- d -
- d2a
: gmx::analysismodules::anonymous_namespace{sasa.cpp}::t_conect
- d2b
: gmx::analysismodules::anonymous_namespace{sasa.cpp}::t_conect
- d3
: t_bb
- d4
: t_bb
- d5
: t_bb
- d_cell
: gmx::cellInfo
- d_coefficients
: PmeGpuAtomParams
- d_coordinates
: PmeGpuAtomParams
- d_dtheta
: PmeGpuAtomParams
- d_fftComplexGrid
: PmeGpuGridParams
- d_fftRealGrid
: PmeGpuSpecific
- d_forces
: PmeGpuAtomParams
- d_fractShiftsTable
: PmeGpuGridParams
- d_gridlineIndices
: PmeGpuAtomParams
- d_gridlineIndicesTable
: PmeGpuGridParams
- d_realGrid
: PmeGpuGridParams
- d_recvGrids
: PmeGpuHaloExchange
- d_rollingPruningPart
: Nbnxm::gpu_plist
- d_rollingPruningPart_size
: Nbnxm::gpu_plist
- d_rollingPruningPart_size_alloc
: Nbnxm::gpu_plist
- d_sendGrids
: PmeGpuHaloExchange
- d_splineModuli
: PmeGpuGridParams
- d_theta
: PmeGpuAtomParams
- d_virialAndEnergy
: PmeGpuConstParams
- data
: gmx_sparsematrix
, gmx_enfrot
, t_forcetable
- data_
: gmx::GaussTransform3D::Impl
, anonymous_namespace{indexutil.cpp}::IndexBlockTest
, gmx::internal::AnalysisDataHandleImpl
, gmx::internal::AnalysisDataStorageImpl
, gmx::MrcDensityMapOfFloatReader::Impl
, gmx::MrcDensityMapOfFloatWriter::Impl
- dataMode_
: gmx::MrcDensityMapHeader
- datasetNames_
: gmx::TrajectoryAnalysisModule::Impl
- datasets_
: gmx::TrajectoryAnalysisModule::Impl
- dataStatistics_
: gmx::MrcDensityMapHeader
- db
: AtomProperty
- dd_nc
: CheckpointHeaderContents
- ddBondedChecking
: gmx::DomdecOptions
- ddBondedChecking_
: ReverseTopOptions
- ddbox_
: gmx::DomainDecompositionBuilder::Impl
- ddBoxIsDynamic
: UnitCellInfo
- ddCellIndex_
: gmx::DomainDecompositionBuilder::Impl
- ddDimensions
: DDGridSetup
- ddGridSetup_
: gmx::DomainDecompositionBuilder::Impl
- ddist
: gmx::Lincs
- ddp_count
: t_state
- ddp_count_cg_gl
: t_state
- ddpCountPairSearch
: anonymous_namespace{minimize.cpp}::EnergyEvaluator
- ddRankSetup_
: gmx::DomainDecompositionBuilder::Impl
- ddSettings_
: gmx::DomainDecompositionBuilder::Impl
- debug
: gmx::MDLogger
- debugLevel_
: gmx::SelectionCollection::Impl
- def
: AtomProperty
- defaultFileName_
: gmx::FileNameOptionManager::Impl
- defaultNstImd
: gmx::ImdSession::Impl
- defaultTolerance
: gmx::CubicSplineTable
, gmx::QuadraticSplineTable
- defaultTolerance_
: gmx::test::TestReferenceChecker::Impl
- defining_atomnames
: gmx_help_make_index_group
- deform
: gmx::BoxDeformationHandle
- deform_
: gmx::LegacySimulatorData
- degangle
: gmx_potfit
, gmx_enfrotgrp
- dekindl
: ekinstate_t
- delta
: gmx::shakedata
- delta_t
: gmx::SimulationTimeStep
- deltaF
: anonymous_namespace{edsam.cpp}::t_edflood
- deltaF0
: anonymous_namespace{edsam.cpp}::t_edflood
- deltaLambda
: gmx::test::anonymous_namespace{freeenergyparameters.cpp}::FreeEnergyParameterTestParameters
- deltaQ
: t_swap
- derivative
: gmx::AnalyticalSplineTableInput
, gmx::NumericalSplineTableInput
- desc
: t_pargs
, t_mapping
, gmx::AnalyticalSplineTableInput
, gmx::NumericalSplineTableInput
- description
: gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}::RocfftPlan
- destinations
: gmx_repl_ex
- dev
: gmx::HardwareTopology::Device
- dev_rundata
: NbnxmGpu
- deviceContext_
: PmeGpuProgramImpl
, PmeGpuSpecific
, NbnxmGpu
- deviceDetectionWarnings_
: gmx::DeviceDetectionResult
- deviceId
: gmx::HardwareTopology::Device
- deviceId_
: gmx::GpuTaskMapping
- deviceInfoList_
: gmx::DeviceDetectionResult
- devices
: gmx::HardwareTopology::Machine
- devicesSelectedByUser
: gmx_hw_opt_t
- deviceStreams
: NbnxmGpu
- deviceVendor
: DeviceInformation
- dfhist
: t_state
- dhdlambda
: anonymous_namespace{lincs.cpp}::Task
- dHH
: SettleWaterTopology
- diagonal_2xnn_j_minus_i
: nbnxn_atomdata_t::SimdMasks
- diagonal_4xn_j_minus_i
: nbnxn_atomdata_t::SimdMasks
- didPairlistH2D
: Nbnxm::GpuTimers::Interaction
, NbnxmGpu
- didPrune
: Nbnxm::GpuTimers::Interaction
, NbnxmGpu
- didRollingPrune
: NbnxmGpu
, Nbnxm::GpuTimers::Interaction
- diffusionCoefficient
: gmx::analysismodules::anonymous_namespace{msd.cpp}::MoleculeData
, gmx::analysismodules::anonymous_namespace{msd.cpp}::MsdGroupData
- dihedrals
: AllVsiteBondedInteractions
- dim
: t_pullcoord
, t_pbc
- dimParams
: gmx::test::AwhTestParameters
- dimParams_
: gmx::DimParams
- dir_
: gmx::DataFileInfo
- dispersion_shift
: NBParamGpu
, cl_nbparam_params
- disre_initf
: history_t
- disre_rm3tav
: history_t
- dist
: swap_compartment
- distance_squared_tolerance
: gmx::shakedata
- distanceIJ
: gmx::PairDistValue
- distArray_
: gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData
- distccut
: methoddata_insolidangle
- dlbOption
: gmx::DomdecOptions
- dlbScaling
: gmx::DomdecOptions
- doAll
: Nbnxm::KernelBenchOptions
- dOH
: SettleWaterTopology
- domain
: gmx::HardwareTopology::Device
- domainGroups
: AtomDistribution
- domdec_
: gmx::DomainInfo
- domdecOptions
: gmx::LegacyMdrunOptions
- doNeighborSearch
: gmx::StepWorkload
- donor_
: gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo
- donorEnergy_
: gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo
- doParsing_
: gmx::ColvarProxyGromacs
- doRerun_
: gmx::LegacySimulatorData
- doTestParticleInsertion_
: Nbnxm::GridSet::DomainSetup
- double_prec
: CheckpointHeaderContents
- doubleToler
: gmx::test::anonymous_namespace{pairs.cpp}::ListInput
, gmx::test::anonymous_namespace{nb_free_energy.cpp}::ListInput
- dsspData_
: gmx::analysismodules::anonymous_namespace{dssp.cpp}::DsspStorageFrame
- dt
: t_UmbrellaWindow
, UmbrellaOptions
, anonymous_namespace{edsam.cpp}::t_edflood
, gmx::AnalysisDataDisplacementModule::Impl
- DTensors
: t_oriresdata
- DTensorsEnsembleAv
: t_oriresdata
- DTensorsTimeAndEnsembleAv
: t_oriresdata
- dtoler
: gmx::test::anonymous_namespace{bonded.cpp}::iListInput
- dtSample_
: gmx::CorrelationGrid
- dummy
: gmx_cache_protect_t
- dummyMass
: VirtualSiteConfiguration
- dummySelection_
: gmx::test::ModuleTest
- dummyTopology_
: gmx::test::ModuleTest
- dv
: pull_group_work_t
- dvdl
: DispersionCorrection::Correction
- dvdl_lin
: gmx_enerdata_t
- dvdl_nonlin
: gmx_enerdata_t
- dvdlambda
: gmx::test::anonymous_namespace{bonded.cpp}::OutputQuantities
- dvdLambda
: gmx::test::anonymous_namespace{pairs.cpp}::OutputQuantities
, gmx::test::anonymous_namespace{nb_free_energy.cpp}::OutputQuantities
- dxdf
: gmx::VsiteThread
- dynamicGroup0
: pull_coord_work_t
- dynamicPruneTime
: gmx_wallclock_gpu_nbnxn_t