Here is a list of all documented class members with links to the class documentation for each member:

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• sampleCount() : gmx::AnalysisDataAverageModule
• scaleAll() : gmx::AbstractAverageHistogram
• scaleAllByVector() : gmx::AbstractAverageHistogram
• scaleSingle() : gmx::AbstractAverageHistogram
• sci : nbnxn_sci
• SearchMode : gmx::AnalysisNeighborhood
• seed() : gmx::ThreeFry2x64General< rounds, internalCounterBits >
• selectDataSet() : gmx::AnalysisDataHandle
• selected() : gmx::SelectionPosition
• Selection() : gmx::Selection
• selection() : gmx::SelectionCollection
• selectionCollection() : gmx::AnalysisDataPlotSettings
• SelectionCollection() : gmx::SelectionCollection
• SelectionOption() : gmx::SelectionOption
• SelectionOptionBehavior() : gmx::SelectionOptionBehavior
• SelectionOptionInfo() : gmx::SelectionOptionInfo
• SelectionOptionManager() : gmx::SelectionOptionManager
• SelectionPosition() : gmx::SelectionPosition
• selectionText() : gmx::Selection
• SelectionTopologyProperties() : gmx::SelectionTopologyProperties
• SelectionTypeOption : gmx::SelectionCollection
• selectSingleFromArray() : gmx::AnalysisNeighborhoodPositions
• selfEnergy() : gmx::CoulombCalculator< KernelCoulombType::RF > , gmx::CoulombCalculator< KernelCoulombType::EwaldAnalytical > , gmx::CoulombCalculator< KernelCoulombType::EwaldTabulated >
• serialize() : StringTableEntry
• serializeParticle() : SimulationParticle
• serializeStringTable() : StringTable
• set : gmx::SimulationSignal , gmx::FlagsTemplate< FlagType >
• setAtomProperty() : AtomProperties
• SetAtoms() : gmx::SetAtoms
• setAverageDataSets() : gmx::AnalysisDataAverageModule
• SetBox() : gmx::SetBox
• setBugText() : gmx::ICommandLineOptionsModuleSettings
• setColumnCount() : gmx::AnalysisData , gmx::AbstractAnalysisArrayData
• setContinuationChar() : gmx::TextLineWrapperSettings
• setCumulative() : gmx::AnalysisDataLifetimeModule
• setCutoff() : gmx::AnalysisNeighborhood
• setDataSetCount() : gmx::AnalysisData
• setDebugLevel() : gmx::SelectionCollection
• setDefaultNiceLevel() : gmx::CommandLineModuleSettings
• setDynamicMask() : gmx::SelectionOptionInfo
• setError() : gmx::AnalysisDataValue
• setErrorsAsSeparateColumn() : gmx::AbstractPlotModule
• setEvaluateForces() : gmx::Selection , gmx::SelectionOptionInfo
• setEvaluateVelocities() : gmx::Selection , gmx::SelectionOptionInfo
• setFileAndLineNumber() : WarningHandler
• setFileName() : gmx::AbstractPlotModule
• setFirstLineIndent() : gmx::TextLineWrapperSettings
• setFlag() : gmx::TrajectoryAnalysisSettings
• setFlags() : t_state , gmx::TrajectoryAnalysisSettings
• SetForces() : gmx::SetForces
• setFrameFlags() : gmx::TrajectoryAnalysisSettings
• setHelpText() : gmx::CommandLineHelpWriter , gmx::ICommandLineOptionsModuleSettings , gmx::TrajectoryAnalysisSettings
• setIndent() : gmx::TextLineWrapperSettings
• setIndexGroups() : gmx::SelectionCollection
• setInfo() : gmx::GromacsException
• setInputRedirector() : gmx::FileNameOptionManager
• setKeepFinalSpaces() : gmx::TextLineWrapperSettings
• setKnownIssues() : gmx::CommandLineHelpWriter
• setLegend() : gmx::AbstractPlotModule
• setLineLength() : gmx::TextLineWrapperSettings
• setLocalAtomOrder() : PairSearch
• setMaxTime() : gmx::AnalysisDataDisplacementModule
• setMode() : gmx::AnalysisNeighborhood
• setMSDHistogram() : gmx::AnalysisDataDisplacementModule
• setMultipoint() : gmx::AnalysisData
• setOmitX() : gmx::AbstractPlotModule
• setOnlyAtoms() : gmx::SelectionOptionInfo
• setOnlyStatic() : gmx::SelectionOptionInfo
• setOptionsModuleSettings() : gmx::TrajectoryAnalysisSettings
• setOriginalId() : gmx::Selection
• setOutputPosType() : gmx::SelectionCollection
• setPBC() : gmx::TrajectoryAnalysisSettings
• setPlainOutput() : gmx::AbstractPlotModule
• setPoint() : gmx::AnalysisDataHandle
• setPoints() : gmx::AnalysisDataHandle
• SetPrecision() : gmx::SetPrecision
• setReferencePosType() : gmx::SelectionCollection
• setRmPBC() : gmx::TrajectoryAnalysisSettings
• setRowCount() : gmx::AbstractAnalysisArrayData
• setScaleFactor() : gmx::DoubleOptionInfo , gmx::FloatOptionInfo
• setSearchPathFromEnv() : gmx::DataFileFinder
• setSelectionCollection() : gmx::AnalysisDataPlotSettings
• setSettings() : gmx::AbstractPlotModule
• setSignals() : gmx::SimulationSignaller
• SetStartTime() : gmx::SetStartTime
• setSubtitle() : gmx::AbstractPlotModule
• SetTimeStep() : gmx::SetTimeStep
• setTimeUnit() : gmx::AnalysisDataPlotSettings , gmx::TimeUnitManager , gmx::TimeUnitBehavior
• setTimeUnitFromEnvironment() : gmx::TimeUnitBehavior
• setTimeUnitStore() : gmx::TimeUnitBehavior
• settings() : gmx::AnalysisDataWeightedHistogramModule , gmx::AbstractAverageHistogram , gmx::AnalysisDataSimpleHistogramModule , gmx::AnalysisDataBinAverageModule , gmx::TextLineWrapper
• setTitle() : gmx::AbstractPlotModule
• setTopology() : gmx::SelectionCollection
• setTopologyExclusions() : gmx::AnalysisNeighborhood
• setValue() : gmx::AnalysisDataValue
• setValueCount() : gmx::SelectionOptionInfo
• SetVelocities() : gmx::SetVelocities
• setWriteMask() : gmx::AnalysisDataVectorPlotModule
• setWriteNorm() : gmx::AnalysisDataVectorPlotModule
• setWriteX() : gmx::AnalysisDataVectorPlotModule
• setWriteY() : gmx::AnalysisDataVectorPlotModule
• setWriteZ() : gmx::AnalysisDataVectorPlotModule
• setXAxis() : gmx::AbstractAnalysisArrayData
• setXAxisIsTime() : gmx::AbstractPlotModule
• setXAxisValue() : gmx::AbstractAnalysisArrayData
• setXFormat() : gmx::AbstractPlotModule
• setXLabel() : gmx::AbstractPlotModule
• setXYMode() : gmx::AnalysisNeighborhood
• setYFormat() : gmx::AbstractPlotModule
• setYLabel() : gmx::AbstractPlotModule
• shift : nbnxn_sci
• shiftForces() : ForceHelperBuffers
• shortDescription : gmx::ConvertTprInfo , gmx::NonbondedBenchmarkInfo , gmx::ICommandLineModule
• sig : gmx::SimulationSignal
• sigma3A : t_mdatoms
• sigma3B : t_mdatoms
• sigmaA : t_mdatoms
• sigmaB : t_mdatoms
• signalInterSim() : gmx::SimulationSignaller
• signFactor_ : AtomsAdjacencyListElement
• simulation_part : CheckpointHeaderContents
• SimulationAlgorithmSetupError() : gmx::SimulationAlgorithmSetupError
• SimulationInstabilityError() : gmx::SimulationInstabilityError
• SimulationParticle() : SimulationParticle
• SimulationSignal() : gmx::SimulationSignal
• SimulationSignaller() : gmx::SimulationSignaller
• SimulatorConfig() : gmx::SimulatorConfig
• SimulatorEnv() : gmx::SimulatorEnv
• SimulatorStateData() : gmx::SimulatorStateData
• sites() : gmx::IRestraintPotential
• size() : gmx::ArrayRefWithPadding< typename > , JClusterList , gmx::ListOfLists< typename > , gmx::Range< typename > , gmx::PaddedVector< T, Allocator > , gmx::FixedCapacityVector< typename, size_t > , gmx::ArrayRef< typename > , PackedJClusterList
• size_type : gmx::ArrayRefWithPadding< typename > , gmx::ArrayRef< typename > , gmx::FixedCapacityVector< typename, size_t >
• skipRemainingPairsForTestPosition() : gmx::AnalysisNeighborhoodPairSearch
• skipUnknown() : gmx::CommandLineParser
• sortBuffer : PairsearchWork
• sourceLayoutTreeLike_ : gmx::InstallationPrefixInfo
• sqrt_c6A : t_mdatoms
• sqrt_c6B : t_mdatoms
• ssize() : gmx::ArrayRef< typename > , gmx::FixedCapacityVector< typename, size_t > , gmx::ListOfLists< typename >
• standardDeviation() : gmx::AnalysisDataAverageModule
• start() : nbnxn_cycle_t , gmx::AnalysisHistogramSettingsInitializer , wallcc_t
• startData() : gmx::AnalysisData
• startFrame() : gmx::AnalysisDataHandle
• startFrames() : gmx::TrajectoryAnalysisModule
• startingBehavior_ : gmx::SimulatorConfig
• startPairSearch() : gmx::AnalysisNeighborhoodSearch
• startSelfPairSearch() : gmx::AnalysisNeighborhoodSearch
• startTimeValue : gmx::OutputRequirements
• stddev() : gmx::TabulatedNormalDistribution< RealType, tableBits >::param_type , gmx::NormalDistribution< RealType > , gmx::TabulatedNormalDistribution< RealType, tableBits > , gmx::NormalDistribution< RealType >::param_type
• step : CheckpointHeaderContents
• stepFactor : gmx::MtsLevel
• stop() : nbnxn_cycle_t
• store() : gmx::OptionTemplate< T, U >
• storeCount() : gmx::OptionTemplate< T, U >
• storeIsSet() : gmx::OptionTemplate< T, U >
• storeVector() : gmx::RepeatingOptionSection< T > , gmx::OptionTemplate< T, U >
• StringFormatter() : gmx::StringFormatter
• StringOption() : gmx::StringOption
• StringOptionInfo() : gmx::StringOptionInfo
• StringTable() : StringTable
• StringTableEntry() : StringTableEntry
• subArray() : gmx::ArrayRef< typename >
• sum_dg : df_history_t
• sum_minvar : df_history_t
• sum_variance : df_history_t
• sum_weights : df_history_t
• svir_prev : t_state
• swap() : gmx::ArrayRefWithPadding< typename > , gmx::ArrayRef< typename > , gmx::PaddedVector< T, Allocator >