Here is a list of all documented class members with links to the class documentation for each member:

- b -

• b : t_pargs , BondedInteractionList , gmx_ana_selvalue_t , gmx::UniformIntDistribution< IntType > , gmx::UniformRealDistribution< RealType >::param_type , gmx::CromerMannParameters , gmx::UniformRealDistribution< RealType > , gmx_ana_poscalc_t , gmx_ana_indexmap_t , gmx::UniformIntDistribution< IntType >::param_type
• b0 : anonymous_namespace{lincs.cpp}::Task
• b1 : anonymous_namespace{lincs.cpp}::Task
• bAcceptBooleanNoPrefix_ : gmx::OptionsAssigner::Impl
• back() : gmx::ArrayRef< typename > , gmx::ListOfLists< typename > , gmx::internal::SimdArrayRef< T > , gmx::FixedCapacityVector< typename, size_t >
• backboneIndices_ : gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo
• backboneIndicesStatus_ : gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo
• backup_file() : gmx::ColvarProxyGromacs
• bAllowMissing_ : gmx::AnalysisDataModuleManager::Impl
• bAllowPositionalArguments_ : gmx::CommandLineParser::Impl
• bAllowReduceIact : UmbrellaOptions
• bAlreadyPresent : MoleculePatch
• baros_integral : t_state
• barrier() : gmx::PhysicalNodeCommunicator
• Base() : gmx::KeyValueTreeTransformRuleBuilder::Base
• baseData() : gmx::internal::AnalysisDataStorageFrameData
• BaseEntry() : BaseEntry
• baseid : gmx_ana_poscalc_t
• baseLatency : gmx::HardwareTopology::Numa
• Basic : gmx::HardwareTopology , gmx::SelectionCollection::Impl
• basic_mdspan() : gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
• BasicAverageHistogramModule() : gmx::internal::BasicAverageHistogramModule
• BasicAverageHistogramModulePointer : gmx::internal::BasicHistogramImpl
• BasicHistogramImpl() : gmx::internal::BasicHistogramImpl
• basicTest() : gmx::test::TrajectoryFrameWriterTest
• BasicVector() : gmx::BasicVector< ValueType >
• bAuto : UmbrellaOptions
• bb : NbnxnPairlistCpuWork::IClusterData
• bBoolNo : gmx_sel_lexer_t
• bBox : TpxFileHeader
• bBuffer : gmx_sel_lexer_t
• bc : dd_corners_t
• bCalcTauInt : UmbrellaOptions
• bCmdStart : gmx_sel_lexer_t
• bCommIter : gmx::Lincs
• bConnected : gmx::ImdSession::Impl
• bConstForce : anonymous_namespace{edsam.cpp}::t_edflood
• bContrib : t_UmbrellaWindow
• bcr1 : dd_corners_t
• bCumulative_ : gmx::AnalysisDataLifetimeModule::Impl
• bCycl : UmbrellaOptions
• bDataProperty_ : gmx::AnalysisDataModuleManager::Impl
• bDiscrete : t_matrix
• bDoTime : NbnxmGpu
• bDynamicBox : nbnxn_atomdata_t
• begin() : gmx::EnergyTerm , gmx::IntegerBox , gmx::internal::SimdArrayRef< T > , AtomRange , IListRange , gmx::EnergyFrame , gmx::FixedCapacityVector< typename, size_t > , gmx::ArrayRef< typename > , gmx::EnumerationWrapper< EnumType, Last, Step > , gmx::EnumerationArray< EnumType, DataType, ArraySize > , gmx::Range< typename >
• beginIterator() : gmx::SelectionParserSymbolTable
• BenchmarkSystem() : gmx::BenchmarkSystem
• bEquil : df_history_t
• bestVertex() : gmx::NelderMeadSimplex
• beta : gmx::DimParams::FepDimParams , gmx::test::AwhTestParameters
• betak : gmx::DimParams::PullDimParams
• bEval : gmx_ana_poscalc_t
• bExternalGroupsSet_ : gmx::SelectionCollection::Impl
• bExternalPotentialProviderHasBeenRegistered : pull_coord_work_t
• bF : TpxFileHeader
• bFactor() : PdbAtomEntry
• bFirst : gmx::AnalysisDataDisplacementModule::Impl
• bFirstRow_ : gmx::TextTableFormatter::Impl
• bForceActivated : gmx::ImdSession::Impl
• bForcesChanged() : gmx::ImdSession::Impl
• bGenerateHH14Interactions : PreprocessResidue
• bGroups : gmx_sel_lexer_t
• bHarmonic : anonymous_namespace{edsam.cpp}::t_edflood
• bHelix : t_bb
• bHidden_ : gmx::CommandLineHelpContext::Impl
• bHistOnly : UmbrellaOptions
• bhost_UNUSED : CheckpointHeaderContents
• Bias() : gmx::Bias
• bias() : gmx::PointState
• bias_ : gmx::BiasCoupledToSystem , gmx::test::BiasTest , gmx::test::BiasFepLambdaStateTest
• biasCorrectedAverage() : gmx::ExponentialMovingAverage
• BiasCoupledToSystem() : gmx::BiasCoupledToSystem
• BiasGrid() : gmx::BiasGrid
• biasIndex() : gmx::Bias
• biasIndex_ : gmx::BiasParams
• BiasOutputSetup() : BiasOutputSetup
• BiasParams() : gmx::BiasParams
• BiasState() : gmx::BiasState
• biasState_ : gmx::test::BiasStateTest
• BiasWriter() : gmx::BiasWriter
• bin : t_partition_item , methoddata_insolidangle
• binaryInfoSettings() : gmx::CommandLineCommonOptionsHolder
• binaryName_ : gmx::CommandLineModuleManager::Impl
• binCount() : gmx::AnalysisHistogramSettingsInitializer , gmx::AnalysisHistogramSettings
• bind() : gmx::RepeatingOptionSectionHandle< T >
• bindSession() : gmx::IRestraintPotential
• bInit_ : gmx::PositionCalculationCollection::Impl
• bInitPotByIntegration : UmbrellaOptions
• bInputCheckingDisabled_ : gmx::FileNameOptionManager::Impl
• bins : UmbrellaOptions
• bInUse_ : gmx::test::internal::TestReferenceDataImpl
• binWidth() : gmx::AnalysisHistogramSettingsInitializer , gmx::AnalysisHistogramSettings
• bIr : TpxFileHeader
• bKeepAllGeneratedDihedrals : PreprocessResidue
• blbnb : gmx::Lincs
• blc : gmx::Lincs
• blc1 : gmx::Lincs
• bllen : gmx::Lincs
• bllen0 : gmx::Lincs
• blmf : gmx::Lincs
• blmf1 : gmx::Lincs
• blnr : gmx::Lincs
• Block : gmx::RangePartitioning
• block() : gmx::RangePartitioning
• blocka_ : anonymous_namespace{indexutil.cpp}::IndexBlockTest
• blockConnect() : gmx::ImdSession::Impl
• blockDataList() : gmx::CorrelationTensor
• blockDataListSize() : gmx::CorrelationGrid
• blockIndex : MolecularTopologyAtomIndices
• blockLength() : gmx::CorrelationBlockData
• BlockLengthMeasure : gmx::CorrelationGrid
• blockLengthMeasure_ : gmx::CorrelationGrid
• blockSize : KernelLaunchConfig
• blockstack : gmx_sel_mempool_t
• blockstack_nalloc : gmx_sel_mempool_t
• blockSumSquareWeight() : gmx::CorrelationBlockData
• blockSumWeight() : gmx::CorrelationBlockData
• blockSumWeightX : gmx::CorrelationBlockData::CoordData
• bLog : UmbrellaOptions
• bMatchBool : gmx_sel_lexer_t
• bMatchOf : gmx_sel_lexer_t
• bMultipoint_ : gmx::AbstractAnalysisData::Impl
• bNewForces : gmx::ImdSession::Impl
• bNonLocalStreamDoneMarked : NbnxmGpu
• bNPT : gmx_repl_ex
• body : PartialDeserializedTprFile
• bond : VirtualSiteTopology
• bondAtomTypeFromAtomType() : PreprocessingAtomTypes
• bondAtomTypeFromName() : PreprocessingBondAtomType
• bonded_threading_t() : bonded_threading_t
• bondedStream() : gmx::DeviceStreamManager
• bonds : AllVsiteBondedInteractions
• BooleanOption() : gmx::BooleanOption
• BooleanOptionInfo() : gmx::BooleanOptionInfo
• BooleanOptionStorage() : gmx::BooleanOptionStorage
• boolt : gmx::SelectionTreeElement
• BoolType : ScalarDataTypes , gmx::BoolType
• bOrires : t_mdatoms
• bound() : WorkDivision
• bOut : gmx_enfrot
• box : gmx::OutputRequirements , t_state , gmx::BenchmarkSystem , gmx::test::anonymous_namespace{kernel_test.cpp}::TestSystem , gmx_pme_comm_n_box_t , t_pbc , gmx::StatePropagatorData , gmx::TrajectoryFrame , gmx::test::TrajectoryTolerances
• box_ : gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest , gmx::MDModulesAtomsRedistributedSignal , gmx::ForceProviderInput
• box_rel : t_state
• BoxDeformationHandle() : gmx::BoxDeformationHandle
• boxOutputInterval : gmx_tng_trajectory
• boxScaler : PmeShared
• boxv : gmx::PTCouplingArrays , t_state
• boxVelocities() : gmx::MttkData , gmx::ParrinelloRahmanBarostat
• boxVolume : PmeGpuDynamicParams , SolveKernelParams
• boxXX : PbcAiuc
• boxYX : PbcAiuc
• boxYY : PbcAiuc
• boxZX : PbcAiuc
• boxZY : PbcAiuc
• boxZZ : PbcAiuc
• bParallel : gmx::AnalysisDataModuleManager::Impl::ModuleInfo
• bParallelModules_ : gmx::AnalysisDataModuleManager::Impl
• bPBC : t_methoddata_pos , gmx::TrajectoryAnalysisSettings::Impl
• bPerturbed : t_mdatoms
• bPrefetchLjParam : NbnxmGpu
• bPrintCOM : t_UmbrellaHeader
• bPrintComp : t_UmbrellaHeader
• bPrintHeader_ : gmx::TextTableFormatter::Impl
• bPrintRefValue : t_UmbrellaHeader
• bProcessed : MoleculeInformation
• bProf0Set : UmbrellaOptions
• bPullx : UmbrellaOptions
• bQuiet_ : gmx::CommandLineModuleManager::Impl
• brandString() : gmx::CpuInfo
• bRemoveDihedralIfWithImproper : PreprocessResidue
• bRmPBC : gmx::TrajectoryAnalysisSettings::Impl
• broadcast() : gmx::BiasState
• broadcastCheckpointValues() : gmx::NoseHooverGroup
• broadcastState() : gmx::DensityFittingForceProviderState
• bSelfTestMode_ : gmx::test::TestReferenceChecker::Impl , gmx::test::internal::TestReferenceDataImpl
• bSerialModules_ : gmx::AnalysisDataModuleManager::Impl
• bSet : t_pargs , t_nbparam
• bSkipUnknown_ : gmx::CommandLineParser::Impl
• bSorted : t_methoddata_same
• bsp_mod : PmeShared
• bsSeed : UmbrellaOptions
• bStatic : gmx_ana_indexmap_t
• bsWeight : t_UmbrellaWindow
• bSym : UmbrellaOptions
• bTakeComplement : gmx_help_make_index_group
• bTaskDep : gmx::Lincs
• bTaskDepTri : gmx::Lincs
• bTerminatable : gmx::ImdSession::Impl
• btime_UNUSED : CheckpointHeaderContents
• bTop : TpxFileHeader
• bucket_count() : gmx::HashedMap< T >
• buf : t_symbuf
• buffer : gmx_sel_mempool_t , gmx_sel_lexer_t
• buffer_flags : nbnxn_atomdata_t , PairsearchWork
• bufferPtr() : SystemMomentum
• bufsize : t_symbuf , gmx_enfrot
• bugs_ : gmx::CommandLineHelpWriter::Impl
• build() : gmx::NoseHooverChainsData , gmx::MdrunnerBuilder , StringTableBuilder , gmx::KeyValueTreeBuilder , gmx::DomDecHelperBuilder , gmx::DomainDecompositionBuilder::Impl , gmx::CheckpointHelperBuilder , gmx::LoggerBuilder , gmx::SignallerBuilder< Signaller > , gmx::KeyValueTreeValueBuilder , gmx::TopologyHolder::Builder , gmx::MttkData , gmx::SignallerBuilder< Signaller > , gmx::GpuTaskAssignmentsBuilder , gmx::DomainDecompositionBuilder , gmx::SimulatorBuilder , gmx::ObservablesReducerBuilder , gmx::MttkPropagatorConnection , gmx::SignallerBuilder< Signaller > , gmx::ModularSimulatorAlgorithmBuilder , gmx::TrajectoryElementBuilder
• buildCoordinates() : gmx::analysismodules::anonymous_namespace{msd.cpp}::MsdCoordinateManager
• builder : gmx::test::anonymous_namespace{observablesreducer.cpp}::ObservablesReducerIntegrationTest::RankData , gmx::internal::AnalysisDataStorageFrameData
• builder_ : gmx::KeyValueTreeTransformRuleBuilder::Base , gmx::MDModulesWriteCheckpointData
• builderData() : gmx::ModularSimulatorAlgorithmBuilderHelper
• builders_ : gmx::internal::AnalysisDataStorageImpl
• buildHasBeenCalled_ : gmx::ObservablesReducerBuilder::Impl
• buildMdpOutput() : gmx::QMMMOptions , gmx::DensityFittingOptions , gmx::MDModules , gmx::anonymous_namespace{electricfield.cpp}::ElectricFieldDimension , gmx::ColvarsOptions , gmx::anonymous_namespace{electricfield.cpp}::ElectricField , gmx::IMdpOptionProvider
• buildParameters() : gmx::DensityFittingOptions
• bUpToDate : ekinstate_t
• bus : gmx::HardwareTopology::Device
• bUse : t_coordselection
• bUseBufferFlags : nbnxn_atomdata_t
• buser_UNUSED : CheckpointHeaderContents
• bUseTwoStreams : NbnxmGpu
• bV : TpxFileHeader
• bVCMgrps : t_mdatoms
• bWarned : AtomProperties::Impl
• bWarnVDW : AtomProperties::Impl
• bWConnect : gmx::ImdSession::Impl
• bWrap_ : gmx::TextTableFormatter::Impl::ColumnData
• bX : TpxFileHeader
• bXSet : MoleculePatch