Gromacs
5.1.4
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Enumerated types used in the "Computational Electrophysiology" module.
The following enums are mainly used for indexing arrays and when looping over the available ions, channels, or compartments. This hopefully adds to the code's readability because it makes clear which object is dealt with in a block of code.
Enumerations | |
enum | eCompartment { eCompA, eCompB, eCompNR } |
The two compartments for CompEL setups. | |
enum | eIontype { eIonNEG, eIonPOS, eIonNR } |
The positive and negative ions CompEL setups. More... | |
enum | eChannel { eChan0, eChan1, eChanNR } |
The channels that define with their COM the compartment boundaries in CompEL setups. More... | |
enum eChannel |
The channels that define with their COM the compartment boundaries in CompEL setups.
In principle one could also use modified setups with more than two channels.
enum eIontype |
The positive and negative ions CompEL setups.
Future versions of the protocol might consider more than two types of ions.