Here is a list of all documented class members with links to the class documentation for each member:
- i -
- i
: t_pargs
, gmx::SelectionParserValue
, t_compare_value
, gmx_simd_fint32_t
, gmx_ana_selvalue_t
, gmx_simd_dint32_t
- i1
: gmx::SelectionParserValue
- i2
: gmx::SelectionParserValue
- ibuf
: gmx_domdec_specat_comm
- ibuf_nalloc
: gmx_domdec_specat_comm
- id
: gmx::SelectionTreeElement
- idef
: thread_work_t
- ids
: eligible_gpu_ids
- ifac
: gmx_fft_fftpack
- il
: ilist_data_t
- Impl
: gmx::CommandLineModuleGroup
, gmx::SelectionCollection::Impl
, gmx::SelectionOptionManager::Impl
, gmx::AnalysisDataSimpleHistogramModule::Impl
, gmx::SelectionParserSymbol::Impl
, gmx::SelectionParserSymbolIterator::Impl
, gmx::AnalysisDataWeightedHistogramModule::Impl
, gmx::SelectionParserSymbolIterator::Impl
, gmx::TrajectoryAnalysisModule::Impl
, gmx::AnalysisDataLifetimeModule::Impl
, gmx::TrajectoryAnalysisModuleData::Impl
, gmx::TrajectoryAnalysisSettings::Impl
, gmx::test::MockAnalysisDataModule::Impl
, gmx::File::Impl
, gmx::test::TestReferenceData::Impl
, gmx::CommandLineHelpContext::Impl
, gmx::test::TestReferenceChecker::Impl
, gmx::CommandLineHelpContext::Impl
, gmx::test::TestFileManager::Impl
, gmx::CommandLineHelpWriter::Impl
, gmx::CommandLineModuleManager::Impl
, gmx::CommandLineParser::Impl
, gmx::TextTableFormatter::Impl
, gmx::HelpManager::Impl
, gmx::HelpLinks::Impl
, gmx::HelpWriterContext::Impl
, gmx::Options::Impl
, gmx::OptionsAssigner::Impl
- ImplPointer
: gmx::AnalysisNeighborhoodSearch
, gmx::AnalysisNeighborhoodPairSearch
- includeAll()
: gmx::AnalysisHistogramSettingsInitializer
, gmx::AnalysisHistogramSettings
- includeCurrentDir()
: gmx::DataFileOptions
- includeDataset()
: gmx::test::AbstractTrajectoryAnalysisModuleTestFixture
- IncludeSelectionTypeOption
: gmx::SelectionCollection
- InconsistentInputError()
: gmx::InconsistentInputError
- ind
: gmx_IMD
, swap_compartment
, swap_group
- ind_loc
: gmx_IMD
, swap_group
- indent()
: gmx::RstParagraphIterator
, gmx::TextLineWrapperSettings
- index
: gmx_ana_index_t
, gmx::AnalysisDataFrameHeader
, gmx::test::AnalysisDataTestInputPointSet
, gmx::test::AnalysisDataTestInputFrame
- index_
: gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData
- indexed()
: gmx::AnalysisNeighborhoodPositions
- inflow_netto
: swap_compartment
- InfoType
: gmx::BooleanOption
, gmx::IntegerOption
, gmx::Int64Option
, gmx::DoubleOption
, gmx::FloatOption
, gmx::StringOption
, gmx::FileNameOption
, anonymous_namespace{abstractoptionstorage.cpp}::MockOption
, gmx::SelectionFileOption
, gmx::SelectionOption
- init
: gmx_ana_selmethod_t
, gmx::AnalysisDataFrameLocalData< ValueType >
, gmx::internal::BasicHistogramImpl
, gmx::AbstractAverageHistogram
, gmx::AnalysisDataSimpleHistogramModule
, gmx::AnalysisDataWeightedHistogramModule
, gmx::AnalysisDataBinAverageModule
, gmx::CommandLineHelpModule
, gmx::CommandLineModuleInterface
, gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule
, gmx::CommandLineOptionsModuleInterface
, gmx::TrajectoryAnalysisCommandLineRunner::Impl::RunnerCommandLineModule
, anonymous_namespace{legacymodules.cpp}::ObsoleteToolModule
- init_data
: gmx_ana_selmethod_t
- init_dist
: t_UmbrellaHeader
- init_frame
: gmx_ana_selmethod_t
- initAfterFirstFrame()
: gmx::TrajectoryAnalysisModule
, gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf
- initAnalysis()
: gmx::TrajectoryAnalysisModule
, gmx::analysismodules::anonymous_namespace{freevolume.cpp}::FreeVolume
, gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistance
, gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf
, gmx::analysismodules::anonymous_namespace{sasa.cpp}::Sasa
, AnalysisTemplate
- initCoveredFraction()
: gmx::internal::SelectionData
, gmx::Selection
- initEvaluation()
: gmx::PositionCalculationCollection
- initFirstFrame()
: gmx::TrajectoryAnalysisRunnerCommon
- initFrame()
: gmx::PositionCalculationCollection
, gmx::TrajectoryAnalysisRunnerCommon
- initFromArray()
: gmx::test::CommandLine
- initialized
: omp_module_nthreads_t
- initializeMassesAndCharges()
: gmx::internal::SelectionData
- initIndexGroups()
: gmx::TrajectoryAnalysisRunnerCommon
- initManager()
: gmx::test::CommandLineModuleManagerTestBase
- initOptions()
: gmx::test::TestOptionsProvider
, gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf
, gmx::CommandLineCommonOptionsHolder
, gmx::CommandLineOptionsModuleInterface
, gmx::SelectionCollection
, gmx::SelectionOptionManager
, gmx::TrajectoryAnalysisModule
, gmx::analysismodules::anonymous_namespace{freevolume.cpp}::FreeVolume
, gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistance
, gmx::analysismodules::anonymous_namespace{sasa.cpp}::Sasa
, gmx::TrajectoryAnalysisRunnerCommon
, gmx::test::anonymous_namespace{testoptions.cpp}::TestOptionsRegistry
, AnalysisTemplate
- initOriginalIdsToGroup()
: gmx::Selection
- initOutputRedirector()
: gmx::test::StringTestBase
- initRefCountArray()
: gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData
- initSearch()
: gmx::AnalysisNeighborhood
- initTopology()
: gmx::TrajectoryAnalysisRunnerCommon
- inplace
: gmx_fft_mkl
- inputFile()
: gmx::FileNameOption
- inputOutputFile()
: gmx::FileNameOption
- insertCalculation()
: gmx::PositionCalculationCollection::Impl
- installationPrefix()
: gmx::CommandLineProgramContext
, gmx::ProgramContextInterface
, gmx::test::anonymous_namespace{testinit.cpp}::TestProgramContext
, gmx::anonymous_namespace{programcontext.cpp}::DefaultProgramContext
- InstallationPrefixInfo()
: gmx::InstallationPrefixInfo
- inSubSection()
: gmx::OptionsAssigner::Impl
- Int64Option()
: gmx::Int64Option
- Int64OptionInfo()
: gmx::Int64OptionInfo
- Int64OptionStorage
: gmx::Int64Option
, gmx::Int64OptionStorage
- integerBins()
: gmx::AnalysisHistogramSettingsInitializer
- IntegerOption()
: gmx::IntegerOption
- IntegerOptionInfo()
: gmx::IntegerOptionInfo
- IntegerOptionStorage
: gmx::IntegerOption
, gmx::IntegerOptionStorage
- internal::AnalysisDataStorageFrameData
: gmx::AnalysisDataStorageFrame
- internal::AnalysisDataStorageImpl
: gmx::AnalysisDataStorageFrame
- internal::AnalysisNeighborhoodPairSearchImpl
: gmx::AnalysisNeighborhoodPositions
- internal::AnalysisNeighborhoodSearchImpl
: gmx::AnalysisNeighborhoodPositions
- InternalError()
: gmx::InternalError
- InvalidInputError()
: gmx::InvalidInputError
- inverseMassesDatabase_
: anonymous_namespace{shake.cpp}::ShakeTest
- inverseTimeScaleFactor()
: gmx::TimeUnitManager
- ireq
: gmx_domdec_specat_comm
- is
: t_pargs
- isAllocated()
: gmx::AbstractAnalysisArrayData
- isAtRootTopic()
: gmx::HelpManager::Impl
- isAvailable()
: gmx::internal::AnalysisDataStorageFrameData
- isBoolean()
: gmx::AbstractOptionStorage
- isCompletionExport()
: gmx::CommandLineHelpContext
- isContext()
: gmx::anonymous_namespace{exceptions.cpp}::ErrorMessage
- isCoveredFractionDynamic()
: gmx::Selection
, gmx::internal::SelectionData
- isDirectoryOption()
: gmx::FileNameOptionInfo
, gmx::FileNameOptionStorage
- isDouble()
: gmx::test::FloatingPointDifference
- isDynamic()
: gmx::internal::SelectionData
, gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator
, gmx::Selection
- isEmpty()
: gmx::MessageStringCollector
- isEnumerated()
: gmx::StringOptionInfo
- isFileOpen()
: gmx::AbstractPlotModule
- isFinished()
: gmx::internal::AnalysisDataStorageFrameData
- isHidden()
: gmx::AbstractOptionStorage
, gmx::OptionInfo
- isInitialized()
: gmx::TrajectoryAnalysisModuleData::Impl
, gmx::AnalysisDataFrameLocalData< ValueType >
- isInputFile()
: gmx::FileNameOptionStorage
, gmx::FileNameOptionInfo
- isInputOutputFile()
: gmx::FileNameOptionStorage
, gmx::FileNameOptionInfo
- isInteractive()
: gmx::File
- isize
: gmx_ana_index_t
- isLibraryFile()
: gmx::FileNameOptionStorage
, gmx::FileNameOptionInfo
- isMultipoint()
: gmx::test::AnalysisDataTestInput
, gmx::AbstractAnalysisData
, gmx::internal::AnalysisDataStorageImpl
- isNaN()
: gmx::test::FloatingPointDifference
- isNotified()
: gmx::internal::AnalysisDataStorageFrameData
- isOutputFile()
: gmx::FileNameOptionInfo
, gmx::FileNameOptionStorage
- isPresent()
: gmx::AnalysisDataValue
- isRequired()
: gmx::AbstractOptionStorage
, gmx::OptionInfo
- isSet()
: gmx::AnalysisDataValue
, gmx::AbstractOptionStorage
, gmx::OptionInfo
, gmx::Options
- isStarted()
: gmx::internal::AnalysisDataStorageFrameData
- isSupported()
: gmx::Regex
- isTime()
: gmx::FloatOptionStorage
, gmx::DoubleOptionStorage
, gmx::DoubleOptionInfo
, gmx::FloatOptionInfo
- isTrajectoryOption()
: gmx::FileNameOptionInfo
, gmx::FileNameOptionStorage
- isType()
: gmx::OptionInfo
- isValid()
: gmx::AnalysisDataFrameRef
, gmx::AnalysisDataFrameHeader
, gmx::AnalysisNeighborhoodPair
, gmx::Selection
, gmx::AnalysisDataHandle
- isValidType()
: gmx::anonymous_namespace{filenameoption.cpp}::FileTypeHandler
, gmx::FileNameOptionStorage
, gmx::FileNameOptionInfo
- isVector()
: gmx::AbstractOptionStorage
, gmx::AbstractOption
- isWithin()
: gmx::test::FloatingPointTolerance
, gmx::AnalysisNeighborhoodSearch
- isWriteMode()
: gmx::test::TestReferenceChecker
, gmx::test::TestReferenceData
- iter_
: gmx::SelectionParserSymbolIterator::Impl
- iterator
: gmx::ConstArrayRef< T >
, gmx::ArrayRef< T >
- IteratorType
: gmx::SelectionParserSymbolIterator::Impl
- itype
: gmx_ana_poscalc_t