Gromacs  5.1.2
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  A  
CommandLineModuleManagerTestBase (gmx::test)   gmx_sel_lexer_t   MdrunTestFixture (gmx::test)   SelectionTreeElement (gmx)   
CommandLineModuleSettings (gmx)   gmx_sel_mempool_block_t   MdrunTestFixtureBase (gmx::test)   SelelemTemporaryValueAssigner (anonymous_namespace{evaluate.cpp})   
AbstractAnalysisArrayData (gmx)   CommandLineOptionsModuleInterface (gmx)   gmx_sel_mempool_t   MempoolGroupReserver (anonymous_namespace{evaluate.cpp})   ShakeTest (anonymous_namespace{shake.cpp})   
AbstractAnalysisData (gmx)   CommandLineParser (gmx)   gmx_signalling_t   MempoolSelelemReserver (anonymous_namespace{evaluate.cpp})   HelpWriterContext::Impl::SharedState (gmx)   
AbstractAverageHistogram (gmx)   CommandLineProgramContext (gmx)   gmx_simd_dbool_t   MessageStringCollector (gmx)   Simd4Test (gmx::test)   
AbstractCompositeHelpTopic (gmx)   CommandLineTestBase (gmx::test)   gmx_simd_dibool_t   MessageStringContext (gmx)   SimdBaseTest (gmx::test)   
AbstractOption (gmx)   CommandLineTestHelper (gmx::test)   gmx_simd_dint32_t   MessageWriterFileNoThrow (gmx::anonymous_namespace{exceptions.cpp})   SimdTest (gmx::test)   
AbstractOptionStorage (gmx)   CommandsHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   gmx_simd_double_t   MessageWriterInterface (gmx::anonymous_namespace{exceptions.cpp})   SimpleHelpTopic (gmx)   
AbstractPlotModule (gmx)   CompositeHelpTopic (gmx)   gmx_simd_fbool_t   MessageWriterString (gmx::anonymous_namespace{exceptions.cpp})   SimulationInstabilityError (gmx)   
AbstractSimpleHelpTopic (gmx)   CompressedXOutputTest (anonymous_namespace{compressed_x_output.cpp})   gmx_simd_fibool_t   MindistAction (gmx::anonymous_namespace{nbsearch.cpp})   SimulationRunner (gmx::test)   
AbstractTrajectoryAnalysisModuleTestFixture (gmx::test)   ConstArrayRef (gmx)   gmx_simd_fint32_t   MockAverageHistogram (anonymous_namespace{histogram.cpp})   StaticAverageHistogram (gmx::anonymous_namespace{histogram.cpp})   
AnalysisArrayData (gmx)   cu_atomdata   gmx_simd_float_t   MockModule (gmx::test)   StaticDataFrameHeaderChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp})   
AnalysisData (gmx)   cu_nbparam   gmx_sparsematrix   MockOption (anonymous_namespace{abstractoptionstorage.cpp})   StaticDataPointsChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp})   
AnalysisDataAverageModule (gmx)   cu_plist   gmx_unique_ptr (gmx)   MockOptionsModule (gmx::test)   StaticDataPointsStorageChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp})   
AnalysisDataBinAverageModule (gmx)   cu_timers   gmx_wallclock_gpu_t   MockOptionStorage (anonymous_namespace{abstractoptionstorage.cpp})   StringFormatter (gmx)   
AnalysisDataDisplacementModule (gmx)   
  D  
gmx_walltime_accounting   ModuleHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   StringKeywordMatchItem (anonymous_namespace{sm_keywords.cpp})   
AnalysisDataFrameAverageModule (gmx)   GromacsException (gmx)   AnalysisDataModuleManager::Impl::ModuleInfo (gmx)   StringOption (gmx)   
AnalysisDataFrameAverager (gmx)   DataFileFinder (gmx)   GromppTest (anonymous_namespace{grompp.cpp})   
  N  
StringOptionInfo (gmx)   
AnalysisDataFrameHeader (gmx)   DataFileInfo (gmx)   
  H  
StringOptionStorage (gmx)   
AnalysisDataFrameLocalData (gmx)   DataFileOptions (gmx)   nb_staging   StringTestBase (gmx::test)   
AnalysisDataFrameLocalDataHandle (gmx)   DataStorageRequester (gmx::test::anonymous_namespace{mock_datamodule.cpp})   HelpExportCompletion (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   NotImplementedError (gmx)   SurfaceAreaCalculator (gmx)   
AnalysisDataFrameLocalDataSetHandle (gmx)   DefaultExecutableEnvironment (gmx::anonymous_namespace{cmdlineprogramcontext.cpp})   HelpExportInterface (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   
  O  
swap_compartment   
AnalysisDataFrameRef (gmx)   DefaultInputRedirector (gmx::anonymous_namespace{fileredirector.cpp})   HelpExportReStructuredText (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   swap_group   
AnalysisDataHandle (gmx)   DefaultOutputRedirector (gmx::anonymous_namespace{fileredirector.cpp})   HelpLinks (gmx)   ObsoleteToolModule (anonymous_namespace{legacymodules.cpp})   SynopsisFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp})   
AnalysisDataHandleImpl (gmx::internal)   DefaultProgramContext (gmx::anonymous_namespace{programcontext.cpp})   HelpManager (gmx)   ocl_gpu_id_t   
  T  
AnalysisDataLifetimeModule (gmx)   DirectoryEnumerator (gmx)   HelpTopicInterface (gmx)   omp_module_nthreads_t   
AnalysisDataModuleInterface (gmx)   DomainDecompositionSpecialCasesTest (anonymous_namespace{domain_decomposition.cpp})   HelpWriterContext (gmx)   OptionInfo (gmx)   t_compare_value   
AnalysisDataModuleManager (gmx)   DoubleOption (gmx)   
  I  
OptionManagerContainer (gmx)   t_compiler_data   
AnalysisDataModuleParallel (gmx)   DoubleOptionInfo (gmx)   OptionManagerInterface (gmx)   t_conect (gmx::analysismodules::anonymous_namespace{sasa.cpp})   
AnalysisDataModuleSerial (gmx)   DoubleOptionStorage (gmx)   IdentityFormatter (gmx)   Options (gmx)   t_groupselection   
AnalysisDataParallelOptions (gmx)   
  E  
ilist_data_t   OptionsAdapter (gmx::anonymous_namespace{pargs.cpp})   t_methoddata_compare   
AnalysisDataPlotModule (gmx)   IMDEnergyBlock   OptionsAssigner (gmx)   t_methoddata_distance   
AnalysisDataPlotSettings (gmx)   eligible_gpu_ids   IMDHeader   OptionsFilter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp})   t_methoddata_insolidangle   
AnalysisDataPointSetRef (gmx)   EmptyArrayRef (gmx)   IMDSocket   OptionsFormatterInterface (gmx::anonymous_namespace{cmdlinehelpwriter.cpp})   t_methoddata_kweval   
AnalysisDataProxy (gmx)   ErrorMessage (gmx::anonymous_namespace{exceptions.cpp})   TrajectoryAnalysisSettings::Impl (gmx)   OptionsIterator (gmx)   t_methoddata_kwint   
AnalysisDataSimpleHistogramModule (gmx)   ExceptionInitializer (gmx)   TrajectoryAnalysisModuleData::Impl (gmx)   OptionsListFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp})   t_methoddata_kwreal   
AnalysisDataStorage (gmx)   ExecutableEnvironmentInterface (gmx)   TrajectoryAnalysisModule::Impl (gmx)   OptionsModifyingIterator (gmx)   t_methoddata_kwstr (anonymous_namespace{sm_keywords.cpp})   
AnalysisDataStorageFrame (gmx)   
  F  
TextTableFormatter::Impl (gmx)   OptionsModifyingTypeVisitor (gmx)   t_methoddata_merge   
AnalysisDataStorageFrameData (gmx::internal)   TestReferenceData::Impl (gmx::test)   OptionsModifyingVisitor (gmx)   t_methoddata_permute   
AnalysisDataStorageImpl (gmx::internal)   File (gmx)   TestReferenceChecker::Impl (gmx::test)   OptionStorageTemplate (gmx)   t_methoddata_pos   
AnalysisDataTestFixture (gmx::test)   FileInitializer (gmx)   TestFileManager::Impl (gmx::test)   OptionsTypeVisitor (gmx)   t_methoddata_same   
AnalysisDataTestInput (gmx::test)   FileInputRedirectorInterface (gmx)   MockAnalysisDataModule::Impl (gmx::test)   OptionsVisitor (gmx)   t_pargs   
AnalysisDataTestInputFrame (gmx::test)   FileIOError (gmx)   SelectionParserSymbolTable::Impl (gmx)   OptionTemplate (gmx)   t_partition   
AnalysisDataTestInputPointSet (gmx::test)   FileNameOption (gmx)   SelectionParserSymbolIterator::Impl (gmx)   
  P  
t_partition_item   
AnalysisDataValue (gmx)   FileNameOptionInfo (gmx)   SelectionParserSymbol::Impl (gmx)   t_register_method   
AnalysisDataVectorPlotModule (gmx)   FileNameOptionManager (gmx)   SelectionOptionManager::Impl (gmx)   PairDistance (gmx::analysismodules::anonymous_namespace{pairdist.cpp})   t_spheresurfacebin   
AnalysisDataWeightedHistogramModule (gmx)   FileNameOptionStorage (gmx)   SelectionCollection::Impl (gmx)   PairDistanceModuleData (gmx::analysismodules::anonymous_namespace{pairdist.cpp})   t_swap   
AnalysisHistogramSettings (gmx)   FileOutputRedirectorInterface (gmx)   PositionCalculationCollection::Impl (gmx)   ParameterizedMdrunTestFixture (gmx::test)   t_UmbrellaHeader   
AnalysisHistogramSettingsInitializer (gmx)   FileTypeHandler (gmx::anonymous_namespace{filenameoption.cpp})   OptionsAssigner::Impl (gmx)   pme_setup_t   t_UmbrellaOptions   
AnalysisNeighborhood (gmx)   FileTypeMapping (gmx::anonymous_namespace{filenameoption.cpp})   Options::Impl (gmx)   PositionCalculationCollection (gmx)   t_UmbrellaWindow   
AnalysisNeighborhoodPair (gmx)   FlagsTemplate (gmx)   HelpWriterContext::Impl (gmx)   PrivateImplPointer (gmx)   TestException (gmx::test)   
AnalysisNeighborhoodPairSearch (gmx)   FloatingPointDifference (gmx::test)   HelpManager::Impl (gmx)   ProgramContextInterface (gmx)   TestFileInputRedirector (gmx::test)   
AnalysisNeighborhoodPositions (gmx)   FloatingPointTolerance (gmx::test)   HelpLinks::Impl (gmx)   
  R  
TestFileManager (gmx::test)   
AnalysisNeighborhoodSearch (gmx)   FloatOption (gmx)   FileNameOptionManager::Impl (gmx)   TestFileOutputRedirector (gmx::test)   
AnalysisTemplate   FloatOptionInfo (gmx)   File::Impl (gmx)   Rdf (gmx::analysismodules::anonymous_namespace{rdf.cpp})   TestOptionsProvider (gmx::test)   
AnglePositionIterator (gmx::analysismodules::anonymous_namespace{angle.cpp})   FloatOptionStorage (gmx)   CommandLineParser::Impl (gmx)   RdfModuleData (gmx::analysismodules::anonymous_namespace{rdf.cpp})   TestOptionsRegistry (gmx::test::anonymous_namespace{testoptions.cpp})   
APIError (gmx)   FreeVolume (gmx::analysismodules::anonymous_namespace{freevolume.cpp})   CommandLineModuleManager::Impl (gmx)   Regex (gmx)   TestProgramContext (gmx::test::anonymous_namespace{testinit.cpp})   
ArrayRef (gmx)   
  G  
CommandLineHelpWriter::Impl (gmx)   SelectionOptionManager::Impl::RequestsClearer (gmx)   TestReferenceChecker (gmx::test)   
  B  
CommandLineHelpContext::Impl (gmx)   RootHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   TestReferenceData (gmx::test)   
GlobalCommandLineHelpContext (gmx)   AnalysisDataWeightedHistogramModule::Impl (gmx)   RstParagraphIterator (gmx)   TestReferenceDataEnvironment (anonymous_namespace{refdata.cpp})   
BasicAverageHistogramModule (gmx::internal)   gmx_ana_index_t   AnalysisDataSimpleHistogramModule::Impl (gmx)   TrajectoryAnalysisCommandLineRunner::Impl::RunnerCommandLineModule (gmx)   TextLineWrapper (gmx)   
BasicHistogramImpl (gmx::internal)   gmx_ana_indexgrps_t   AnalysisDataModuleManager::Impl (gmx)   
  S  
TextLineWrapperSettings (gmx)   
BasicVector (gmx)   gmx_ana_indexmap_t   AnalysisDataLifetimeModule::Impl (gmx)   TextTableFormatter (gmx)   
BinaryInformationSettings (gmx)   gmx_ana_pos_t   AnalysisDataDisplacementModule::Impl (gmx)   Sasa (gmx::analysismodules::anonymous_namespace{sasa.cpp})   thread_work_t   
BooleanOption (gmx)   gmx_ana_poscalc_t   AnalysisData::Impl (gmx)   SasaModuleData (gmx::analysismodules::anonymous_namespace{sasa.cpp})   TimeOptionScaler (gmx::anonymous_namespace{timeunitmanager.cpp})   
BooleanOptionInfo (gmx)   gmx_ana_selcollection_t   AbstractCompositeHelpTopic::Impl (gmx)   scoped_cptr (gmx)   TimeUnitManager (gmx)   
BooleanOptionStorage (gmx)   gmx_ana_selmethod_help_t   AbstractAnalysisData::Impl (gmx)   Selection (gmx)   TopologyInformation (gmx)   
  C  
gmx_ana_selmethod_t   InconsistentInputError (gmx)   SelectionCollection (gmx)   TrajectoryAnalysisCommandLineRunner (gmx)   
gmx_ana_selparam_t   IndexFileWriterModule (gmx::analysismodules::anonymous_namespace{select.cpp})   SelectionCompiler (gmx)   TrajectoryAnalysisModule (gmx)   
cl_atomdata   gmx_ana_selvalue_t   InstallationPrefixInfo (gmx)   SelectionData (gmx::internal)   TrajectoryAnalysisModuleData (gmx)   
cl_nb_staging   gmx_device_info_t   Int64Option (gmx)   SelectionEvaluator (gmx)   TrajectoryAnalysisModuleDataBasic (gmx::anonymous_namespace{analysismodule.cpp})   
cl_nbparam   gmx_domdec_constraints   Int64OptionInfo (gmx)   SelectionFileOption (gmx)   TrajectoryAnalysisModuleTestFixture (gmx::test)   
cl_nbparam_params   gmx_domdec_specat_comm   Int64OptionStorage (gmx)   SelectionFileOptionInfo (gmx)   TrajectoryAnalysisRunnerCommon (gmx)   
cl_plist   gmx_fft_fftpack   IntegerOption (gmx)   SelectionFileOptionStorage (gmx)   TrajectoryAnalysisSettings (gmx)   
cl_timers   gmx_fft_fftw3   IntegerOptionInfo (gmx)   SelectionLocation (gmx)   
  U  
CMainCommandLineModule (gmx::anonymous_namespace{cmdlinemodulemanager.cpp})   gmx_fft_mkl   IntegerOptionStorage (gmx)   SelectionOption (gmx)   
TextTableFormatter::Impl::ColumnData (gmx)   gmx_help_make_index_group   IntegrationTestFixture (gmx::test)   SelectionOptionInfo (gmx)   UserInputError (gmx)   
CommandLine (gmx::test)   gmx_IMD   InternalError (gmx)   SelectionOptionManager (gmx)   
  W  
CommandLineCommonOptionsHolder (gmx)   gmx_nbnxn_cuda_t   InvalidInputError (gmx)   SelectionOptionStorage (gmx)   
CommandLineHelpContext (gmx)   gmx_nbnxn_kernel_timing_data_t   
  K  
SelectionParserParameter (gmx)   WrapperInterface (gmx::anonymous_namespace{helpwritercontext.cpp})   
CommandLineHelpModule (gmx)   gmx_nbnxn_ocl_t   SelectionParserSymbol (gmx)   WrapperToString (gmx::anonymous_namespace{helpwritercontext.cpp})   
CommandLineHelpWriter (gmx)   gmx_pme_comm_n_box   KeywordDetailsHelpTopic (gmx::anonymous_namespace{selhelp.cpp})   SelectionParserSymbolIterator (gmx)   WrapperToVector (gmx::anonymous_namespace{helpwritercontext.cpp})   
CommandLineModuleGroup (gmx)   gmx_pme_comm_vir_ene_t   KeywordsHelpTopic (gmx::anonymous_namespace{selhelp.cpp})   SelectionParserSymbolTable (gmx)   
CommandLineModuleGroupData (gmx)   gmx_pme_pp   
  M  
SelectionParserValue (gmx)   
CommandLineModuleInterface (gmx)   gmx_reverse_top   SelectionPosition (gmx)   
CommandLineModuleManager (gmx)   gmx_sel_evaluate_t   MdrunRerun (anonymous_namespace{rerun.cpp})   SelectionOptionManager::Impl::SelectionRequest (gmx)   
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