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src
gromacs
trajectoryanalysis
modules
modules → api Relation
File in src/gromacs/trajectoryanalysis/modules
Includes file in api
angle.cpp
legacy
/
include
/
gromacs
/
analysisdata
/
analysisdata.h
angle.cpp
legacy
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include
/
gromacs
/
trajectoryanalysis
/
analysissettings.h
angle.cpp
legacy
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include
/
gromacs
/
analysisdata
/
modules
/
average.h
angle.cpp
legacy
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include
/
gromacs
/
options
/
basicoptions.h
angle.cpp
legacy
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include
/
gromacs
/
utility
/
classhelpers.h
angle.cpp
legacy
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include
/
gromacs
/
utility
/
enumerationhelpers.h
angle.cpp
legacy
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include
/
gromacs
/
utility
/
exceptions.h
angle.cpp
legacy
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include
/
gromacs
/
options
/
filenameoption.h
angle.cpp
legacy
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include
/
gromacs
/
utility
/
gmxassert.h
angle.cpp
legacy
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include
/
gromacs
/
analysisdata
/
modules
/
histogram.h
angle.cpp
legacy
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include
/
gromacs
/
options
/
ioptionscontainer.h
angle.cpp
legacy
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include
/
gromacs
/
analysisdata
/
modules
/
plot.h
angle.cpp
legacy
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include
/
gromacs
/
selection
/
selection.h
angle.cpp
legacy
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include
/
gromacs
/
selection
/
selectionoption.h
angle.cpp
legacy
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include
/
gromacs
/
utility
/
stringutil.h
angle.h
legacy
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include
/
gromacs
/
trajectoryanalysis
/
analysismodule.h
convert_trj.cpp
legacy
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include
/
gromacs
/
trajectoryanalysis
/
analysissettings.h
convert_trj.cpp
legacy
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include
/
gromacs
/
options
/
filenameoption.h
convert_trj.cpp
legacy
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include
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gromacs
/
options
/
ioptionscontainer.h
convert_trj.cpp
legacy
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include
/
gromacs
/
selection
/
selectionoption.h
convert_trj.cpp
legacy
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include
/
gromacs
/
trajectoryanalysis
/
topologyinformation.h
convert_trj.h
legacy
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include
/
gromacs
/
trajectoryanalysis
/
analysismodule.h
distance.cpp
legacy
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include
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gromacs
/
analysisdata
/
analysisdata.h
distance.cpp
legacy
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include
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gromacs
/
trajectoryanalysis
/
analysissettings.h
distance.cpp
legacy
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include
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gromacs
/
analysisdata
/
modules
/
average.h
distance.cpp
legacy
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include
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gromacs
/
options
/
basicoptions.h
distance.cpp
legacy
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include
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gromacs
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utility
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exceptions.h
distance.cpp
legacy
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include
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gromacs
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options
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filenameoption.h
distance.cpp
legacy
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include
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gromacs
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analysisdata
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modules
/
histogram.h
distance.cpp
legacy
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include
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gromacs
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options
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ioptionscontainer.h
distance.cpp
legacy
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include
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gromacs
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analysisdata
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modules
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plot.h
distance.cpp
legacy
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include
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gromacs
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selection
/
selection.h
distance.cpp
legacy
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include
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gromacs
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selection
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selectionoption.h
distance.cpp
legacy
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include
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gromacs
/
utility
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stringutil.h
distance.h
legacy
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include
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gromacs
/
trajectoryanalysis
/
analysismodule.h
dssp.cpp
legacy
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include
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gromacs
/
analysisdata
/
analysisdata.h
dssp.cpp
legacy
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include
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gromacs
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trajectoryanalysis
/
analysissettings.h
dssp.cpp
legacy
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include
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gromacs
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options
/
basicoptions.h
dssp.cpp
legacy
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include
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gromacs
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utility
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exceptions.h
dssp.cpp
legacy
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include
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gromacs
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options
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filenameoption.h
dssp.cpp
legacy
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include
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gromacs
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utility
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gmxassert.h
dssp.cpp
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include
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gromacs
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options
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ioptionscontainer.h
dssp.cpp
legacy
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include
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gromacs
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selection
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nbsearch.h
dssp.cpp
legacy
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include
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gromacs
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analysisdata
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modules
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plot.h
dssp.cpp
legacy
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include
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gromacs
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selection
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selectionoption.h
dssp.cpp
legacy
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include
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gromacs
/
trajectoryanalysis
/
topologyinformation.h
dssp.h
legacy
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include
/
gromacs
/
trajectoryanalysis
/
analysismodule.h
extract_cluster.cpp
legacy
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include
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gromacs
/
trajectoryanalysis
/
analysissettings.h
extract_cluster.cpp
legacy
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include
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gromacs
/
options
/
filenameoption.h
extract_cluster.cpp
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include
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gromacs
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options
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ioptionscontainer.h
extract_cluster.cpp
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include
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gromacs
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selection
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selectionoption.h
extract_cluster.cpp
legacy
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include
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gromacs
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utility
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stringutil.h
extract_cluster.cpp
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include
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gromacs
/
trajectoryanalysis
/
topologyinformation.h
extract_cluster.h
legacy
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include
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gromacs
/
trajectoryanalysis
/
analysismodule.h
freevolume.cpp
legacy
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include
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gromacs
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analysisdata
/
analysisdata.h
freevolume.cpp
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include
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gromacs
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trajectoryanalysis
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analysissettings.h
freevolume.cpp
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include
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gromacs
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utility
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arrayref.h
freevolume.cpp
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include
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gromacs
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analysisdata
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modules
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average.h
freevolume.cpp
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include
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gromacs
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options
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basicoptions.h
freevolume.cpp
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include
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gromacs
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options
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filenameoption.h
freevolume.cpp
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include
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gromacs
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math
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functions.h
freevolume.cpp
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include
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gromacs
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options
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ioptionscontainer.h
freevolume.cpp
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include
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gromacs
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selection
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nbsearch.h
freevolume.cpp
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include
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gromacs
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analysisdata
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modules
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plot.h
freevolume.cpp
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include
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gromacs
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selection
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selection.h
freevolume.cpp
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include
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gromacs
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selection
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selectionoption.h
freevolume.cpp
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include
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gromacs
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trajectoryanalysis
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topologyinformation.h
freevolume.h
legacy
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include
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gromacs
/
trajectoryanalysis
/
analysismodule.h
gyrate.cpp
legacy
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include
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gromacs
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analysisdata
/
analysisdata.h
gyrate.cpp
legacy
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include
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gromacs
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trajectoryanalysis
/
analysismodule.h
gyrate.cpp
legacy
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include
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gromacs
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trajectoryanalysis
/
analysissettings.h
gyrate.cpp
legacy
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include
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gromacs
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analysisdata
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modules
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average.h
gyrate.cpp
legacy
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include
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gromacs
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options
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basicoptions.h
gyrate.cpp
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include
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gromacs
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options
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filenameoption.h
gyrate.cpp
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include
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gromacs
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options
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ioptionscontainer.h
gyrate.cpp
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include
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gromacs
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analysisdata
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modules
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plot.h
gyrate.cpp
legacy
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include
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gromacs
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selection
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selection.h
gyrate.cpp
legacy
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include
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gromacs
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selection
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selectionoption.h
gyrate.cpp
legacy
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include
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gromacs
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trajectoryanalysis
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topologyinformation.h
gyrate.h
legacy
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include
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gromacs
/
trajectoryanalysis
/
analysismodule.h
hbond.cpp
legacy
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include
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gromacs
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analysisdata
/
analysisdata.h
hbond.cpp
legacy
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include
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gromacs
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trajectoryanalysis
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analysissettings.h
hbond.cpp
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include
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gromacs
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options
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basicoptions.h
hbond.cpp
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include
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gromacs
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options
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filenameoption.h
hbond.cpp
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include
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gromacs
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utility
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futil.h
hbond.cpp
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include
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gromacs
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utility
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gmxassert.h
hbond.cpp
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include
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gromacs
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analysisdata
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modules
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histogram.h
hbond.cpp
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include
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gromacs
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selection
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nbsearch.h
hbond.cpp
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include
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gromacs
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options
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options.h
hbond.cpp
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include
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gromacs
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analysisdata
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modules
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plot.h
hbond.cpp
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include
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gromacs
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selection
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selectionoption.h
hbond.cpp
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include
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gromacs
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trajectoryanalysis
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topologyinformation.h
hbond.h
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include
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gromacs
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trajectoryanalysis
/
analysismodule.h
isotope.cpp
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include
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gromacs
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utility
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exceptions.h
isotope.cpp
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include
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gromacs
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utility
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stringutil.h
msd.cpp
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include
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gromacs
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analysisdata
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analysisdata.h
msd.cpp
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include
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gromacs
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trajectoryanalysis
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analysissettings.h
msd.cpp
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include
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gromacs
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analysisdata
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modules
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average.h
msd.cpp
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include
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gromacs
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options
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basicoptions.h
msd.cpp
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include
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gromacs
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utility
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exceptions.h
msd.cpp
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include
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gromacs
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options
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filenameoption.h
msd.cpp
legacy
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include
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gromacs
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math
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functions.h
msd.cpp
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include
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gromacs
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options
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ioptionscontainer.h
msd.cpp
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include
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gromacs
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analysisdata
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modules
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plot.h
msd.cpp
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include
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gromacs
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selection
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selectionoption.h
msd.cpp
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include
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gromacs
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utility
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stringutil.h
msd.cpp
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include
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gromacs
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trajectoryanalysis
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topologyinformation.h
msd.h
legacy
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include
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gromacs
/
trajectoryanalysis
/
analysismodule.h
pairdist.cpp
legacy
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include
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gromacs
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analysisdata
/
analysisdata.h
pairdist.cpp
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include
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gromacs
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trajectoryanalysis
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analysissettings.h
pairdist.cpp
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include
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gromacs
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options
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basicoptions.h
pairdist.cpp
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include
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gromacs
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utility
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exceptions.h
pairdist.cpp
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include
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gromacs
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options
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filenameoption.h
pairdist.cpp
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include
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gromacs
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options
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ioptionscontainer.h
pairdist.cpp
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include
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gromacs
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selection
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nbsearch.h
pairdist.cpp
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include
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gromacs
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analysisdata
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modules
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plot.h
pairdist.cpp
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include
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gromacs
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selection
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selection.h
pairdist.cpp
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include
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gromacs
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selection
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selectionoption.h
pairdist.cpp
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include
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gromacs
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trajectoryanalysis
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topologyinformation.h
pairdist.h
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include
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gromacs
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trajectoryanalysis
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analysismodule.h
rdf.cpp
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include
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gromacs
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analysisdata
/
analysisdata.h
rdf.cpp
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include
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gromacs
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trajectoryanalysis
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analysismodule.h
rdf.cpp
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include
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gromacs
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trajectoryanalysis
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analysissettings.h
rdf.cpp
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include
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gromacs
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analysisdata
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modules
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average.h
rdf.cpp
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include
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gromacs
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options
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basicoptions.h
rdf.cpp
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include
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gromacs
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utility
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exceptions.h
rdf.cpp
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include
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gromacs
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options
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filenameoption.h
rdf.cpp
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include
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gromacs
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math
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functions.h
rdf.cpp
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include
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gromacs
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analysisdata
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modules
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histogram.h
rdf.cpp
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include
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gromacs
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options
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ioptionscontainer.h
rdf.cpp
legacy
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include
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gromacs
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selection
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nbsearch.h
rdf.cpp
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include
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gromacs
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analysisdata
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modules
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plot.h
rdf.cpp
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include
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gromacs
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selection
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selection.h
rdf.cpp
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include
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gromacs
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selection
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selectionoption.h
rdf.cpp
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include
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gromacs
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utility
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stringutil.h
rdf.cpp
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include
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gromacs
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trajectoryanalysis
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topologyinformation.h
rdf.h
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include
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gromacs
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trajectoryanalysis
/
analysismodule.h
sasa.cpp
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include
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gromacs
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analysisdata
/
analysisdata.h
sasa.cpp
legacy
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include
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gromacs
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trajectoryanalysis
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analysismodule.h
sasa.cpp
legacy
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include
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gromacs
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trajectoryanalysis
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analysissettings.h
sasa.cpp
legacy
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include
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gromacs
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analysisdata
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modules
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average.h
sasa.cpp
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include
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gromacs
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options
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basicoptions.h
sasa.cpp
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include
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gromacs
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utility
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exceptions.h
sasa.cpp
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include
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gromacs
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options
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filenameoption.h
sasa.cpp
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include
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gromacs
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utility
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futil.h
sasa.cpp
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gromacs
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options
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ioptionscontainer.h
sasa.cpp
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include
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gromacs
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analysisdata
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modules
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plot.h
sasa.cpp
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include
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gromacs
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selection
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selection.h
sasa.cpp
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include
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gromacs
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selection
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selectionoption.h
sasa.cpp
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include
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gromacs
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utility
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smalloc.h
sasa.cpp
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include
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gromacs
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utility
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stringutil.h
sasa.cpp
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include
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gromacs
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topology
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symtab.h
sasa.cpp
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include
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gromacs
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trajectoryanalysis
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topologyinformation.h
sasa.cpp
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include
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gromacs
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utility
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unique_cptr.h
sasa.h
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include
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gromacs
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trajectoryanalysis
/
analysismodule.h
scattering-debye-sans.h
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include
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gromacs
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selection
/
selection.h
scattering-debye-saxs.h
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include
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gromacs
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selection
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selection.h
scattering-debye.h
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include
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gromacs
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selection
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selection.h
scattering.cpp
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include
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gromacs
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analysisdata
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analysisdata.h
scattering.cpp
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include
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gromacs
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trajectoryanalysis
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analysissettings.h
scattering.cpp
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include
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gromacs
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analysisdata
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modules
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average.h
scattering.cpp
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gromacs
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options
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basicoptions.h
scattering.cpp
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gromacs
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utility
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exceptions.h
scattering.cpp
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gromacs
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options
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filenameoption.h
scattering.cpp
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gromacs
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utility
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gmxassert.h
scattering.cpp
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gromacs
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options
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ioptionscontainer.h
scattering.cpp
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gromacs
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analysisdata
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modules
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plot.h
scattering.cpp
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include
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gromacs
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selection
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selection.h
scattering.cpp
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include
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gromacs
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selection
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selectionoption.h
scattering.cpp
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include
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gromacs
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trajectoryanalysis
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topologyinformation.h
scattering.h
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include
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gromacs
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trajectoryanalysis
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analysismodule.h
scatteringfactors.cpp
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include
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gromacs
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utility
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futil.h
select.cpp
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include
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gromacs
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analysisdata
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analysisdata.h
select.cpp
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include
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gromacs
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trajectoryanalysis
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analysissettings.h
select.cpp
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gromacs
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utility
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arrayref.h
select.cpp
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gromacs
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analysisdata
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modules
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average.h
select.cpp
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include
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gromacs
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options
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basicoptions.h
select.cpp
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include
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gromacs
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analysisdata
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dataframe.h
select.cpp
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include
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gromacs
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analysisdata
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datamodule.h
select.cpp
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include
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gromacs
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options
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filenameoption.h
select.cpp
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include
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gromacs
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utility
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gmxassert.h
select.cpp
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include
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gromacs
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options
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ioptionscontainer.h
select.cpp
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include
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gromacs
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analysisdata
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modules
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lifetime.h
select.cpp
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include
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gromacs
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analysisdata
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modules
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plot.h
select.cpp
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include
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gromacs
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selection
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selection.h
select.cpp
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include
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gromacs
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selection
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selectionoption.h
select.cpp
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include
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gromacs
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utility
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smalloc.h
select.cpp
legacy
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include
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gromacs
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utility
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stringutil.h
select.cpp
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include
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gromacs
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trajectoryanalysis
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topologyinformation.h
select.h
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include
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gromacs
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trajectoryanalysis
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analysismodule.h
surfacearea.cpp
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include
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gromacs
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math
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functions.h
surfacearea.cpp
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include
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gromacs
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utility
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gmxassert.h
surfacearea.cpp
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include
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gromacs
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selection
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nbsearch.h
surfacearea.cpp
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include
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gromacs
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utility
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smalloc.h
surfacearea.h
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include
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gromacs
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utility
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arrayref.h
surfacearea.h
legacy
/
include
/
gromacs
/
utility
/
real.h
trajectory.cpp
legacy
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include
/
gromacs
/
analysisdata
/
analysisdata.h
trajectory.cpp
legacy
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include
/
gromacs
/
trajectoryanalysis
/
analysissettings.h
trajectory.cpp
legacy
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include
/
gromacs
/
options
/
basicoptions.h
trajectory.cpp
legacy
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include
/
gromacs
/
options
/
filenameoption.h
trajectory.cpp
legacy
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include
/
gromacs
/
options
/
ioptionscontainer.h
trajectory.cpp
legacy
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include
/
gromacs
/
analysisdata
/
modules
/
plot.h
trajectory.cpp
legacy
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include
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gromacs
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selection
/
selection.h
trajectory.cpp
legacy
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include
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gromacs
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selection
/
selectionoption.h
trajectory.h
legacy
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include
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gromacs
/
trajectoryanalysis
/
analysismodule.h
unionfind.h
legacy
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include
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gromacs
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utility
/
arrayref.h
unionfind.h
legacy
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include
/
gromacs
/
utility
/
gmxassert.h
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