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gmx::LegacySimulatorData Class Reference

#include <gromacs/mdrun/isimulator.h>

+ Inheritance diagram for gmx::LegacySimulatorData:
+ Collaboration diagram for gmx::LegacySimulatorData:

Description

The legacy simulator data.

This contains the data passed into the GROMACS simulators from the Mdrunner object.

Public Member Functions

 LegacySimulatorData (FILE *fplog, t_commrec *cr, const gmx_multisim_t *ms, const MDLogger &mdlog, int nfile, const t_filenm *fnm, const gmx_output_env_t *oenv, const MdrunOptions &mdrunOptions, StartingBehavior startingBehavior, VirtualSitesHandler *vsite, Constraints *constr, gmx_enfrot *enforcedRotation, BoxDeformation *deform, IMDOutputProvider *outputProvider, const MDModulesNotifiers &mdModulesNotifiers, t_inputrec *inputrec, ImdSession *imdSession, pull_t *pull_work, t_swap *swap, const gmx_mtop_t &top_global, gmx_localtop_t *top, t_state *state_global, t_state *state, ObservablesHistory *observablesHistory, MDAtoms *mdAtoms, t_nrnb *nrnb, gmx_wallcycle *wcycle, t_forcerec *fr, gmx_enerdata_t *enerd, ObservablesReducerBuilder *observablesReducerBuilder, gmx_ekindata_t *ekind, MdrunScheduleWorkload *runScheduleWork, const ReplicaExchangeParameters &replExParams, gmx_membed_t *membed, gmx_walltime_accounting *walltime_accounting, std::unique_ptr< StopHandlerBuilder > stopHandlerBuilder, bool doRerun)
 The constructor.
 

Public Attributes

FILE * fpLog_
 Handles logging.
 
t_commrec * cr_
 Handles communication.
 
const gmx_multisim_tms_
 Coordinates multi-simulations.
 
const MDLoggermdLog_
 Handles logging.
 
int nFile_
 Count of input file options.
 
const t_filenmfnm_
 Content of input file options.
 
const gmx_output_env_t * oenv_
 Handles writing text output.
 
const MdrunOptionsmdrunOptions_
 Contains command-line options to mdrun.
 
const StartingBehavior startingBehavior_
 Whether the simulation will start afresh, or restart with/without appending.
 
VirtualSitesHandlervirtualSites_
 Handles virtual sites.
 
Constraintsconstr_
 Handles constraints.
 
gmx_enfrotenforcedRotation_
 Handles enforced rotation.
 
BoxDeformation * deform_
 Handles box deformation.
 
IMDOutputProvideroutputProvider_
 Handles writing output files.
 
const MDModulesNotifiersmdModulesNotifiers_
 Handles notifications to MDModules for checkpoint writing.
 
const t_inputrec * inputRec_
 Contains user input mdp options. Note: The const-ness is casted away in a few instances, see #3854.
 
ImdSession * imdSession_
 The Interactive Molecular Dynamics session.
 
pull_t * pullWork_
 The pull work object.
 
t_swapswap_
 The coordinate-swapping session.
 
const gmx_mtop_t & topGlobal_
 Full system topology.
 
gmx_localtop_ttop_
 Handle to local simulation topology.
 
t_statestateGlobal_
 Full simulation state (only non-nullptr on main rank).
 
t_statestate_
 Handle to local state of the simulation.
 
ObservablesHistoryobservablesHistory_
 History of simulation observables.
 
MDAtomsmdAtoms_
 Atom parameters for this domain.
 
t_nrnb * nrnb_
 Manages flop accounting.
 
gmx_wallcycle * wallCycleCounters_
 Manages wall cycle accounting.
 
t_forcerec * fr_
 Parameters for force calculations.
 
gmx_enerdata_tenerd_
 Data for energy output.
 
ObservablesReducerBuilderobservablesReducerBuilder_
 Builder for coordinator of reduction for observables.
 
gmx_ekindata_t * ekind_
 Kinetic energy data.
 
MdrunScheduleWorkload * runScheduleWork_
 Schedule of work for each MD step for this task.
 
const ReplicaExchangeParametersreplExParams_
 Parameters for replica exchange algorihtms.
 
gmx_membed_t * membed_
 Parameters for membrane embedding.
 
gmx_walltime_accountingwallTimeAccounting_
 Manages wall time accounting.
 
std::unique_ptr
< StopHandlerBuilder
stopHandlerBuilder_
 Registers stop conditions.
 
bool doRerun_
 Whether we're doing a rerun.
 

The documentation for this class was generated from the following file: