- r -
- r
: t_pargs
, gmx::SelectionParserValue
, t_compare_value
, t_methoddata_kwint
, gmx_ana_selvalue_t
, t_methoddata_kwreal
- r1
: gmx::SelectionParserValue
- r2
: gmx::SelectionParserValue
- radacc
: anonymous_namespace{edsam.cpp}::t_edvecs
- radcon
: anonymous_namespace{edsam.cpp}::t_edvecs
- radfix
: anonymous_namespace{edsam.cpp}::t_edvecs
- radius
: anonymous_namespace{edsam.cpp}::t_eigvec
- randomSeed
: ReplicaExchangeParameters
- rangeEnd
: gmx::VsiteThread
- rangeStart
: gmx::VsiteThread
- rank_
: gmx::PhysicalNodeCommunicator
, gmx::test::MultiSimTest
- rankData_
: gmx::test::anonymous_namespace{observablesreducer.cpp}::ObservablesReducerIntegrationTest
- rankId
: PpRanks
, PpRanksSendFInfo
- rankOrder
: gmx::DomdecOptions
- ranksX
: PmeGpuHaloExchange
- ranksY
: PmeGpuHaloExchange
- rb
: PreprocessResidue
, MoleculePatchDatabase
- rcoulomb_sq
: NBParamGpu
, cl_nbparam_params
- rcut_coulomb
: pme_setup_t
- ready
: gmx::PpCommManager
- real_fft
: gmx_fft_mkl
- real_transform
: gmx_fft_fftw3
- realddxyz
: gmx::LegacyMdrunOptions
- realGrid_
: gmx::Gpu3dFft::ImplSyclRocfft::Impl
- realGridCapacity
: PmeGpuSpecific
- realGridSize
: PmeGpuGridParams
, PmeGpuSpecific
, SolveKernelParams
- realGridSizeFP
: PmeGpuGridParams
- realGridSizePadded
: PmeGpuGridParams
- recalculateSplines
: PmeGpuSettings
- recipBox
: PmeGpuDynamicParams
, SolveKernelParams
- recordCycles_
: SearchCycleCounting
- redirector_
: gmx::FileNameOptionManager::Impl
- reduceSoon_
: gmx::ObservablesReducer::Impl
- reduceTask
: gmx::InterdependentTask
- reductionBuffer_
: gmx::LocalTopologyChecker::Impl
, ExclusionChecker::Impl
- ref
: gmx_slabdata
- refcount
: t_compiler_data
, gmx_ana_poscalc_t
- refCountArray_
: gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData
- refData_
: gmx::test::anonymous_namespace{constr.cpp}::ConstraintsTest
, gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest
, gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTest
, gmx::test::anonymous_namespace{settle.cpp}::SettleTest
- referenceFileNames_
: gmx::test::PeriodicActionsTest
- referencePositions
: gmx_enfrotgrp
- referenceProjectionSlope
: anonymous_namespace{edsam.cpp}::t_edflood
- referenceSquaredSum
: gmx::anonymous_namespace{densityfit.cpp}::CrossCorrelationEvaluationHelperValues
- referenceTemperature
: gmx::TemperatureCouplingData
- refid
: gmx_ana_indexmap_t
- refproj
: anonymous_namespace{edsam.cpp}::t_eigvec
- registeredCallbacks_
: gmx::ObservablesReducer::Impl
- relativeLatency
: gmx::HardwareTopology::Numa
- releaser
: gmx::OpenClTraits< cl_context >
, gmx::OpenClTraits< cl_command_queue >
, gmx::OpenClTraits< cl_program >
, gmx::OpenClTraits< cl_kernel >
- remainingMMCharge
: gmx::QMMMTopologyInfo
- repl
: gmx_repl_ex
- replacements_
: gmx::HelpWriterContext::Impl
- replExParams
: gmx::LegacyMdrunOptions
- replExParams_
: gmx::LegacySimulatorData
- reportTime
: Nbnxm::KernelBenchOptions
- reppow
: gmx_ffparams_t
- reproducible
: gmx::MdrunOptions
- repulsion_shift
: cl_nbparam_params
, NBParamGpu
- req
: gmx_pme_pp
- requests_
: gmx::SelectionOptionManager::Impl
- requiredAtoms_
: gmx::SelectionCollection::Impl
- requirementsBuilder_
: gmx::test::FlagTest
- requirePbcHandling
: gmx::test::TrajectoryFrameMatchSettings
- rerun
: gmx::MdrunOptions
- rerunConstructVsites
: gmx::MdrunOptions
- res_a_
: gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData
- reset_time_stamp
: gmx_walltime_accounting
- reset_time_stamp_per_thread
: gmx_walltime_accounting
- resetHalfway
: gmx::TimingOptions
- resetStep
: gmx::TimingOptions
- residueName
: BaseEntry
- residueNumberStart
: MoleculeBlockIndices
- residueTypeMap
: AtomProperties::Impl
- resname
: PreprocessResidue
, VirtualSiteTopology
- resno
: t_bb
- restartWithAppending
: gmx_enfrot
- restraint_
: gmx::RestraintManager::Impl
- reverseBoolean_
: gmx::OptionsAssigner::Impl
- rgb
: t_mapping
- rho_
: gmx::anonymous_namespace{neldermead.cpp}::NelderMeadParameters
- right
: t_methoddata_compare
- rij
: gmx::shakedata
- rlist
: NbnxnPairlistCpu
- rlistInner
: PairlistParams
, pme_setup_t
- rlistInner_sq
: NBParamGpu
, cl_nbparam_params
- rlistOuter
: pme_setup_t
, PairlistParams
- rlistOuter_sq
: NBParamGpu
, cl_nbparam_params
- rms_
: gmx::MrcDataStatistics
- rmsa
: t_bb
- rmsdev
: t_oriresdata
- rmsdReductionBuffer
: gmx::Lincs
- rng
: UmbrellaOptions
- rollingPrune_k
: Nbnxm::GpuTimers::Interaction
- rollingPruningNumParts
: Nbnxm::gpu_plist
- rollingPruningPart
: Nbnxm::gpu_plist
- root
: gmx_ana_selcollection_t
- rootChecker_
: gmx::test::MockAnalysisDataModule::Impl
- rootContext_
: gmx::HelpManager::Impl
- rootGroup_
: gmx::internal::OptionSectionImpl
- rootHelp
: gmx_ana_selcollection_t
- rootSection_
: gmx::internal::OptionsImpl
- rot
: gmx_enfrot
- rotationMatrix
: t_oriresdata
- rotg
: gmx_enfrotgrp
- rotmat
: gmx_enfrotgrp
, gmx_potfit
- rperm
: methoddata_permute
- rpost_
: gmx::SelectionCollection::Impl
- runMode
: PmeShared
- runner_
: gmx::test::MdrunTestFixture
, gmx::test::TerminationHelper
- runScheduleWork
: anonymous_namespace{minimize.cpp}::EnergyEvaluator
- runScheduleWork_
: gmx::LegacySimulatorData
, gmx::SimulatorConfig
- rv
: t_pargs
- rvdw_sq
: NBParamGpu
, cl_nbparam_params
- rvdw_switch
: NBParamGpu
, cl_nbparam_params
- rvecBuffer
: AtomDistribution