- n -
- N
: t_UmbrellaWindow
, t_bb
- n
: t_coordselection
, t_methoddata_kwreal
, methoddata_permute
, partition
, wallcc_t
, gmx_fft_fftpack
, spheresurfacebin
, t_methoddata_kwint
- n_alloc
: spheresurfacebin
- n_at_lam
: df_history_t
- na_c
: Nbnxm::gpu_plist
- na_ci
: NbnxnPairlistCpu
- na_cj
: NbnxnPairlistCpu
- nalloc
: gmx_sparsematrix
, gmx_ana_selvalue_t
, swap_compartment
- nalloc_index
: gmx_ana_index_t
- nalloc_loc
: gmx::ImdSession::Impl
- nalloc_x
: gmx_ana_pos_t
- name
: gmx_moltype_t
, MoleculeInformation
, MoleculePatchDatabase
, MoleculeType
, gmx::SelectionTreeElement
, t_register_method
, gmx_ana_selmethod_t
, gmx_ana_selparam_t
, gmx::ConvertTprInfo
, gmx::NonbondedBenchmarkInfo
, IndexGroup
- name_
: gmx::ColvarsModuleInfo
, gmx::DensityFittingModuleInfo
, gmx::QMMMModuleInfo
, gmx::internal::OptionSectionImpl
, gmx::SelectionParserSymbol::Impl
, gmx::DataFileInfo
- names
: gmx_ana_indexgrps_t
- namesOfEnergiesToMatch_
: gmx::test::PeriodicActionsTest
- nas
: t_methoddata_same
- nat
: gmx::ImdSession::Impl
, ilist_data_t
, gmx_slabdata
- nat_loc
: gmx::ImdSession::Impl
- nAtoms
: PmeGpuAtomParams
- natoms
: gmx_pme_comm_n_box_t
, CheckpointHeaderContents
, TpxFileHeader
- natoms_local
: nbnxn_atomdata_t
- nAtomsAlloc
: PmeGpu
- natpair_lj_
: PairlistSet
- natpair_ljq_
: PairlistSet
- natpair_q_
: PairlistSet
- nattempt
: gmx_repl_ex
- nb
: t_methoddata_distance
- nb_c
: gmx_wallclock_gpu_nbnxn_t
- nb_d2h
: Nbnxm::GpuTimers::XFTransfers
- nb_d2h_t
: gmx_wallclock_gpu_nbnxn_t
- nb_h2d
: Nbnxm::GpuTimers::XFTransfers
- nb_h2d_t
: gmx_wallclock_gpu_nbnxn_t
- nb_k
: Nbnxm::GpuTimers::Interaction
- nbfp
: NBParamGpu
, nbnxn_atomdata_t::Params
- nbfp_aligned
: nbnxn_atomdata_t::Params
- nbfp_comb
: nbnxn_atomdata_t::Params
, NBParamGpu
- nbfp_comb_texobj
: NBParamGpu
- nbfp_texobj
: NBParamGpu
- nBin
: t_UmbrellaWindow
- nbins
: methoddata_insolidangle
- nbl_fep
: PairsearchWork
- nblocks
: gmx_sel_mempool_t
- nbnxmSimd
: Nbnxm::KernelBenchOptions
- nBootStrap
: UmbrellaOptions
- nbparam
: NbnxmGpu
- nbsearch
: t_methoddata_distance
- nbst
: NbnxmGpu
- nc
: gmx::Lincs
- nc_real
: gmx::Lincs
- ncc
: gmx::Lincs
- ncc_triangle
: gmx::Lincs
- ncg
: gmx::Lincs
- ncg_flex
: gmx::Lincs
- ncg_triangle
: gmx::Lincs
- nChargePerturbed
: t_mdatoms
- ncj_hlj
: NbnxnPairlistCpuWork
- ncj_noq
: NbnxnPairlistCpuWork
- ncjInUse
: NbnxnPairlistCpu
- ncjPacked
: Nbnxm::gpu_plist
- nColvarsAtoms_
: gmx::ColvarsForceProviderState
- nCoordsel
: UmbrellaOptions
- nctl
: MoleculePatch
- ncxy_ind
: NbnxmGpu
- ncxy_ind_alloc
: NbnxmGpu
- ncxy_na
: NbnxmGpu
- ncxy_na_alloc
: NbnxmGpu
- nCyl
: swap_group
- nCylBoth
: swap_group
- ndata
: gmx_sparsematrix
- ndecompdim
: PmeShared
- ndim
: gmx::AnalysisDataDisplacementModule::Impl
, gmx_fft_fftw3
, gmx_fft_mkl
, t_pullcoord
- ndim_ePBC
: t_pbc
- ndistc
: PairsearchWork
- nED
: CheckpointHeaderContents
- needsMasses_
: gmx::SelectionTopologyProperties
- needsTopology_
: gmx::SelectionTopologyProperties
- needToCalcCom
: pull_group_work_t
- neg_2log
: nbnxn_atomdata_t::Params
- neig
: anonymous_namespace{edsam.cpp}::t_eigvec
- neighbor
: gmx::GridPoint
- nenergrp
: t_mdatoms
, nbnxn_atomdata_t::Params
- neom
: gmx_sel_lexer_t
- neutronIsotropicScatteringLength
: gmx::AtomicStructureFactor
- newBox
: gmx::OutputRequirements
- newx
: MoleculePatch
- nex
: gmx_repl_ex
- nexchange
: gmx_repl_ex
- nexcl
: Nbnxm::gpu_plist
- nexpsel
: gmx_sel_lexer_t
- next
: gmx_ana_poscalc_t
, gmx::SelectionTreeElement
, t_symbuf
, gmx_fft_fftpack
, gmx::detail::extents_analyse< R, E0, StaticExtents...>
, gmx::detail::extents_analyse< R, dynamic_extent, StaticExtents...>
- nextHeavyType
: VirtualSiteConfiguration
- nextIndex_
: gmx::internal::AnalysisDataStorageImpl
- nextLineIndex_
: gmx::TextTableFormatter::Impl::ColumnData
- nextLineOffset_
: gmx::TextTableFormatter::Impl::ColumnData
- nextMethodSymbol
: gmx_sel_lexer_t
- nextparam
: gmx_sel_lexer_t
- nextResi_
: gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo
- nFile_
: gmx::LegacySimulatorData
- nforces
: gmx::ImdSession::Impl
- ngrids
: PmeShared
- ngroup
: t_pullcoord
- ngrp
: t_swap
- ngtc
: CheckpointHeaderContents
, t_state
, TpxFileHeader
- nhchainlength
: CheckpointHeaderContents
, t_state
- nhpres_vxi
: gmx::PTCouplingArrays
, t_state
- nhpres_xi
: gmx::PTCouplingArrays
, t_state
- nhx
: t_bb
- nHydrogens
: VirtualSiteConfiguration
- nimask
: Nbnxm::gpu_plist
- nIter
: gmx::Lincs
- nk
: PmeShared
- nLambda
: gmx::test::anonymous_namespace{freeenergyparameters.cpp}::FreeEnergyParameterTestParameters
- nlambda
: CheckpointHeaderContents
, df_history_t
- nlhelp
: gmx_ana_selmethod_help_t
- nlocat
: gmx::Lincs
- nMassPerturbed
: t_mdatoms
- nmax
: gmx::AnalysisDataDisplacementModule::Impl
- nmol
: gmx_molblock_t
- nMol
: swap_compartment
- nMolAv
: swap_compartment
- nMolBefore
: swap_compartment
- nMolPast
: swap_compartment
- nMolReq
: swap_compartment
- nmoves
: gmx_repl_ex
- nn
: PmeShared
- nname
: MoleculePatch
- Nnext
: t_bb
- nnhpres
: t_state
, CheckpointHeaderContents
- nnodes
: PmeShared
, CheckpointHeaderContents
- nnodesX
: PmeShared
- nnodesY
: PmeShared
- nodeid
: PmeShared
- nodeidX
: PmeShared
- nodeidY
: PmeShared
- nodes
: gmx::HardwareTopology::Numa
- nonbondedParameters
: gmx::BenchmarkSystem
, gmx::test::anonymous_namespace{kernel_test.cpp}::TestSystem
- nonlocal_done
: NbnxmGpu
- nOrder
: gmx::Lincs
- normalDistribution
: UmbrellaOptions
- normalizationType_
: gmx::AwhEnergyBlock
- normalizationValue_
: gmx::AwhEnergyBlock
- normalizeDensities_
: gmx::DensityFittingParameters
- nosehoover_vxi
: gmx::PTCouplingArrays
, t_state
- nosehoover_xi
: gmx::PTCouplingArrays
, t_state
- notifiers_
: gmx::DomainDecompositionBuilder::Impl
- nparams
: gmx_ana_selmethod_t
- npbcdim
: UnitCellInfo
- nPerturbed
: t_mdatoms
- npme
: CheckpointHeaderContents
- nPull
: t_UmbrellaWindow
- npullcrds
: t_UmbrellaHeader
- nr
: MoleculePatch
, t_mdatoms
, gmx_ana_selvalue_t
- nral
: LocalSettleData
- nrecv
: gmx_specatsend_t
- nrepl
: gmx_repl_ex
- nreq
: gmx_domdec_specat_comm_t
- nrexcl
: MoleculeInformation
, PreprocessResidue
- nrms
: t_bb
- nrnb
: anonymous_namespace{minimize.cpp}::EnergyEvaluator
- nrnb_
: gmx::LegacySimulatorData
, gmx::Profiling
- nrow
: gmx_sparsematrix
- nscanTemporary
: Nbnxm::gpuPlistSorting
- nsci
: Nbnxm::gpu_plist
- nsciCounted
: Nbnxm::gpuPlistSorting
- nsciHistogram
: Nbnxm::gpuPlistSorting
- nsciOffset
: Nbnxm::gpuPlistSorting
- nsciSorted
: Nbnxm::gpuPlistSorting
- nst
: gmx_repl_ex
- nsteps_done
: gmx_walltime_accounting
- nsteps_done_at_reset
: gmx_walltime_accounting
- nstimd
: gmx::ImdSession::Impl
- nstimd_new
: gmx::ImdSession::Impl
- nstlist_cmdline
: gmx::LegacyMdrunOptions
- nstlistPrune
: PairlistParams
- nstored
: gmx::AnalysisDataDisplacementModule::Impl
- nstpcouple
: gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters
- nstrout
: gmx_enfrot
- nstsout
: gmx_enfrot
- ntask
: gmx::Lincs
- ntbins
: methoddata_insolidangle
- nth
: omp_module_nthreads_t
- nthreads
: bonded_threading_t
- nthreads_omp
: gmx_hw_opt_t
- nthreads_omp_pme
: gmx_hw_opt_t
- nthreads_tmpi
: gmx_hw_opt_t
- nthreads_tot
: gmx_hw_opt_t
- ntompOptionIsSet
: gmx::MdrunOptions
- Ntot
: t_UmbrellaWindow
- ntriangle
: gmx::Lincs
, anonymous_namespace{lincs.cpp}::Task
- ntric_vec
: t_pbc
- nTypePerturbed
: t_mdatoms
- num_defining_atomnames
: gmx_help_make_index_group
- numa
: gmx::HardwareTopology::Machine
- numAnglesRemoved
: gmx::QMMMTopologyInfo
- numaNodeId
: gmx::HardwareTopology::LogicalProcessor
, gmx::HardwareTopology::Core
, gmx::HardwareTopology::Device
- numAtoms
: PpRanksSendFInfo
, MoleculeType
, gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters
, PpRanks
, NBAtomDataGpu
, AtomDistribution::DomainAtomGroups
- numAtomsAlloc
: NBAtomDataGpu
- numAtomsICluster
: Nbnxm::Grid::Geometry
- numAtomsICluster2Log
: Nbnxm::Grid::Geometry
- numAtomsJCluster
: Nbnxm::Grid::Geometry
- numAtomsLocal
: NBAtomDataGpu
- numAtomsPerCell
: Nbnxm::Grid::Geometry
- numAtomsPerColumn
: Nbnxm::GridWork
- numAtomsPerMolecule
: MoleculeBlockIndices
- numAtomTypes
: gmx::BenchmarkSystem
, gmx::test::anonymous_namespace{kernel_test.cpp}::TestSystem
- numBondedInteractions
: thread_work_t
- numBondsRemoved
: gmx::QMMMTopologyInfo
- numBoundedDimensions
: UnitCellInfo
- numCells
: gmx::DomdecOptions
, Nbnxm::Grid::Dimensions
- numColumnRowSection_
: gmx::MrcDensityMapHeader
- numConnBondsAdded
: gmx::QMMMTopologyInfo
- numConstrainedBondsInQMSubsystem
: gmx::QMMMTopologyInfo
- numConstraints
: gmx::LincsDeviations
- numDDDimensions
: DDGridSetup
- numDegreesOfFreedom
: gmx::TemperatureCouplingData
- numDihedralsRemoved
: gmx::QMMMTopologyInfo
- numDim_
: gmx::test::FrictionMetricTest
- numDomains
: DDGridSetup
- numExchanges
: ReplicaExchangeParameters
- numExclusionsMade
: gmx::QMMMTopologyInfo
- numExperiments
: t_oriresdata
- numFepLambdaStates
: gmx::DimParams::FepDimParams
- numFile
: gmx::LegacyInput
- numFrames
: gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTestParameters
- numInteractions
: t_forcetable
- numIterations
: Nbnxm::KernelBenchOptions
- numLevels
: gmx::GromppMtsOpts
- numLinkBonds
: gmx::QMMMTopologyInfo
- numMMAtoms
: gmx::QMMMTopologyInfo
- numMolecules
: MoleculeType
- numOpenMPThreads
: gmx_walltime_accounting
- numPmeOnlyRanks
: DDGridSetup
- numPmeRanks
: gmx::DomdecOptions
- numPoints_
: gmx::test::FrictionMetricTest
- numPreIterations
: Nbnxm::KernelBenchOptions
- numQMAtoms
: gmx::QMMMTopologyInfo
- numRanks_
: gmx::test::anonymous_namespace{observablesreducer.cpp}::Subscriber
- numRanksPerSimulation_
: gmx::test::MultiSimTest
- numRestraints
: t_oriresdata
- numRollingPruningParts
: PairlistParams
- numSamplesUpdateFreeEnergy_
: gmx::BiasParams
- numSettle
: LocalSettleData
- numSettleRemoved
: gmx::QMMMTopologyInfo
- numSettles
: gmx::test::anonymous_namespace{settle.cpp}::SettleTestParameters
- numSharedUpdate
: gmx::BiasParams
- numSimulations_
: gmx_multisim_t
- numSteps
: gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters
- numStepsCommandline
: gmx::MdrunOptions
- numSubscribers_
: gmx::test::anonymous_namespace{observablesreducer.cpp}::ObservablesReducerIntegrationTest
- numTablePoints
: t_forcetable
- numTCoupleGroups
: gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters
- numThreads
: gmx::test::anonymous_namespace{kernel_test.cpp}::KernelOptions
, Nbnxm::KernelBenchOptions
- numTypes
: NBAtomDataGpu
, nbnxn_atomdata_t::Params
- numUsedLabels_
: gmx::CrystallographicLabels
- numVirtualSitesModified
: gmx::QMMMTopologyInfo
- numWarmupIterations
: Nbnxm::KernelBenchOptions
- nuse
: gmx::InterdependentTask
- nUse
: t_coordselection
- nvalptr
: gmx_ana_selparam_t
- nvars
: gmx_ana_selcollection_t
- nx
: t_matrix
, gmx_fft_mkl
- ny
: gmx_fft_mkl
, t_matrix