/
stringutil.h
tests
/
rerun.cpp
utility
/
strconvert.h
tests
/
rerun.cpp
utility
/
stringutil.h
tests
/
simple_mdrun.cpp
utility
/
basenetwork.h
tests
/
simple_mdrun.cpp
options
/
filenameoption.h
tests
/
simple_mdrun.cpp
utility
/
filestream.h
tests
/
simple_mdrun.cpp
utility
/
strconvert.h
tests
/
simple_mdrun.cpp
utility
/
stringutil.h
tests
/
simulator.cpp
utility
/
stringutil.h
tests
/
tabulated_bonded_interactions.cpp
utility
/
stringutil.h
tests
/
tabulated_bonded_interactions.cpp
utility
/
textwriter.h
tests
/
termination.cpp
utility
/
path.h
tests
/
termination.cpp
utility
/
stringutil.h
tests
/
termination.cpp
utility
/
textreader.h
tests
/
terminationhelper.cpp
utility
/
path.h
tests
/
tpitest.cpp
utility
/
stringutil.h
tests
/
tpitest.cpp
utility
/
textreader.h
tests
/
trajectory_writing.cpp
options
/
filenameoption.h
tests
/
trajectory_writing.cpp
utility
/
stringutil.h
tests
/
trajectorycomparison.cpp
utility
/
strconvert.h
tests
/
trajectoryreader.h
utility
/
classhelpers.h
tests
/
trajectoryreader.h
utility
/
unique_cptr.h
tests
/
virtualsites.cpp
utility
/
strconvert.h
tests
/
virtualsites.cpp
utility
/
stringutil.h
tests
/
virtualsites.cpp
trajectoryanalysis
/
topologyinformation.h
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