| DomDecHelper (gmx) | MockAnalysisDataModule::Impl (gmx::test) | nbnxn_atomdata_t | SetTimeStep (gmx) |
DomDecHelperBuilder (gmx) | SelectionParserSymbolTable::Impl (gmx) | nbnxn_ci_t | SetTimeStepTest (gmx::test) |
AbstractAnalysisArrayData (gmx) | DomdecOptions (gmx) | SelectionParserSymbolIterator::Impl (gmx) | nbnxn_cj_packed_t | SettleData (gmx) |
AbstractAnalysisData (gmx) | DomDecSpecialCasesTest (anonymous_namespace{domain_decomposition.cpp}) | SelectionParserSymbol::Impl (gmx) | nbnxn_cj_t | SettleGpu (gmx) |
AbstractAverageHistogram (gmx) | DoubleOption (gmx) | SelectionOptionManager::Impl (gmx) | nbnxn_cycle_t | SettleTest (gmx::test::anonymous_namespace{settle.cpp}) |
AbstractCompositeHelpTopic (gmx) | DoubleOptionInfo (gmx) | SelectionCollection::Impl (gmx) | nbnxn_excl_t | SettleTestParameters (gmx::test::anonymous_namespace{settle.cpp}) |
AbstractOption (gmx) | DoubleOptionStorage (gmx) | RestraintManager::Impl (gmx) | nbnxn_im_ei_t | SettleWaterTopology |
AbstractOptionSection (gmx) | DsspModuleTest (gmx::test::anonymous_namespace{dssp.cpp}) | PositionCalculationCollection::Impl (gmx) | nbnxn_sci | SetVelocities (gmx) |
AbstractOptionSectionHandle (gmx) | DsspStorage (gmx::analysismodules::anonymous_namespace{dssp.cpp}) | PmePpCommGpu::Impl (gmx) | NbnxnPairlistCpu | SetVelocitySupportedFiles (gmx::test) |
AbstractOptionStorage (gmx) | DsspStorageFrame (gmx::analysismodules::anonymous_namespace{dssp.cpp}) | PmeForceSenderGpu::Impl (gmx) | NbnxnPairlistCpuWork | SetVelocityUnSupportedFiles (gmx::test) |
AbstractPlotModule (gmx) |
| PmeCoordinateReceiverGpu::Impl (gmx) | NBParamGpu | shakedata (gmx) |
AbstractSimpleHelpTopic (gmx) | OptionsAssigner::Impl (gmx) | NBStagingData | ShakeTest (gmx::anonymous_namespace{shake.cpp}) |
AbstractTrajectoryAnalysisModuleTestFixture (gmx::test) | EdrOutputFilename (gmx) | ObservablesReducerBuilder::Impl (gmx) | NeighborSearchSignaller (gmx) | GaussianSpreadKernelParameters::Shape (gmx) |
accessor_basic (gmx) | ekinstate_t | ObservablesReducer::Impl (gmx) | NelderMeadParameters (gmx::anonymous_namespace{neldermead.cpp}) | HelpWriterContext::Impl::SharedState (gmx) |
AffineTransformation (gmx) | ElectricField (gmx::anonymous_namespace{electricfield.cpp}) | MrcDensityMapOfFloatWriter::Impl (gmx) | NelderMeadSimplex (gmx) | SignallerBuilder (gmx) |
KeyValueTreeTransformRuleBuilder::AfterFrom (gmx) | ElectricFieldDimension (gmx::anonymous_namespace{electricfield.cpp}) | MrcDensityMapOfFloatReader::Impl (gmx) | no_delete (gmx) | SignalTest (gmx::test) |
AlignedAllocationPolicy (gmx) | StatePropagatorData::Element (gmx) | MdGpuGraph::Impl (gmx) | BuildMDModulesNotifier<>::NoCallParameter (gmx) | Simd4DBool (gmx) |
AlignedArray< double, N > (gmx) | FreeEnergyPerturbationData::Element (gmx) | LocalTopologyChecker::Impl (gmx) | NoContentsMatch (gmx::test) | Simd4Double (gmx) |
AlignedArray< float, N > (gmx) | EnergyData::Element (gmx) | LocalAtomSetManager::Impl (gmx) | nonbonded_verlet_t | Simd4FBool (gmx) |
Allocator (gmx) | ElementNotFoundError (gmx) | ListedForcesGpu::Impl (gmx) | NonbondedBenchmarkInfo (gmx) | Simd4Float (gmx) |
AllocatorTest (gmx::test) | em_state | ImdSession::Impl (gmx) | NoOptionalOutput (gmx::test) | SimdArrayRef (gmx::internal) |
AllowAnyRankCount (gmx::test) | EnergyAccumulator (gmx) | HelpWriterContext::Impl (gmx) | NormalDistribution (gmx) | SimdBaseTest (gmx::test) |
AllVsiteBondedInteractions | EnergyAccumulator< false, true > (gmx) | HelpManager::Impl (gmx) | NormalModesTest (gmx::test::anonymous_namespace{normalmodes.cpp}) | SimdDBool (gmx) |
AmdPackedFloat3 | EnergyAccumulator< true, true > (gmx) | HelpLinks::Impl (gmx) | NoseHooverChainsData (gmx) | SimdDIBool (gmx) |
AnalysisArrayData (gmx) | EnergyAccumulator< useEnergyGroups, false > (gmx) | GpuHaloExchange::Impl (gmx) | NoseHooverChainsElement (gmx) | SimdDInt32 (gmx) |
AnalysisData (gmx) | EnergyAccumulatorGetter (gmx::anonymous_namespace{simd_kernel.h}) | Gpu3dFft::ImplSyclVkfft::Impl (gmx) | NoseHooverGroup (gmx) | SimdDInt32Tag (gmx) |
AnalysisDataAverageModule (gmx) | EnergyAccumulatorGetter< false, false > (gmx::anonymous_namespace{simd_kernel.h}) | Gpu3dFft::ImplSyclRocfft::Impl (gmx) | NoseHooverTemperatureCoupling (gmx) | SimdDouble (gmx) |
AnalysisDataBinAverageModule (gmx) | EnergyAccumulatorGetter< false, true > (gmx::anonymous_namespace{simd_kernel.h}) | Gpu3dFft::ImplOclVkfft::Impl (gmx) | not_null (gmx::compat) | SimdDoubleTag (gmx) |
AnalysisDataDisplacementModule (gmx) | EnergyAccumulatorGetter< true, true > (gmx::anonymous_namespace{simd_kernel.h}) | Gpu3dFft::Impl (gmx) | NoTextMatch (gmx::test) | SimdFBool (gmx) |
AnalysisDataFrameAverageModule (gmx) | EnergyAnalysisFrame (gmx) | GaussTransform3D::Impl (gmx) | NotImplementedError (gmx) | SimdFIBool (gmx) |
AnalysisDataFrameAverager (gmx) | EnergyCalculationFrequencyErrors (gmx) | FileNameOptionManager::Impl (gmx) | HardwareTopology::Numa (gmx) | SimdFInt32 (gmx) |
AnalysisDataFrameHeader (gmx) | EnergyComparison (gmx::test) | DomainDecompositionBuilder::Impl (gmx) | HardwareTopology::NumaNode (gmx) | SimdFInt32Tag (gmx) |
AnalysisDataFrameLocalData (gmx) | EnergyData (gmx) | DeviceStreamManager::Impl (gmx) | NumericalSplineTableInput (gmx) | SimdFloat (gmx) |
AnalysisDataFrameLocalDataHandle (gmx) | EnergyDriftTracker (gmx) | DensityFittingForce::Impl (gmx) | NumPmeDomains | SimdFloatTag (gmx) |
AnalysisDataFrameLocalDataSetHandle (gmx) | EnergyEvaluator (anonymous_namespace{minimize.cpp}) | CommandLineParser::Impl (gmx) | NumRanksPerSimulation (gmx::test) | nbnxn_atomdata_t::SimdMasks |
AnalysisDataFrameRef (gmx) | EnergyFrame (gmx) | CommandLineModuleManager::Impl (gmx) |
| SimdSetZeroProxy (gmx) |
AnalysisDataHandle (gmx) | EnergyFrameReader (gmx::test) | CommandLineHelpWriter::Impl (gmx) | SimdTraits (gmx::internal) |
AnalysisDataHandleImpl (gmx::internal) | EnergyFunctionProperties (Nbnxm) | CommandLineHelpContext::Impl (gmx) | ObservablesHistory | SimpleHelpTopic (gmx) |
AnalysisDataLifetimeModule (gmx) | EnergyGroupsPerCluster (gmx) | AnalysisDataWeightedHistogramModule::Impl (gmx) | ObservablesReducer (gmx) | SimpleMdrunTest (gmx::test::anonymous_namespace{simple_mdrun.cpp}) |
AnalysisDataModuleManager (gmx) | EnergyMinimizationTest (gmx::test::anonymous_namespace{minimize.cpp}) | AnalysisDataSimpleHistogramModule::Impl (gmx) | ObservablesReducerBuilder (gmx) | SimulationAlgorithmSetupError (gmx) |
AnalysisDataModuleParallel (gmx) | EnergyNameUnit (gmx) | AnalysisDataModuleManager::Impl (gmx) | ObservablesReducerIntegrationTest (gmx::test::anonymous_namespace{observablesreducer.cpp}) | SimulationContext (gmx) |
AnalysisDataModuleSerial (gmx) | EnergyOutputTest (gmx::test::anonymous_namespace{energyoutput.cpp}) | AnalysisDataLifetimeModule::Impl (gmx) | ObsoleteToolModule (anonymous_namespace{legacymodules.cpp}) | SimulationGroups |
AnalysisDataParallelOptions (gmx) | EnergyOutputTestParameters (gmx::test::anonymous_namespace{energyoutput.cpp}) | AnalysisDataDisplacementModule::Impl (gmx) | Offset (gmx) | SimulationInputHandle (gmx) |
AnalysisDataPlotModule (gmx) | EnergySignaller (gmx) | AnalysisData::Impl (gmx) | omp_module_nthreads_t | SimulationInputHandleImplDeleter (gmx::detail) |
AnalysisDataPlotSettings (gmx) | EnergyTerm (gmx) | AbstractCompositeHelpTopic::Impl (gmx) | OpenClTraits (gmx) | SimulationInstabilityError (gmx) |
AnalysisDataPointSetRef (gmx) | EnsembleTemperature (gmx) | AbstractAnalysisData::Impl (gmx) | OpenClTraits< cl_command_queue > (gmx) | SimulationParticle |
AnalysisDataProxy (gmx) | gmx_ga2la_t::Entry | ExclusionChecker::Impl | OpenClTraits< cl_context > (gmx) | SimulationRunner (gmx::test) |
AnalysisDataSimpleHistogramModule (gmx) | EnumerationArray (gmx) | BalanceRegion::Impl | OpenClTraits< cl_kernel > (gmx) | SimulationSignal (gmx) |
AnalysisDataStorage (gmx) | EnumerationIterator (gmx) | AtomProperties::Impl | OpenClTraits< cl_program > (gmx) | SimulationSignaller (gmx) |
AnalysisDataStorageFrame (gmx) | EnumerationWrapper (gmx) | Gpu3dFft::ImplCuFft (gmx) | OpenClTraitsBase (gmx) | SimulationTimeStep (gmx) |
AnalysisDataStorageFrameData (gmx::internal) | EnumIndexStore (gmx::internal) | Gpu3dFft::ImplCuFftMp (gmx) | OptimisationResult (gmx) | SimulationWorkload (gmx) |
AnalysisDataStorageImpl (gmx::internal) | EnumOption (gmx) | Gpu3dFft::ImplOcl (gmx) | OptionInfo (gmx) | SimulatorBuilder (gmx) |
AnalysisDataTestFixture (gmx::test) | EnumOptionInfo (gmx) | Gpu3dFft::ImplOclVkfft (gmx) | OptionManagerContainer (gmx) | SimulatorConfig (gmx) |
AnalysisDataTestInput (gmx::test) | EnumOptionStorage (gmx) | Gpu3dFft::ImplSycl (gmx) | Options (gmx) | SimulatorEnv (gmx) |
AnalysisDataTestInputFrame (gmx::test) | EqualCaseInsensitive (gmx) | Gpu3dFft::ImplSyclBbfft (gmx) | OptionsAdapter (gmx::anonymous_namespace{pargs.cpp}) | SimulatorStateData (gmx) |
AnalysisDataTestInputPointSet (gmx::test) | ErrorMessage (gmx::anonymous_namespace{exceptions.cpp}) | Gpu3dFft::ImplSyclMkl (gmx) | OptionsAssigner (gmx) | SingleRankChecker (anonymous_namespace{resourcedivision.cpp}) |
AnalysisDataValue (gmx) | EwaldBoxZScaler | Gpu3dFft::ImplSyclRocfft (gmx) | OptionsBehaviorCollection (gmx) | Site (gmx) |
AnalysisDataVectorPlotModule (gmx) | EwaldSurfaceTermTest (gmx::test::anonymous_namespace{ewaldsurfaceterm.cpp}) | Gpu3dFft::ImplSyclVkfft (gmx) | OptionSection (gmx) | SolveKernelParams |
AnalysisDataWeightedHistogramModule (gmx) | ExactTextMatch (gmx::test) | InconsistentInputError (gmx) | OptionSectionHandle (gmx) | SolveTest (gmx::test::anonymous_namespace{pmesolvetest.cpp}) |
AnalysisHistogramSettings (gmx) | ExceptionInfo (gmx) | IndexBlockTest (anonymous_namespace{indexutil.cpp}) | OptionSectionImpl (gmx::internal) | SolveTestBody (gmx::test::anonymous_namespace{pmesolvetest.cpp}) |
AnalysisHistogramSettingsInitializer (gmx) | ExceptionInitializer (gmx) | IndexFileWriterModule (gmx::analysismodules::anonymous_namespace{select.cpp}) | OptionsFilter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp}) | sort_along_vec_t |
AnalysisNeighborhood (gmx) | ExclusionBlock (gmx) | IndexGroup | OptionsImpl (gmx::internal) | spheresurfacebin |
AnalysisNeighborhoodPair (gmx) | ExpandedEnsembleElement (gmx) | IndexGroupsAndNames (gmx) | OptionsIterator (gmx) | SplineAndSpreadTest (gmx::test::anonymous_namespace{pmesplinespreadtest.cpp}) |
AnalysisNeighborhoodPairSearch (gmx) | ExponentialDistribution (gmx) | INeighborSearchSignallerClient (gmx) | OptionsListFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp}) | SplineAndSpreadTestBody (gmx::test::anonymous_namespace{pmesplinespreadtest.cpp}) |
AnalysisNeighborhoodPositions (gmx) | ExponentialMovingAverage (gmx) | InitialConstraintsTest (gmx::test::anonymous_namespace{initialconstraints.cpp}) | OptionsModifyingIterator (gmx) | SplineData (gmx::test::anonymous_namespace{pmegathertest.cpp}) |
AnalysisNeighborhoodSearch (gmx) | ExponentialMovingAverageState (gmx) | InstallationPrefixInfo (gmx) | OptionsModifyingTypeVisitor (gmx) | SplineTableTest (gmx::test::anonymous_namespace{splinetable.cpp}) |
AnalysisTemplate | extents (gmx) | Int64Option (gmx) | OptionsModifyingVisitor (gmx) | StandardInputStream (gmx) |
AnalyticalSplineTableInput (gmx) | extents_analyse< 0 > (gmx::detail) | Int64OptionInfo (gmx) | OptionStorageTemplate (gmx) | StartingBehaviorHandler (gmx::anonymous_namespace{handlerestart.cpp}) |
AndersenTemperatureCoupling (gmx) | extents_analyse< R, dynamic_extent, StaticExtents...> (gmx::detail) | Int64OptionStorage (gmx) | OptionStorageTemplateSimple (gmx) | StatePropagatorData (gmx) |
AnglePositionIterator (gmx::analysismodules::anonymous_namespace{angle.cpp}) | extents_analyse< R, E0, StaticExtents...> (gmx::detail) | IntegerBox (gmx) | OptionsTypeVisitor (gmx) | StaticAverageHistogram (gmx::anonymous_namespace{histogram.cpp}) |
Any (gmx) | ExtractClusterModuleTest (gmx::test::anonymous_namespace{extract_cluster.cpp}) | IntegerOption (gmx) | OptionsVisitor (gmx) | StaticDataFrameHeaderChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp}) |
AnyOutputSupportedFiles (gmx::test) |
| IntegerOptionInfo (gmx) | OptionTemplate (gmx) | StaticDataPointsChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp}) |
ApicIdLayout (gmx::anonymous_namespace{cpuinfo.cpp}) | IntegerOptionStorage (gmx) | OptionValueConverterSimple (gmx) | StaticDataPointsStorageChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp}) |
ApicInfo (gmx::anonymous_namespace{cpuinfo.cpp}) | DimParams::FepDimParams (gmx) | GpuTimers::Interaction (Nbnxm) | OptionValueStoreNull (gmx) | StaticLog2 (gmx) |
APIError (gmx) | FepStateSetting (gmx) | InteractionDefinitions | OuterProductEvaluator (gmx) | StaticLog2< 0 > (gmx) |
ArrayRef (gmx) | FEPStateValue | InteractionList | OutputAdapterContainer (gmx) | StaticLog2< 1 > (gmx) |
ArrayRefWithPadding (gmx) | FileIOError (gmx) | InteractionListHandle | OutputFile | StdioTestHelper (gmx::test) |
Atom2VsiteBond | FileIOXdrSerializer (gmx) | InteractionOfType | OutputQuantities (gmx::test::anonymous_namespace{pairs.cpp}) | StepWorkload (gmx) |
AtomData (gmx::test::anonymous_namespace{nb_free_energy.cpp}) | FileNameOption (gmx) | InteractionsOfType | OutputQuantities (gmx::test::anonymous_namespace{nb_free_energy.cpp}) | StopConditionSignal (gmx) |
AtomDistribution | FileNameOptionInfo (gmx) | InteractiveMD (gmx) | OutputQuantities (gmx::test::anonymous_namespace{bonded.cpp}) | StopConditionTime (gmx) |
AtomicStructureFactor (gmx) | FileNameOptionManager (gmx) | InteractiveMolecularDynamics (gmx) | OutputRequirementOptionDirector (gmx) | StopHandler (gmx) |
AtomIndex (gmx) | FileNameOptionStorage (gmx) | InteractiveTestHelper (gmx::test) | OutputRequirements (gmx) | StopHandlerBuilder (gmx) |
AtomIndexExtremes (gmx) | FileTypeHandler (gmx::anonymous_namespace{filenameoption.cpp}) | InterdependentTask (gmx) | OutputSelector (gmx) | StringCompare (gmx) |
AtomIndexSet | FilteringExactTextMatch (gmx::test) | InternalError (gmx) | OutputSelectorDeathTest (gmx::test) | StringFormatter (gmx) |
AtomInfoWithinMoleculeBlock (gmx) | FirstOrderPressureCoupling (gmx) | InvalidInputError (gmx) |
| StringInputStream (gmx) |
AtomInMolblock | FixedCapacityVector (gmx) | IonSwapping (gmx) | StringKeywordMatchItem (anonymous_namespace{sm_keywords.cpp}) |
AtomIterator | FlagsTemplate (gmx) | IOptionManager (gmx) | HardwareTopology::Package (gmx) | StringOption (gmx) |
AtomPair (gmx) | FlagTest (gmx::test) | IOptionsBehavior (gmx) | PackedJClusterList | StringOptionInfo (gmx) |
AtomPair (anonymous_namespace{lincs.cpp}) | FloatingPointDifference (gmx::test) | IOptionsContainer (gmx) | PackHaloExternal | StringOptionStorage (gmx) |
AtomProperties | FloatingPointTolerance (gmx::test) | IOptionsContainerWithSections (gmx) | PackHaloInternal | StringOutputStream (gmx) |
AtomProperty | FloatOption (gmx) | IOptionSectionStorage (gmx) | PaddedVector (gmx) | StringTable |
AtomProxy | FloatOptionInfo (gmx) | IOptionsFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp}) | PaddedVectorTest (gmx::test) | StringTableBuilder |
AtomRange | FloatOptionStorage (gmx) | IOptionValueStore (gmx) | PaddingTraits (gmx::detail) | StringTableEntry |
AtomsAdjacencyListElement | FloatTypeMatcher (gmx::test) | IOutputAdapter (gmx) | PageAlignedAllocationPolicy (gmx) | StringTestBase (gmx::test) |
Awh (gmx) | ForceBuffers (gmx) | IProgramContext (gmx) | PairDistance (gmx::analysismodules::anonymous_namespace{pairdist.cpp}) | StringToEnumValueConverter (gmx) |
AwhEnergyBlock (gmx) | ForceBuffersView (gmx) | IRestraintPotential (gmx) | PairDistanceModuleData (gmx::analysismodules::anonymous_namespace{pairdist.cpp}) | Subscriber (gmx::test::anonymous_namespace{observablesreducer.cpp}) |
AwhParams (gmx) | ForceElement (gmx) | ISerializer (gmx) | PairDistValue (gmx) | ObservablesReducerBuilder::Impl::Subscription (gmx) |
AwhReader | ForceHelperBuffers | ISignaller (gmx) | pairHash (gmx) | SuccessListener (gmx::test::anonymous_namespace{testinit.cpp}) |
AwhTestParameters (gmx::test) | ForceOutputs (gmx) | ISimulator (gmx) | PairlistParams | SurfaceAreaCalculator (gmx) |
| ForceProviderInput (gmx) | ISimulatorElement (gmx) | PairlistSet | swap_compartment |
ForceProviderOutput (gmx) | isIntegralConstant (gmx) | PairlistSets | swap_group |
BalanceRegion | ForceProviders (gmx) | IsSerializableEnum (gmx) | PairSearch | SwapCoordinates (gmx) |
KeyValueTreeTransformRuleBuilder::Base (gmx) | ForceWithShiftForces (gmx) | IsSerializableType (gmx) | PairsearchWork | SynopsisFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp}) |
BaseEntry | ForceWithVirial (gmx) | IsVectorOfSerializableType (gmx::test::anonymous_namespace{checkpointdata.cpp}) | ParallelConsistencyError (gmx) | SystemMomenta |
basic_mdspan (gmx) | ForeignLambdaTerms | ITemperatureCouplingImpl (gmx) | UniformRealDistribution::param_type (gmx) | SystemMomentum |
BasicAverageHistogramModule (gmx::internal) | FramePairManager (gmx::test) | TestValues::TestValueGenerator::Iterator (gmx::test::anonymous_namespace{checkpointdata.cpp}) | UniformIntDistribution::param_type (gmx) |
|
BasicHistogramImpl (gmx::internal) | FreeEnergyDispatch | Range::iterator (gmx) | TabulatedNormalDistribution::param_type (gmx) |
BasicVector (gmx) | FreeEnergyParameterTest (gmx::test::anonymous_namespace{freeenergyparameters.cpp}) | ITextBlockMatcher (gmx::test) | NormalDistribution::param_type (gmx) | t_bb |
BenchmarkSystem (gmx) | FreeEnergyParameterTestParameters (gmx::test::anonymous_namespace{freeenergyparameters.cpp}) | ITextBlockMatcherSettings (gmx::test) | GammaDistribution::param_type (gmx) | t_compare_value |
BerendsenTemperatureCoupling (gmx) | FreeEnergyPerturbationData (gmx) | ITopologyHolderClient (gmx) | ExponentialDistribution::param_type (gmx) | t_compiler_data |
Bias (gmx) | FreeVolume (gmx::analysismodules::anonymous_namespace{freevolume.cpp}) | ITopologyProvider (gmx) | ParameterizedMdrunTestFixture (gmx::test) | t_conect (gmx::analysismodules::anonymous_namespace{sasa.cpp}) |
BiasCoupledToSystem (gmx) | FrictionMetricTest (gmx::test) | ITrajectorySignallerClient (gmx) | nbnxn_atomdata_t::Params | t_coordselection |
BiasFepLambdaStateTest (gmx::test) | functor_wrapper (gmx) | ITrajectoryWriterClient (gmx) | ParrinelloRahmanBarostat (gmx) | t_edflood (anonymous_namespace{edsam.cpp}) |
BiasGrid (gmx) |
| IWrapper (gmx::anonymous_namespace{helpwritercontext.cpp}) | PartialDeserializedTprFile | t_edvecs (anonymous_namespace{edsam.cpp}) |
BiasOutputSetup |
| partition | t_eigvec (anonymous_namespace{edsam.cpp}) |
BiasParams (gmx) | GammaDistribution (gmx) | PbcAiuc | t_filenm |
BiasState (gmx) | GatherTest (gmx::test::anonymous_namespace{pmegathertest.cpp}) | JClusterList | PdbAtomEntry | t_forcetable |
BiasStateTest (gmx::test) | GatherTestBody (gmx::test::anonymous_namespace{pmegathertest.cpp}) |
| PeriodicActionsTest (gmx::test) | t_idef |
BiasTest (gmx::test) | GaussianOn1DLattice (gmx) | PhysicalNodeCommunicator (gmx) | t_ilist |
BiasWriter (gmx) | GaussianSpreadKernelParameters (gmx) | KernelBenchOptions (Nbnxm) | PlanSetupData (gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}) | t_interaction_function |
BinaryInformationSettings (gmx) | GaussTransform3D (gmx) | KernelInputParameters (gmx::test::anonymous_namespace{kernel_test.cpp}) | pme_setup_t | t_iparams |
bonded_threading_t | Grid::Geometry (Nbnxm) | KernelLaunchConfig | PmeBSplineModuliTest (gmx::test::anonymous_namespace{pmebsplinetest.cpp}) | t_mapping |
BondedInteraction | GlobalCommandLineHelpContext (gmx) | KernelOptions (gmx::test::anonymous_namespace{kernel_test.cpp}) | PmeForceSenderGpu (gmx) | t_matrix |
BondedInteractionList | GlobalCommunicationHelper (gmx) | KeyValueTreeBuilder (gmx) | PmeGpu | t_mdatoms |
BondedInteractionsTest (gmx::test) | gmx_ana_index_t | KeyValueTreeObjectArrayBuilder (gmx) | PmeGpuAtomParams | t_methoddata_compare |
BooleanOption (gmx) | gmx_ana_indexgrps_t | KeyValueTreeObjectBuilder (gmx) | PmeGpuConstParams | t_methoddata_distance |
BooleanOptionInfo (gmx) | gmx_ana_indexmap_t | KeyValueTreePath (gmx) | PmeGpuDynamicParams | t_methoddata_kweval |
BooleanOptionStorage (gmx) | gmx_ana_pos_t | KeyValueTreeTransformRuleBuilder (gmx) | PmeGpuGridParams | t_methoddata_kwint |
BoolType (gmx) | gmx_ana_poscalc_t | KeyValueTreeTransformRulesScoped (gmx) | PmeGpuHaloExchange | t_methoddata_kwreal |
BoundingBox (Nbnxm) | gmx_ana_selcollection_t | KeyValueTreeUniformArrayBuilder (gmx) | PmeGpuKernelParamsBase | t_methoddata_kwstr (anonymous_namespace{sm_keywords.cpp}) |
BoundingBox1D (Nbnxm) | gmx_ana_selmethod_help_t | KeyValueTreeValueBuilder (gmx) | PmeGpuProgram | t_methoddata_pos |
BoxDeformationHandle (gmx) | gmx_ana_selmethod_t | KeywordDetailsHelpTopic (gmx::anonymous_namespace{selhelp.cpp}) | PmeGpuProgramImpl | t_methoddata_same |
BoxDeformationTest (gmx::test::anonymous_namespace{boxdeformation.cpp}) | gmx_ana_selparam_t | KeywordsHelpTopic (gmx::anonymous_namespace{selhelp.cpp}) | PmeGpuSettings | t_nbparam |
TopologyHolder::Builder (gmx) | gmx_ana_selvalue_t |
| PmeGpuSpecific | t_oriresdata |
BuildMDModulesNotifier (gmx) | gmx_cache_protect_t | PmeGpuStaging | t_pargs |
BuildMDModulesNotifier< CurrentCallParameter, CallParameter...> (gmx) | gmx_cmap_t | LangevinTest (gmx::test::anonymous_namespace{langevin.cpp}) | PmeLoadBalanceHelper (gmx) | t_partition_item |
BuildMDModulesNotifier<> (gmx) | gmx_cmapdata_t | LangevinTestParameters (gmx::test::anonymous_namespace{langevin.cpp}) | PmePpCommGpu (gmx) | t_pbc |
| gmx_device_runtime_data_t | LastStepSignaller (gmx) | PmeShared | t_pullcoord |
gmx_domdec_constraints_t | layout_right (gmx) | PmeSolve | t_register_method |
HardwareTopology::Cache (gmx) | gmx_domdec_specat_comm_t | LeapFrogKernel | PmeSolveKernel | t_state |
CacheLineAlignedFlag (gmx) | gmx_enerdata_t | LeapFrogTest (gmx::test::anonymous_namespace{leapfrog.cpp}) | PmeTest (gmx::test::anonymous_namespace{pmetest.cpp}) | t_swap |
CalculateAcceptanceWeightSimple (gmx::test::anonymous_namespace{expanded.cpp}) | gmx_enfrot | LeapFrogTestParameters (gmx::test::anonymous_namespace{leapfrog.cpp}) | PointState (gmx) | t_symbuf |
CalcVerletBufferParameters | gmx_enfrotgrp | LegacyEnumOption (gmx) | GaussianSpreadKernelParameters::PositionAndAmplitude (gmx) | t_UmbrellaHeader |
cellInfo (gmx) | gmx_ffparams_t | LegacyInput (gmx) | PositionCalculationCollection (gmx) | t_UmbrellaWindow |
ChainIdFiller | gmx_fft_fftpack | LegacyMdrunOptions (gmx) | PotentialPointData (gmx) | t_xpmelmt |
CheckpointData (gmx) | gmx_fft_fftw3 | LegacySimulator (gmx) | PpCommManager (gmx) | TabulatedNormalDistribution (gmx) |
CheckpointDataTest (gmx::test::anonymous_namespace{checkpointdata.cpp}) | gmx_fft_mkl | LegacySimulatorData (gmx) | PpForceCommManager (gmx) | Task (anonymous_namespace{lincs.cpp}) |
CheckpointError (gmx) | gmx_ga2la_t | LennardJonesCalculator (gmx) | PpRanks | TemperatureCouplingData (gmx) |
CheckpointHandler (gmx) | gmx_help_make_index_group | LennardJonesCalculator< calculateEnergies, InteractionModifiers::ForceSwitch > (gmx) | PpRanksSendFInfo | TerminationHelper (gmx::test) |
CheckpointHeaderContents | gmx_hw_opt_t | LennardJonesCalculator< calculateEnergies, InteractionModifiers::PotSwitch > (gmx) | PreprocessingAtomTypes | TestDevice (gmx::test) |
CheckpointHelper (gmx) | gmx_kernel_timing_data_t | LennardJonesCalculator< false, InteractionModifiers::PotShift > (gmx) | PreprocessingBondAtomType | TestException (gmx::test) |
CheckpointHelperBuilder (gmx) | gmx_localtop_t | LennardJonesCalculator< true, InteractionModifiers::PotShift > (gmx) | PreprocessResidue | TestFileInputRedirector (gmx::test) |
CheckpointOptions (gmx) | gmx_molblock_t | Lincs (gmx) | PrintReplicaExchangeParametersToString (gmx::test) | TestFileManager (gmx::test) |
cl_nbparam_params | gmx_moltype_t | LincsDeviations (gmx) | ProcessFrameConversion (gmx) | TestFileOutputRedirector (gmx::test) |
ClfftInitializer (gmx) | gmx_multisim_t | LincsGpu (gmx) | HardwareTopology::ProcessingUnit (gmx) | TestHardwareEnvironment (gmx::test) |
ClHandle (gmx) | gmx_nodecomm_t | LinkFrontier (gmx) | Profiling (gmx) | TestOptionsProvider (gmx::test) |
CMainCommandLineModule (gmx::anonymous_namespace{cmdlinemodulemanager.cpp}) | gmx_pme_comm_n_box_t | ListedForces | Propagator (gmx) | TestOptionsRegistry (gmx::test::anonymous_namespace{testoptions.cpp}) |
TextTableFormatter::Impl::ColumnData (gmx) | gmx_pme_comm_vir_ene_t | ListInput (gmx::test::anonymous_namespace{pairs.cpp}) | PropagatorConnection (gmx) | TestProgramContext (gmx::test::anonymous_namespace{testinit.cpp}) |
ColvarProxyGromacs (gmx) | gmx_pme_pp | ListInput (gmx::test::anonymous_namespace{nb_free_energy.cpp}) | PropagatorTag (gmx) | TestReferenceChecker (gmx::test) |
ColvarsForceProvider (gmx) | gmx_potfit | ListOfLists (gmx) | PTCouplingArrays (gmx) | TestReferenceData (gmx::test) |
ColvarsForceProviderState (gmx) | gmx_repl_ex | LocalAtomSet (gmx) | pull_coord_work_t | TestReferenceDataImpl (gmx::test::internal) |
ColvarsMDModule (gmx::anonymous_namespace{colvarsMDModule_stub.cpp}) | gmx_reverse_top_t | LocalAtomSetManager (gmx) | pull_group_work_t | TestSystem (gmx::test::anonymous_namespace{pmegathertest.cpp}) |
ColvarsMDModule (gmx::anonymous_namespace{colvarsMDModule.cpp}) | gmx_sel_evaluate_t | LocalSettleData | PullCoordExpressionParser (gmx) | TestSystem (gmx::test::anonymous_namespace{kernel_test.cpp}) |
ColvarsModuleInfo (gmx) | gmx_sel_lexer_t | LocalTopologyChecker (gmx) | DimParams::PullDimParams (gmx) | TestValues::TestValueGenerator (gmx::test::anonymous_namespace{checkpointdata.cpp}) |
ColvarsOptions (gmx) | gmx_sel_mempool_block_t | LogEntryWriter (gmx) | PullElement (gmx) | TestValues (gmx::test::anonymous_namespace{checkpointdata.cpp}) |
ColvarsOptions (gmx::anonymous_namespace{colvarsMDModule_stub.cpp}) | gmx_sel_mempool_t | LoggerBuilder (gmx) | PullIntegrationTest (gmx::test::anonymous_namespace{pull.cpp}) | TextFileMatch (gmx::test) |
ColvarsPreProcessor (gmx) | gmx_slabdata | LoggerOwner (gmx) |
| TextInputFile (gmx) |
ColvarsSimulationsParameters (gmx) | gmx_sparsematrix | LoggerTestHelper (gmx::test) | TextInputStream (gmx) |
COMInPlaceTest (gmx::test::anonymous_namespace{com.cpp}) | gmx_specatsend_t | LoggingSignaller (gmx) | QMInputFileName (gmx) | TextLineWrapper (gmx) |
CommandLine (gmx::test) | gmx_tng_trajectory | HardwareTopology::LogicalProcessor (gmx) | QMMM (gmx::anonymous_namespace{qmmm.cpp}) | TextLineWrapperSettings (gmx) |
CommandLineCommonOptionsHolder (gmx) | gmx_wallclock_gpu_nbnxn_t | CpuInfo::LogicalProcessor (gmx) | QMMMForceProvider (gmx) | TextOutputFile (gmx) |
CommandLineHelpContext (gmx) | gmx_wallclock_gpu_pme_t | LogLevelHelper (gmx) | QMMMInputGenerator (gmx) | TextOutputStream (gmx) |
CommandLineHelpModule (gmx) | gmx_walltime_accounting | LogWriteHelper (gmx) | QMMMModuleInfo (gmx) | TextReader (gmx) |
CommandLineHelpWriter (gmx) | Gpu3dFft (gmx) |
| QMMMOptions (gmx) | TextReaderTest (gmx::test::anonymous_namespace{textreader.cpp}) |
CommandLineModuleGroup (gmx) | gpu_plist (Nbnxm) | QMMMOutputProvider (gmx::anonymous_namespace{qmmm.cpp}) | TextReaderTestParams (gmx::test::anonymous_namespace{textreader.cpp}) |
CommandLineModuleGroupData (gmx) | GpuForceReduction (gmx) | HardwareTopology::Machine (gmx) | QMMMParameters (gmx) | TextTableFormatter (gmx) |
CommandLineModuleManager (gmx) | GpuHaloExchange (gmx) | ManualOutputFile (gmx::test::anonymous_namespace{extract_cluster.cpp}) | QMMMSimulationParameterSetup (gmx::anonymous_namespace{qmmm.cpp}) | TextWriter (gmx) |
CommandLineModuleManagerTestBase (gmx::test) | gpuPlistSorting (Nbnxm) | MappedUnionFinder (gmx) | QMMMTopologyInfo (gmx) | thread_work_t |
CommandLineModuleSettings (gmx) | GpuRegionTimerImpl | layout_right::mapping (gmx) | QMMMTopologyPreprocessor (gmx) | ThreadedForceBuffer (gmx) |
CommandLineParser (gmx) | GpuRegionTimerWrapper | MaxNumFrames (gmx::test) | QuadraticSplineTable (gmx) | ThreadForceBuffer (gmx) |
CommandLineProgramContext (gmx) | GpuTaskAssignments (gmx) | MDAtoms (gmx) |
| ThreadingInfo (gmx) |
CommandLineTestBase (gmx::test) | GpuTaskAssignmentsBuilder (gmx) | MDLogger (gmx) | ThreeFry2x64 (gmx) |
CommandLineTestHelper (gmx::test) | GpuTaskMapping (gmx) | MDModules (gmx) | Range (gmx) | ThreeFry2x64Fast (gmx) |
CommandsHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp}) | GpuTimers (Nbnxm) | MDModulesAtomsRedistributedSignal (gmx) | RangeError (gmx) | ThreeFry2x64General (gmx) |
CompositeHelpTopic (gmx) | Grid (Nbnxm) | MDModulesCheckpointReadingBroadcast (gmx) | RangePartitioning (gmx) | ThrowLocation (gmx) |
CompositeSimulatorElement (gmx) | GridAxis (gmx) | MDModulesCheckpointReadingDataOnMain (gmx) | ObservablesReducerIntegrationTest::RankData (gmx::test::anonymous_namespace{observablesreducer.cpp}) | TimeOptionScaler (gmx::anonymous_namespace{timeunitmanager.cpp}) |
ComputeDebyeScattering (gmx) | GridConverter | MDModulesEnergyOutputToDensityFittingRequestChecker (gmx) | Rdf (gmx::analysismodules::anonymous_namespace{rdf.cpp}) | TimeStep (gmx) |
ComputeGlobalsElement (gmx) | GridPoint (gmx) | MDModulesEnergyOutputToQMMMRequestChecker (gmx) | RdfModuleData (gmx::analysismodules::anonymous_namespace{rdf.cpp}) | TimeUnitBehavior (gmx) |
ConfMatch (gmx::test) | GridSet (Nbnxm) | MDModulesNotifier (gmx) | ReadCheckpointDataHolder (gmx) | TimeUnitManager (gmx) |
Constraints (gmx) | GridSetData (Nbnxm) | MDModulesNotifiers (gmx) | RealFunctionvalueAtCoordinate (gmx) | TimingOptions (gmx) |
ConstraintsElement (gmx) | GridWork (Nbnxm) | MDModulesWriteCheckpointData (gmx) | ReduceKernel | TimingTest (gmx::test::anonymous_namespace{timing.cpp}) |
ConstraintsParam (gmx) | GromacsException (gmx) | MdrunCompressedXOutputTest (anonymous_namespace{compressed_x_output.cpp}) | ReferenceFileNames (gmx::test) | ToleranceError (gmx) |
ConstraintsTest (gmx::test::anonymous_namespace{constr.cpp}) | GromppMtsOpts (gmx) | MdRunInputFilename (gmx) | StatePropagatorData::ReferenceTemperatureHelper (gmx) | KeyValueTreeTransformRuleBuilder::ToObject (gmx) |
ContinuationFramePairManager (gmx::test::anonymous_namespace{exactcontinuation.cpp}) | GromppTest (anonymous_namespace{grompp.cpp}) | Mdrunner (gmx) | ReferenceTemperatureManager (gmx) | TopologyData (gmx) |
ConvertTprInfo (gmx) | OptionSectionImpl::Group (gmx::internal) | MdrunnerBuilder (gmx) | RepeatingOptionSection (gmx) | TopologyHolder (gmx) |
CorrelationBlockData::CoordData (gmx) | GyrateModuleTest (gmx::test) | MdrunNoAppendContinuationIsExact (gmx::test::anonymous_namespace{exactcontinuation.cpp}) | RepeatingOptionSectionHandle (gmx) | TopologyInformation (gmx) |
CoordinatesAndBoxPreprocessed (gmx) |
| MdrunOptions (gmx) | RepeatingOptionSectionStorage (gmx) | TopologyManager (gmx::test) |
CoordState (gmx) | MdrunRerunTest (gmx::test::anonymous_namespace{rerun.cpp}) | ReplicaExchangeParameters | KeyValueTreeTransformRuleBuilder::ToValue (gmx) |
HardwareTopology::Core (gmx) | HardwareTopology (gmx) | MdrunTestFixture (gmx::test) | SelectionOptionManager::Impl::RequestsClearer (gmx) | TpiTest (gmx::test::anonymous_namespace{tpitest.cpp}) |
BoundingBox::Corner (Nbnxm) | HashedMap (gmx) | MdrunTestFixtureBase (gmx::test) | RequireEvenRankCountWithAtLeastFourRanks (gmx::test::anonymous_namespace{threadaffinity_mpi.cpp}) | TprAndFileManager (gmx::test) |
DispersionCorrection::Correction | HbondModuleTest (gmx::test) | MembedHolder (gmx) | RequireMinimumRankCount (gmx::test) | TpxFileHeader |
CorrelationBlockData (gmx) | HbondStorage (gmx::analysismodules::anonymous_namespace{hbond.cpp}) | MempoolGroupReserver (anonymous_namespace{evaluate.cpp}) | RequireRankCount (gmx::test) | TrajectoryAnalysisCommandLineRunner (gmx) |
CorrelationGrid (gmx) | HbondStorageFrame (gmx::analysismodules::anonymous_namespace{hbond.cpp}) | MempoolSelelemReserver (anonymous_namespace{evaluate.cpp}) | ResetHandler (gmx) | TrajectoryAnalysisModule (gmx) |
CorrelationTensor (gmx) | HelpExportCompletion (gmx::anonymous_namespace{cmdlinehelpmodule.cpp}) | MessageStringCollector (gmx) | ResInfo (gmx::analysismodules::anonymous_namespace{dssp.cpp}) | TrajectoryAnalysisModuleData (gmx) |
CoulombCalculator (gmx) | HelpExportReStructuredText (gmx::anonymous_namespace{cmdlinehelpmodule.cpp}) | MessageStringContext (gmx) | RestraintForceProvider (gmx) | TrajectoryAnalysisModuleDataBasic (gmx::anonymous_namespace{analysismodule.cpp}) |
CoulombCalculator< KernelCoulombType::EwaldAnalytical > (gmx) | HelpLinks (gmx) | MessageWriterFileNoThrow (gmx::anonymous_namespace{exceptions.cpp}) | RestraintManager (gmx) | TrajectoryAnalysisModuleTestFixture (gmx::test) |
CoulombCalculator< KernelCoulombType::EwaldTabulated > (gmx) | HelpManager (gmx) | MessageWriterString (gmx::anonymous_namespace{exceptions.cpp}) | RestraintMDModule (gmx) | TrajectoryAnalysisRunnerCommon (gmx) |
CoulombCalculator< KernelCoulombType::RF > (gmx) | HelpWriterContext (gmx) | MessageWriterTextWriter (gmx::anonymous_namespace{exceptions.cpp}) | RestraintMDModuleImpl (gmx) | TrajectoryAnalysisSettings (gmx) |
CpuInfo (gmx) | HistogramSize (gmx) | methoddata_insolidangle | ReverseTopOptions | TrajectoryComparison (gmx::test) |
Constraints::CreationHelper (gmx) | history_t | methoddata_merge | RocfftInitializer (gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}) | TrajectoryElement (gmx) |
CromerMannParameters (gmx) | HostAllocationPolicy (gmx) | methoddata_permute | RocfftPlan (gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}) | TrajectoryElementBuilder (gmx) |
CrossCorrelationEvaluationHelperValues (gmx::anonymous_namespace{densityfit.cpp}) | HostAllocatorTest (gmx::test) | MimicCommunicator (gmx) | RootHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp}) | TrajectoryFileOpener (gmx) |
CrossCorrelationGradientAtVoxel (gmx::anonymous_namespace{densityfit.cpp}) | HostAllocatorTestNoMem (gmx::test) | MimicTest (gmx::test) | RotationTest (gmx::test::anonymous_namespace{pull_rotation.cpp}) | TrajectoryFrame (gmx) |
CrystallographicLabels (gmx) | HostAllocatorTestNoMemCopyable (gmx::test) | MindistAction (gmx::anonymous_namespace{nbsearch.cpp}) | RstParagraphIterator (gmx) | TrajectoryFrameMatchSettings (gmx::test) |
CubicSplineTable (gmx) | HostInteractionList (gmx) | MissingElementConnectionError (gmx) | RVecMatcher (gmx::test) | TrajectoryFrameReader (gmx::test) |
| HostMemoryTest (gmx::test) | MockAverageHistogram (anonymous_namespace{histogram.cpp}) |
| TrajectoryFrameWriter (gmx) |
| MockHardwareTopologyTest (gmx::test::anonymous_namespace{mockhardwaretopology.cpp}) | TrajectoryFrameWriterTest (gmx::test) |
DataFileFinder (gmx) | MockModule (gmx::test) | SansDebye (gmx) | TrajectorySignaller (gmx) |
DataFileInfo (gmx) | IAnalysisDataModule (gmx) | MockOption (anonymous_namespace{abstractoptionstorage.cpp}) | Sasa (gmx::analysismodules::anonymous_namespace{sasa.cpp}) | TrajectoryTolerances (gmx::test) |
DataFileOptions (gmx) | ICheckpointHelperClient (gmx) | MockOptionsModule (gmx::test) | SasaModuleData (gmx::analysismodules::anonymous_namespace{sasa.cpp}) | TranslateAndScale (gmx) |
DataStorageRequester (gmx::test::anonymous_namespace{mock_datamodule.cpp}) | NbnxnPairlistCpuWork::IClusterData | MockOptionStorage (anonymous_namespace{abstractoptionstorage.cpp}) | SaxsDebye (gmx) |
|
dd_corners_t | ICommandLineModule (gmx) | ModularSimulator (gmx) | ScalarDataTypes |
DDBalanceRegionHandler | ICommandLineOptionsModule (gmx) | ModularSimulatorAlgorithm (gmx) | ScalingMatrix (gmx) | UmbrellaOptions |
DDGridSetup | ICommandLineOptionsModuleSettings (gmx) | ModularSimulatorAlgorithmBuilder (gmx) | ScatteringModule (gmx::test::anonymous_namespace{scattering.cpp}) | UniformIntDistribution (gmx) |
DDPairInteractionRanges | IdentityFormatter (gmx) | ModularSimulatorAlgorithmBuilderHelper (gmx) | SearchCycleCounting | UniformRealDistribution (gmx) |
DefaultExecutableEnvironment (gmx::anonymous_namespace{cmdlineprogramcontext.cpp}) | IDomDecHelperClient (gmx) | ModularSimulatorError (gmx) | SecondaryStructures (gmx::analysismodules::anonymous_namespace{dssp.cpp}) | UnionFinder (gmx) |
DefaultInitializationAllocator (gmx) | IEnergyAnalysis (gmx) | ModuleHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp}) | SecondaryStructuresData (gmx::analysismodules::anonymous_namespace{dssp.cpp}) | UnitCellInfo |
DefaultInputRedirector (gmx::anonymous_namespace{fileredirector.cpp}) | IEnergySignallerClient (gmx) | AnalysisDataModuleManager::Impl::ModuleInfo (gmx) | Selection (gmx) | UnpackAndAddHaloInternal |
DefaultOutputRedirector (gmx::anonymous_namespace{fileredirector.cpp}) | IExceptionInfo (gmx::internal) | ModuleSelection (gmx::test) | SelectionCollection (gmx) | UnpackHaloExternal |
DefaultProgramContext (gmx::anonymous_namespace{programcontext.cpp}) | IExecutableEnvironment (gmx) | ModuleTest (gmx::test) | SelectionData (gmx::internal) | Update (gmx) |
DensityFitting (gmx::anonymous_namespace{densityfitting.cpp}) | IFileInputRedirector (gmx) | MolecularTopologyAtomIndices | SelectionEvaluator (gmx) | UpdateGroups (gmx) |
DensityFittingAmplitudeLookup (gmx) | IFileMatcher (gmx::test) | MoleculeBlockIndices | SelectionFileOption (gmx) | UpdateGroupsCog (gmx) |
DensityFittingForce (gmx) | IFileMatcherSettings (gmx::test) | MoleculeData (gmx::analysismodules::anonymous_namespace{msd.cpp}) | SelectionFileOptionInfo (gmx) | UpdateGroupsTest (gmx::anonymous_namespace{updategroups.cpp}) |
DensityFittingForceProvider (gmx) | IFileOutputRedirector (gmx) | MoleculeInformation | SelectionFileOptionStorage (gmx) | UserInputError (gmx) |
DensityFittingForceProviderState (gmx) | IForceProvider (gmx) | MoleculePatch | SelectionLocation (gmx) | UserInputTest (gmx::test) |
DensityFittingModuleInfo (gmx) | IFrameConverter (gmx) | MoleculePatchDatabase | SelectionOption (gmx) |
|
DensityFittingOptions (gmx) | IHelpExport (gmx::anonymous_namespace{cmdlinehelpmodule.cpp}) | MoleculeType | SelectionOptionBehavior (gmx) |
DensityFittingOutputProvider (gmx) | IHelpTopic (gmx) | MrcDataStatistics (gmx) | SelectionOptionInfo (gmx) | VelocityScalingTemperatureCoupling (gmx) |
DensityFittingParameters (gmx) | IKeyValueTreeTransformRules (gmx) | MrcDensityMapHeader (gmx) | SelectionOptionManager (gmx) | VirtualSiteTest::VirtualSite (gmx::test::anonymous_namespace{virtualsites.cpp}) |
DensityFittingSimulationParameterSetup (gmx::anonymous_namespace{densityfitting.cpp}) | ILastStepSignallerClient (gmx) | MrcDensityMapOfFloatFromFileReader (gmx) | SelectionOptionStorage (gmx) | VirtualSiteTopology::VirtualSiteAngle |
DensityFittingTest (gmx::test) | ilist_data_t | MrcDensityMapOfFloatReader (gmx) | SelectionParserParameter (gmx) | VirtualSiteTopology::VirtualSiteBond |
DensitySimilarityCrossCorrelation (gmx::anonymous_namespace{densityfit.cpp}) | iListInput (gmx::test::anonymous_namespace{bonded.cpp}) | MrcDensityMapOfFloatWriter (gmx) | SelectionParserSymbol (gmx) | VirtualSiteConfiguration |
DensitySimilarityInnerProduct (gmx::anonymous_namespace{densityfit.cpp}) | IListIterator | MrcDensitySkewData (gmx) | SelectionParserSymbolIterator (gmx) | VirtualSitesHandler (gmx) |
DensitySimilarityMeasure (gmx) | IListProxy | Msd (gmx::analysismodules) | SelectionParserSymbolTable (gmx) | VirtualSiteTopology |
DensitySimilarityRelativeEntropy (gmx::anonymous_namespace{densityfit.cpp}) | IListRange | MsdData::MsdColumnProxy (gmx::analysismodules::anonymous_namespace{msd.cpp}) | SelectionParserValue (gmx) | VRescaleTemperatureCoupling (gmx) |
DevelopmentFeatureFlags (gmx) | ILoggingSignallerClient (gmx) | MsdCoordinateManager (gmx::analysismodules::anonymous_namespace{msd.cpp}) | SelectionPosition (gmx) | VsiteAtomMapping |
HardwareTopology::Device (gmx) | ILogTarget (gmx) | MsdData (gmx::analysismodules::anonymous_namespace{msd.cpp}) | SelectionOptionManager::Impl::SelectionRequest (gmx) | VsiteBondedInteraction |
DeviceDetectionResult (gmx) | IMDEnergyBlock (gmx) | MsdGroupData (gmx::analysismodules::anonymous_namespace{msd.cpp}) | SelectionTopologyProperties (gmx) | VsiteBondParameter |
DeviceInformation | IMDHeader (gmx) | MsdMatcher (gmx::test::anonymous_namespace{msd.cpp}) | SelectionTreeElement (gmx) | VsiteThread (gmx) |
DeviceStream | IMDModule (gmx) | MtsLevel (gmx) | SelelemTemporaryValueAssigner (anonymous_namespace{evaluate.cpp}) |
|
DeviceStreamManager (gmx) | ImdOptions (gmx) | MttkBoxScaling (gmx) | SelMethodEvalContext (gmx) |
DeviceStreamManagerTest (gmx::test::anonymous_namespace{device_stream_manager.cpp}) | IMDOutputProvider (gmx) | MttkData (gmx) | SeparatePmeRanksPermitted (gmx) | wallcc_t |
df_history_t | IMdpOptionProvider (gmx) | MttkElement (gmx) | SetAtoms (gmx) | WarningHandler |
DiagonalMasker (gmx) | IMDSocket (gmx) | MttkPropagatorConnection (gmx) | SetAtomsSupportedFiles (gmx::test) | WaterMolecule |
DiagonalMasker< nR, kernelLayout, KernelLayoutClusterRatio::JSizeEqualsISize > (gmx) | IMessageWriter (gmx::anonymous_namespace{exceptions.cpp}) | MttkPropagatorConnectionDetails (gmx) | SetAtomsTest (gmx::test) | WholeMoleculeTransform (gmx) |
DiagonalMasker< nR, kernelLayout, KernelLayoutClusterRatio::JSizeIsDoubleISize > (gmx) | Update::Impl | MultiDimArray (gmx) | SetAtomsUnSupportedFiles (gmx::test) | WorkDivision |
DiagonalMasker< nR, kernelLayout, KernelLayoutClusterRatio::JSizeIsHalfISize > (gmx) | gmx_reverse_top_t::Impl | MultiSimTest (gmx::test) | SetBothTimeTest (gmx::test) | WrapperToString (gmx::anonymous_namespace{helpwritercontext.cpp}) |
Grid::Dimensions (Nbnxm) | VirtualSitesHandler::Impl (gmx) |
| SetBox (gmx) | WrapperToVector (gmx::anonymous_namespace{helpwritercontext.cpp}) |
DimParams (gmx) | UpdateConstrainGpu::Impl (gmx) | SetForces (gmx) | WriteCheckpointDataHolder (gmx) |
DipoleData | TrajectoryAnalysisSettings::Impl (gmx) | NBAtomDataGpu | SetForceSupportedFiles (gmx::test) |
|
DirectoryEnumerator (gmx) | TrajectoryAnalysisModuleData::Impl (gmx) | NbnxmGpu | SetForceUnSupportedFiles (gmx::test) |
AtomDistribution::DomainAtomGroups | TrajectoryAnalysisModule::Impl (gmx) | NbnxmKernel | SetPrecision (gmx) | GpuTimers::XFTransfers (Nbnxm) |
DomainDecompositionBuilder (gmx) | TextTableFormatter::Impl (gmx) | NbnxmKernelPruneOnly | SetPrecisionSupportedFiles (gmx::test) | XvgMatch (gmx::test) |
DomainInfo (gmx) | TextReader::Impl (gmx) | NbnxmKernelTest (gmx::test::anonymous_namespace{kernel_test.cpp}) | SetPrecisionUnSupportedFiles (gmx::test) | |
DomainLifetimeWorkload (gmx) | TestReferenceChecker::Impl (gmx::test) | NbnxmKernelTestBody (gmx::test) | SetStartTime (gmx) | |
GridSet::DomainSetup (Nbnxm) | TestFileManager::Impl (gmx::test) | nbnxn_atomdata_output_t | SetStartTimeTest (gmx::test) | |
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