- s -

• s : BondedInteraction , em_state , gmx_ana_selvalue_t
• s_defaultTrajectoryTolerances : gmx::test::TrajectoryComparison
• s_globalOutputTempDirectory : gmx::test::TestFileManager::Impl
• s_inputDirectory : gmx::test::TestFileManager::Impl
• s_nPoints : gmx::test::SimdBaseTest
• s_numReductionBlockBits : gmx::ThreadForceBuffer< ForceBufferElementType >
• s_reductionBlockSize : gmx::ThreadForceBuffer< ForceBufferElementType >
• s_simulationDatabaseDirectory : gmx::test::TestFileManager::Impl
• s_subscriberBufferMinimumSize : gmx::test::anonymous_namespace{observablesreducer.cpp}::Subscriber
• s_subscriberOffset : gmx::test::anonymous_namespace{observablesreducer.cpp}::Subscriber
• s_workMemSize_ : gmx::test::anonymous_namespace{simd_floatingpoint_util.cpp}::SimdFloatingpointUtilTest
• sbase : gmx_ana_poscalc_t
• sblock : gmx::shakedata
• sc : gmx_sel_lexer_t
• sc_ : gmx::SelectionCollection::Impl
• scalarForce : pull_coord_work_t
• scale : PmeGpuDynamicParams , t_forcetable
• scaled_lagrange_multiplier : gmx::shakedata
• sci : Nbnxm::gpu_plist , nbnxn_sci
• sci_nalloc : Nbnxm::gpu_plist
• searchCount_ : SearchCycleCounting
• sectionDepth_ : gmx::HelpWriterContext::Impl
• sectionStack_ : gmx::OptionsAssigner::Impl
• seed : gmx_repl_ex
• seed_ : gmx::test::BiasTest , gmx::test::BiasFepLambdaStateTest
• sel : gmx::analysismodules::anonymous_namespace{msd.cpp}::MsdGroupData , gmx_ana_selcollection_t
• selections_ : gmx::TrajectoryAnalysisModuleData::Impl
• sendAtom : gmx_domdec_specat_comm_t
• sendForcesDirectToPpGpu : gmx_pme_pp
• sendxbuf : gmx::ImdSession::Impl
• seqIndex_ : gmx::test::TestReferenceChecker::Impl
• sessionPossible : gmx::ImdSession::Impl
• set : gmx::SimulationSignal
• set_poscoll : gmx_ana_selmethod_t
• setNumPositionScalingVariables : gmx::PropagatorConnection
• setNumVelocityScalingVariables : gmx::PropagatorConnection
• settings : PmeGpu
• settings_ : gmx::internal::BasicHistogramImpl
• sh_ewald : NBParamGpu , cl_nbparam_params
• sh_lj_ewald : NBParamGpu , cl_nbparam_params
• shared : gmx::HardwareTopology::Cache
• sharedMemorySize : KernelLaunchConfig
• shift : nbnxn_ci_t , nbnxn_sci
• shift0 : DDPairInteractionRanges
• shift1 : DDPairInteractionRanges
• shift_vec : nbnxn_atomdata_t
• shiftVec : NBAtomDataGpu
• shiftVecUploaded : NBAtomDataGpu
• shortDescription : gmx::ConvertTprInfo , gmx::NonbondedBenchmarkInfo
• sig : gmx::SimulationSignal
• sigma : t_UmbrellaWindow , gmx::analysismodules::anonymous_namespace{msd.cpp}::MsdGroupData
• sigma3A : t_mdatoms
• sigma3B : t_mdatoms
• sigma_ : gmx::DensityFittingForce::Impl , gmx::GaussTransform3D::Impl , gmx::GaussianSpreadKernelParameters::Shape , gmx::anonymous_namespace{neldermead.cpp}::NelderMeadParameters
• sigmaA : t_mdatoms
• sigmaB : t_mdatoms
• signals_ : gmx::test::SignalTest
• signFactor_ : gmx::AtomsAdjacencyListElement
• sigSmoothIact : UmbrellaOptions
• simdInternal_ : gmx::Simd4Double , gmx::Simd4DBool , gmx::Simd4Float , gmx::Simd4FBool , gmx::SimdDouble , gmx::SimdDInt32 , gmx::SimdDBool , gmx::SimdDIBool , gmx::SimdFloat , gmx::SimdFInt32 , gmx::SimdFBool , gmx::SimdFIBool
• simdIntWidth : ScalarDataTypes , SimdDataTypes
• simdMasks : nbnxn_atomdata_t
• simdRealWidth : ScalarDataTypes , SimdDataTypes
• similarityMeasureMethod_ : gmx::DensityFittingParameters
• simulation_part : CheckpointHeaderContents
• simulationComm_ : gmx_multisim_t
• simulationCommunicator_ : gmx::SimulationContext
• simulationIndex_ : gmx_multisim_t
• simulationNumber_ : gmx::test::MultiSimTest
• simulationSetupNotifier_ : gmx::MDModulesNotifiers
• singleModule_ : gmx::CommandLineModuleManager::Impl
• size : gmx::HardwareTopology::Cache , gmx_sel_mempool_block_t
• size_ : gmx::PhysicalNodeCommunicator , gmx::test::MultiSimTest
• sizeOfTprBody : TpxFileHeader
• sizeRequired : gmx::ObservablesReducerBuilder::Impl::Subscription
• sizeRequired_ : gmx::test::anonymous_namespace{observablesreducer.cpp}::Subscriber
• skewData_ : gmx::MrcDensityMapHeader
• slab_buffer : gmx_enfrotgrp
• slab_center : gmx_enfrotgrp
• slab_center_ref : gmx_enfrotgrp
• slab_data : gmx_enfrotgrp
• slab_first : gmx_enfrotgrp
• slab_first_ref : gmx_enfrotgrp
• slab_innersumvec : gmx_enfrotgrp
• slab_last : gmx_enfrotgrp
• slab_last_ref : gmx_enfrotgrp
• slab_torque_v : gmx_enfrotgrp
• slab_weights : gmx_enfrotgrp
• socket : gmx::ImdSession::Impl
• socketRankInMachine : gmx::CpuInfo::LogicalProcessor , gmx::HardwareTopology::LogicalProcessor
• sockets : gmx::HardwareTopology::Machine
• solveMaxWorkGroupSize : PmeGpuProgramImpl
• sortBuffer : Nbnxm::GridWork , PairsearchWork
• source_ : gmx::test::MockAnalysisDataModule::Impl
• spaceGroup_ : gmx::MrcDensityMapHeader
• spacing : gmx::NumericalSplineTableInput , pme_setup_t
• span : methoddata_insolidangle
• spas : gmx_domdec_specat_comm_t
• spatialData : pull_coord_work_t
• splineDataByPmeOrder : gmx::test::anonymous_namespace{pmegathertest.cpp}::AtomSizedData
• splineDataSize : PmeGpuSpecific
• splineDataSizeAlloc : PmeGpuSpecific
• splineDerivatives : gmx::test::anonymous_namespace{pmegathertest.cpp}::AtomAndPmeOrderSizedData
• splineValues : gmx::test::anonymous_namespace{pmegathertest.cpp}::AtomAndPmeOrderSizedData
• splineValuesCapacity : PmeGpuSpecific
• splineValuesOffset : PmeGpuGridParams
• splineValuesSize : PmeGpuSpecific
• spost_ : gmx::SelectionCollection::Impl
• spreadRange_ : gmx::GaussTransform3D::Impl
• spreadTask : gmx::InterdependentTask
• spreadWidthMultiplesOfSigma_ : gmx::GaussianSpreadKernelParameters::Shape
• spreadWorkGroupSize : PmeGpuProgramImpl
• sqrt_c6A : t_mdatoms
• sqrt_c6B : t_mdatoms
• staging : PmeGpu
• start_time_stamp : gmx_walltime_accounting
• startIndex : gmx::SelectionLocation
• startingBehavior : gmx::LegacySimulatorData , gmx::anonymous_namespace{handlerestart.cpp}::StartingBehaviorHandler
• startingBehavior_ : gmx::SimulatorConfig
• startTimeValue : gmx::OutputRequirements
• state : gmx::LegacySimulatorData
• state_ : gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest , gmx::AnalysisDataModuleManager::Impl , gmx::HelpWriterContext::Impl
• state_global : gmx::LegacySimulatorData
• stateChanged : gmx::StepWorkload
• status : DeviceInformation
• status_ : gmx::ObservablesReducer::Impl
• statusWriter : gmx_sel_lexer_t
• step : gmx_pme_comm_n_box_t , CheckpointHeaderContents , gmx::test::anonymous_namespace{freeenergyparameters.cpp}::FreeEnergyParameterTestParameters
• stepchange : UmbrellaOptions
• stepFactor : gmx::MtsLevel
• stepsSinceLastCalculation_ : gmx::DensityFittingForceProviderState
• stepsSinceLastCalculationName_ : gmx::DensityFittingForceProviderState
• stepUpdateContrib : UmbrellaOptions
• stop_cond : gmx_pme_comm_vir_ene_t
• stopHandlerBuilder : gmx::LegacySimulatorData
• storage_ : gmx::AnalysisData::Impl , gmx::SelectionOptionManager::Impl::SelectionRequest , gmx::internal::OptionSectionImpl , gmx::internal::BasicHistogramImpl
• storageInitialized_ : gmx::internal::OptionSectionImpl
• storageLimit_ : gmx::internal::AnalysisDataStorageImpl
• stpsz : anonymous_namespace{edsam.cpp}::t_eigvec
• str : gmx::SelectionParserValue
• stream_ : gmx::TextReader::Impl
• streams_ : gmx::DeviceStreamManager::Impl
• stride : t_forcetable , methoddata_merge
• strides : gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}::PlanSetupData
• subgroups_ : gmx::internal::OptionSectionImpl::Group
• subscriberIndex_ : gmx::test::anonymous_namespace{observablesreducer.cpp}::Subscriber
• subscribers : gmx::test::anonymous_namespace{observablesreducer.cpp}::ObservablesReducerIntegrationTest::RankData
• subscriptions_ : gmx::ObservablesReducerBuilder::Impl
• subsections_ : gmx::internal::OptionSectionImpl
• subTopicMap_ : gmx::AbstractCompositeHelpTopic::Impl
• subTopics_ : gmx::AbstractCompositeHelpTopic::Impl
• sum_dg : df_history_t
• sum_minvar : df_history_t
• sum_variance : df_history_t
• sum_weights : df_history_t
• sumOverBlocksBlockWeightBlockWeightX : gmx::CorrelationBlockData::CoordData
• sumSquaredDeviation : gmx::LincsDeviations
• surfaceDist2_ : gmx::analysismodules::anonymous_namespace{rdf.cpp}::RdfModuleData
• svir_prev : t_state
• swap : gmx::LegacySimulatorData
• swapdim : t_swap
• swapHistory : ObservablesHistory
• symbols_ : gmx::SelectionParserSymbolTable::Impl
• symtab : gmx_ana_selcollection_t
• syncSpreadGridD2H : PmeGpuSpecific
• syntax : gmx_ana_selmethod_help_t
• systemInfo_ : gmx::DomainDecompositionBuilder::Impl