Here is a list of all documented class members with links to the class documentation for each member:
- f -
- f
: gmx_pme_pp
, gmx_IMD
, cl_atomdata
, gmx_ana_pos_t
, cu_atomdata
, gmx::SelectionPosition
- f_elem_size
: cl_atomdata
- f_ind
: gmx_IMD
- FactoryMethod
: gmx::CommandLineOptionsModuleInterface
- File
: gmx::FileInitializer
, gmx::File
- file_
: gmx::HelpWriterContext::Impl::SharedState
- fileExists()
: gmx::FileInputRedirectorInterface
, gmx::test::TestFileInputRedirector
, gmx::anonymous_namespace{fileredirector.cpp}::DefaultInputRedirector
- FileInitializer()
: gmx::FileInitializer
- FileIOError()
: gmx::FileIOError
- fileManager()
: gmx::test::CommandLineTestBase
- fileManager_
: gmx::test::IntegrationTestFixture
- FileNameList
: gmx::test::TestFileManager::Impl
- FileNameOption()
: gmx::FileNameOption
- FileNameOptionInfo()
: gmx::FileNameOptionInfo
- FileNameOptionStorage
: gmx::FileNameOption
, gmx::FileNameOptionStorage
- filenmToOptions()
: gmx::anonymous_namespace{pargs.cpp}::OptionsAdapter
- files_
: gmx::test::TestFileManager::Impl
- fileType
: gmx::anonymous_namespace{filenameoption.cpp}::FileTypeMapping
- filetype()
: gmx::FileNameOption
- FileTypeHandler()
: gmx::anonymous_namespace{filenameoption.cpp}::FileTypeHandler
- fileTypes()
: gmx::FileNameOptionInfo
, gmx::FileNameOptionStorage
- fillNameIfMissing()
: gmx::SelectionTreeElement
- FilterType
: gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::OptionsFilter
- findBin()
: gmx::AnalysisHistogramSettings
- findFile()
: gmx::DataFileFinder
- findModuleByName()
: gmx::CommandLineModuleManager::Impl
- findNextLine()
: gmx::TextLineWrapper
- findNextPair()
: gmx::AnalysisNeighborhoodPairSearch
- findNode()
: gmx::test::TestReferenceChecker::Impl
- findOption()
: gmx::Options::Impl
, gmx::OptionsAssigner::Impl
- findOrCreateNode()
: gmx::test::TestReferenceChecker::Impl
- findSubSection()
: gmx::Options::Impl
- findSubTopic()
: gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::CommandsHelpTopic
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::ModuleHelpTopic
, gmx::AbstractSimpleHelpTopic
, gmx::AbstractCompositeHelpTopic
, gmx::HelpTopicInterface
- findSymbol()
: gmx::SelectionParserSymbolTable
- finish()
: gmx::AnalysisDataFrameAverager
, gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::SynopsisFormatter
, gmx::AbstractOptionStorage
, gmx::Options
, gmx::OptionsAssigner
, gmx::anonymous_namespace{analysismodule.cpp}::TrajectoryAnalysisModuleDataBasic
, gmx::TrajectoryAnalysisModuleData
, gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData
, gmx::analysismodules::anonymous_namespace{rdf.cpp}::RdfModuleData
, gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData
- finishAnalysis()
: gmx::TrajectoryAnalysisModule
, gmx::analysismodules::anonymous_namespace{freevolume.cpp}::FreeVolume
, gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistance
, gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf
, gmx::analysismodules::anonymous_namespace{sasa.cpp}::Sasa
, AnalysisTemplate
- finishContext()
: gmx::MessageStringCollector
- finishData()
: gmx::AnalysisData
, gmx::AnalysisDataHandle
- finishDataHandles()
: gmx::TrajectoryAnalysisModuleData
- finishDataStorage()
: gmx::AnalysisDataStorage
- finishFrame()
: gmx::AnalysisDataHandle
, gmx::internal::AnalysisDataStorageImpl
, gmx::internal::AnalysisDataStorageFrameData
, gmx::AnalysisDataStorageFrame
, gmx::AnalysisDataStorage
- finishFrames()
: gmx::TrajectoryAnalysisModule
- finishFrameSerial()
: gmx::AnalysisData
, gmx::internal::AnalysisDataStorageImpl
, gmx::AnalysisDataStorage
, gmx::TrajectoryAnalysisModule
- finishModuleExport()
: gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportInterface
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportReStructuredText
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportCompletion
- finishModuleGroupExport()
: gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportInterface
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportReStructuredText
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportCompletion
- finishOption()
: gmx::OptionsAssigner
- finishOptions()
: gmx::CommandLineCommonOptionsHolder
- finishPointSet()
: gmx::AnalysisDataHandle
, gmx::AnalysisDataStorageFrame
- finishReferenceFrame()
: gmx::test::MockAnalysisDataModule::Impl
- finishReferenceFrameSerial()
: gmx::test::MockAnalysisDataModule::Impl
- finishSection()
: gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::OptionsListFormatter
- finishSet()
: gmx::AbstractOptionStorage
- finishSubSection()
: gmx::OptionsAssigner
- first_
: gmx::PositionCalculationCollection::Impl
- firstColumn()
: gmx::AnalysisDataPointSetRef
, gmx::test::AnalysisDataTestInputPointSet
- firstColumnIndent_
: gmx::TextTableFormatter::Impl
- firstEdge()
: gmx::AnalysisHistogramSettings
- firstFrameLocation_
: gmx::internal::AnalysisDataStorageImpl
- firstLine()
: gmx::TextTableFormatter::Impl::ColumnData
- firstLine_
: gmx::TextTableFormatter::Impl::ColumnData
- firstLineIndent()
: gmx::RstParagraphIterator
, gmx::TextLineWrapperSettings
- firstStoredIndex()
: gmx::internal::AnalysisDataStorageImpl
- firstUnnotifiedIndex()
: gmx::internal::AnalysisDataStorageImpl
- firstUnnotifiedIndex_
: gmx::internal::AnalysisDataStorageImpl
- firstx_
: gmx::AnalysisDataLifetimeModule::Impl
- Flag
: gmx::AnalysisDataModuleInterface
- flags()
: gmx::AnalysisDataAverageModule
, gmx::AnalysisDataFrameAverageModule
, gmx::AnalysisDataDisplacementModule
, gmx::internal::BasicAverageHistogramModule
, gmx::AnalysisDataSimpleHistogramModule
, gmx::AnalysisDataWeightedHistogramModule
, gmx::AnalysisDataBinAverageModule
, gmx::AnalysisDataLifetimeModule
, gmx::AbstractPlotModule
, gmx::TrajectoryAnalysisSettings
, gmx::analysismodules::anonymous_namespace{select.cpp}::IndexFileWriterModule
, gmx_pme_comm_n_box
, t_compiler_data
, gmx_ana_poscalc_t
, gmx::SelectionTreeElement
, gmx_ana_selmethod_t
, gmx_ana_selparam_t
, t_compare_value
, t_methoddata_pos
, gmx::TrajectoryAnalysisSettings::Impl
, gmx::AnalysisDataModuleInterface
, gmx::AnalysisDataModuleSerial
, gmx::AnalysisDataModuleParallel
, gmx::AnalysisDataProxy
- flags_
: gmx::test::MockAnalysisDataModule::Impl
- flags_charge
: gmx_pme_pp
- FlagsTemplate()
: gmx::FlagsTemplate< FlagType >
- FloatingPointDifference()
: gmx::test::FloatingPointDifference
- FloatingPointTolerance()
: gmx::test::FloatingPointTolerance
- FloatOption()
: gmx::FloatOption
- FloatOptionInfo()
: gmx::FloatOptionInfo
- FloatOptionStorage
: gmx::FloatOption
, gmx::FloatOptionStorage
- fluxfromAtoB
: t_swap
- fluxleak
: t_swap
- fnPullx
: t_UmbrellaOptions
- foldLastColumnToNextLineIndent_
: gmx::TextTableFormatter::Impl
- forceAv
: t_UmbrellaWindow
- forces()
: gmx::Selection
- forcesendbuf
: gmx_IMD
- format_
: gmx::HelpLinks::Impl
, gmx::HelpWriterContext::Impl::SharedState
- formatBugs()
: gmx::CommandLineHelpWriter::Impl
- formatDefaultValueIfSet()
: gmx::OptionInfo
, gmx::AbstractOptionStorage
- formatDescription()
: gmx::OptionInfo
- formatExtraDescription()
: gmx::AbstractOptionStorage
, gmx::StringOptionStorage
, gmx::FileNameOptionStorage
- formatLine()
: gmx::TextLineWrapper
- formatOption()
: gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::SynopsisFormatter
, gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::OptionsListFormatter
, gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::OptionsFormatterInterface
- formatRow()
: gmx::TextTableFormatter
- formatSelected()
: gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::OptionsFilter
- formatSingleValue()
: gmx::BooleanOptionStorage
, gmx::IntegerOptionStorage
, gmx::Int64OptionStorage
, gmx::FloatOptionStorage
, gmx::StringOptionStorage
, gmx::FileNameOptionStorage
, gmx::OptionStorageTemplate< T >
, anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage
, gmx::SelectionOptionStorage
, gmx::DoubleOptionStorage
- formatValue()
: gmx::OptionInfo
, gmx::OptionStorageTemplate< T >
, gmx::SelectionFileOptionStorage
, gmx::AbstractOptionStorage
- fp_
: gmx::File::Impl
- fpout
: t_swap
- fr
: gmx_sel_evaluate_t
- frame()
: gmx::test::AnalysisDataTestInput
, gmx::TrajectoryAnalysisRunnerCommon
- FrameBuilderList
: gmx::internal::AnalysisDataStorageImpl
- frameChecker_
: gmx::test::MockAnalysisDataModule::Impl
- frameCount()
: gmx::AnalysisDataWeightedHistogramModule
, gmx::AbstractAnalysisArrayData
, gmx::AnalysisDataFrameAverageModule
, gmx::AnalysisDataStorage
, gmx::AnalysisData
, gmx::AnalysisDataFrameLocalData< ValueType >
, gmx::AbstractAnalysisData
, gmx::AnalysisDataProxy
, gmx::AnalysisDataSimpleHistogramModule
, gmx::test::AnalysisDataTestInput
- frameCount_
: gmx::AnalysisDataLifetimeModule::Impl
- frameData()
: gmx::AnalysisDataFrameLocalData< ValueType >
- frameDataSet()
: gmx::AnalysisDataFrameLocalData< ValueType >
- frameFinished()
: gmx::AnalysisDataFrameAverageModule
, gmx::AnalysisDataWeightedHistogramModule
, gmx::AnalysisDataModuleInterface
, gmx::internal::BasicAverageHistogramModule
, gmx::AnalysisDataModuleSerial
, gmx::AnalysisDataModuleParallel
, gmx::AnalysisDataProxy
, gmx::AnalysisDataAverageModule
, gmx::AnalysisDataDisplacementModule
, gmx::AnalysisDataBinAverageModule
, gmx::AbstractPlotModule
, gmx::AnalysisDataLifetimeModule
, gmx::AnalysisDataSimpleHistogramModule
, gmx::analysismodules::anonymous_namespace{select.cpp}::IndexFileWriterModule
- frameFinishedSerial()
: gmx::AnalysisDataModuleInterface
, gmx::AnalysisDataSimpleHistogramModule
, gmx::AnalysisDataWeightedHistogramModule
, gmx::AnalysisDataProxy
, gmx::AnalysisDataModuleParallel
- FrameHandle
: gmx::AnalysisDataFrameLocalData< ValueType >
- frameIndex()
: gmx::AnalysisDataPointSetRef
, gmx::internal::AnalysisDataStorageFrameData
, gmx::AnalysisDataFrameRef
- frameIndex_
: gmx::test::MockAnalysisDataModule::Impl
- FrameList
: gmx::internal::AnalysisDataStorageImpl
- FrameLocalData
: gmx::AnalysisDataSimpleHistogramModule::Impl
, gmx::AnalysisDataWeightedHistogramModule::Impl
- FramePointer
: gmx::internal::AnalysisDataStorageImpl
- frameReference()
: gmx::internal::AnalysisDataStorageFrameData
- frames_
: gmx::internal::AnalysisDataStorageImpl
- frameStarted()
: gmx::AnalysisDataModuleParallel
, gmx::AnalysisDataLifetimeModule
, gmx::AnalysisDataModuleInterface
, gmx::AnalysisDataSimpleHistogramModule
, gmx::AnalysisDataBinAverageModule
, gmx::internal::BasicAverageHistogramModule
, gmx::AnalysisDataDisplacementModule
, gmx::AbstractPlotModule
, gmx::AnalysisDataFrameAverageModule
, gmx::AnalysisDataProxy
, gmx::analysismodules::anonymous_namespace{select.cpp}::IndexFileWriterModule
, gmx::AnalysisDataAverageModule
, gmx::AnalysisDataModuleSerial
, gmx::AnalysisDataWeightedHistogramModule
- free
: gmx_ana_selmethod_t
- freeCompilerData()
: gmx::SelectionTreeElement
- freeExpressionData()
: gmx::SelectionTreeElement
- freeptr
: gmx_sel_mempool_t
- freesize
: gmx_sel_mempool_t
- freeValues()
: gmx::SelectionTreeElement
- FreeVolume()
: gmx::analysismodules::anonymous_namespace{freevolume.cpp}::FreeVolume
- frflags
: gmx::TrajectoryAnalysisSettings::Impl
, gmx::TrajectoryAnalysisSettings
- fromArray()
: gmx::ArrayRef< T >
, gmx::ConstArrayRef< T >
- fromPointers()
: gmx::ArrayRef< T >
, gmx::ConstArrayRef< T >
- fromVector()
: gmx::ConstArrayRef< T >
, gmx::ArrayRef< T >
- front()
: gmx::ArrayRef< T >
, gmx::ConstArrayRef< T >
, gmx::ArrayRef< T >
- fshift
: cl_atomdata
, cl_nb_staging
, nb_staging
, cu_atomdata
- fshift_elem_size
: cl_atomdata
- ftype
: ilist_data_t
- fullBinaryPath()
: gmx::ProgramContextInterface
, gmx::anonymous_namespace{programcontext.cpp}::DefaultProgramContext
, gmx::CommandLineProgramContext
, gmx::test::anonymous_namespace{testinit.cpp}::TestProgramContext
- fullFilename_
: gmx::test::TestReferenceData::Impl