|
| DomdecZones (gmx) | MockAnalysisDataModule::Impl (gmx::test) | nbnxn_atomdata_output_t (gmx) | SetForceSupportedFiles (gmx::test) |
| DoubleOption (gmx) | SelectionParserSymbolTable::Impl (gmx) | nbnxn_atomdata_t (gmx) | SetForceUnSupportedFiles (gmx::test) |
| AbstractAnalysisArrayData (gmx) | DoubleOptionInfo (gmx) | SelectionParserSymbolIterator::Impl (gmx) | nbnxn_ci_t (gmx) | SetPrecision (gmx) |
| AbstractAnalysisData (gmx) | DoubleOptionStorage (gmx) | SelectionParserSymbol::Impl (gmx) | nbnxn_cj_packed_t (gmx) | SetPrecisionSupportedFiles (gmx::test) |
| AbstractAverageHistogram (gmx) | DsspModuleTest (gmx::test::anonymous_namespace{dssp.cpp}) | SelectionOptionManager::Impl (gmx) | nbnxn_cj_t (gmx) | SetPrecisionUnSupportedFiles (gmx::test) |
| AbstractCompositeHelpTopic (gmx) | DsspStorage (gmx::analysismodules::anonymous_namespace{dssp.cpp}) | SelectionCollection::Impl (gmx) | nbnxn_cycle_t (gmx) | SetStartTime (gmx) |
| AbstractOption (gmx) | DsspStorageFrame (gmx::analysismodules::anonymous_namespace{dssp.cpp}) | RestraintManager::Impl (gmx) | nbnxn_excl_t (gmx) | SetStartTimeTest (gmx::test) |
| AbstractOptionSection (gmx) |
| PositionCalculationCollection::Impl (gmx) | nbnxn_im_ei_t (gmx) | SetTimeStep (gmx) |
| AbstractOptionSectionHandle (gmx) | PmePpCommGpu::Impl (gmx) | nbnxn_sci_t (gmx) | SetTimeStepTest (gmx::test) |
| AbstractOptionStorage (gmx) | EdrOutputFilename (gmx) | PmeForceSenderGpu::Impl (gmx) | NbnxnPairlistCpu (gmx) | SettleData (gmx) |
| AbstractPlotModule (gmx) | ekinstate_t | PmeCoordinateReceiverGpu::Impl (gmx) | NBParamGpu (gmx) | SettleGpu (gmx) |
| AbstractSimpleHelpTopic (gmx) | ElectricField (gmx::anonymous_namespace{electricfield.cpp}) | OptionsAssigner::Impl (gmx) | NBStagingData (gmx) | SettleTest (gmx::test::anonymous_namespace{settle.cpp}) |
| AbstractTrajectoryAnalysisModuleTestFixture (gmx::test) | ElectricFieldDimension (gmx::anonymous_namespace{electricfield.cpp}) | ObservablesReducerBuilder::Impl (gmx) | NeighborSearchSignaller (gmx) | SettleTestParameters (gmx::test::anonymous_namespace{settle.cpp}) |
| accessor_basic (gmx) | StatePropagatorData::Element (gmx) | ObservablesReducer::Impl (gmx) | NelderMeadParameters (gmx::anonymous_namespace{neldermead.cpp}) | SettleWaterTopology |
| AffineTransformation (gmx) | FreeEnergyPerturbationData::Element (gmx) | MrcDensityMapOfFloatWriter::Impl (gmx) | NelderMeadSimplex (gmx) | SetVelocities (gmx) |
| KeyValueTreeTransformRuleBuilder::AfterFrom (gmx) | EnergyData::Element (gmx) | MrcDensityMapOfFloatReader::Impl (gmx) | NNPotForceProvider (gmx) | SetVelocitySupportedFiles (gmx::test) |
| AlignedAllocationPolicy (gmx) | ElementNotFoundError (gmx) | MdGpuGraph::Impl (gmx) | NNPotMDModule (gmx::anonymous_namespace{nnpot.cpp}) | SetVelocityUnSupportedFiles (gmx::test) |
| AlignedArray< double, N > (gmx) | em_state | LocalTopologyChecker::Impl (gmx) | NNPotModuleInfo (gmx) | shakedata (gmx) |
| AlignedArray< float, N > (gmx) | EnergyAccumulator (gmx) | LocalAtomSetManager::Impl (gmx) | NNPotParameters (gmx) | ShakeTest (gmx::test::anonymous_namespace{shake.cpp}) |
| Allocator (gmx) | EnergyAccumulator< false, true > (gmx) | ListedForcesGpu::Impl (gmx) | NNPotTopologyPreprocessor (gmx) | GaussianSpreadKernelParameters::Shape (gmx) |
| AllocatorTest (gmx::test) | EnergyAccumulator< true, true > (gmx) | ImdSession::Impl (gmx) | NNPotTopologyPreprocessorTest (gmx::test) | HelpWriterContext::Impl::SharedState (gmx) |
| AllowAnyRankCount (gmx::test) | EnergyAccumulator< useEnergyGroups, false > (gmx) | HelpWriterContext::Impl (gmx) | no_delete (gmx) | SignallerBuilder (gmx) |
| AllVsiteBondedInteractions | EnergyAccumulatorGetter (gmx::anonymous_namespace{simd_kernel.h}) | HelpManager::Impl (gmx) | BuildMDModulesNotifier<>::NoCallParameter (gmx) | SignalTest (gmx::test) |
| AnalysisArrayData (gmx) | EnergyAccumulatorGetter< false, false > (gmx::anonymous_namespace{simd_kernel.h}) | HelpLinks::Impl (gmx) | NoContentsMatch (gmx::test) | Simd4DBool (gmx) |
| AnalysisData (gmx) | EnergyAccumulatorGetter< false, true > (gmx::anonymous_namespace{simd_kernel.h}) | GpuHaloExchange::Impl (gmx) | nonbonded_verlet_t (gmx) | Simd4Double (gmx) |
| AnalysisDataAverageModule (gmx) | EnergyAccumulatorGetter< true, true > (gmx::anonymous_namespace{simd_kernel.h}) | Gpu3dFft::ImplSyclVkfft::Impl (gmx) | NonbondedBenchmarkInfo (gmx) | Simd4FBool (gmx) |
| AnalysisDataBinAverageModule (gmx) | EnergyAnalysisFrame (gmx) | Gpu3dFft::ImplSyclRocfft::Impl (gmx) | NoOptionalOutput (gmx::test) | Simd4Float (gmx) |
| AnalysisDataDisplacementModule (gmx) | EnergyCalculationFrequencyErrors (gmx) | Gpu3dFft::ImplOclVkfft::Impl (gmx) | NormalDistribution (gmx) | SimdArrayRef (gmx::internal) |
| AnalysisDataFrameAverageModule (gmx) | EnergyComparison (gmx::test) | Gpu3dFft::ImplHipVkFft::Impl (gmx) | NormalModesTest (gmx::test::anonymous_namespace{normalmodes.cpp}) | SimdBaseTest (gmx::test) |
| AnalysisDataFrameAverager (gmx) | EnergyData (gmx) | Gpu3dFft::ImplHipRocfft::Impl (gmx) | NoseHooverChainsData (gmx) | SimdDBool (gmx) |
| AnalysisDataFrameHeader (gmx) | EnergyDriftTracker (gmx) | Gpu3dFft::Impl (gmx) | NoseHooverChainsElement (gmx) | SimdDIBool (gmx) |
| AnalysisDataFrameLocalData (gmx) | EnergyEvaluator (anonymous_namespace{minimize.cpp}) | GaussTransform3D::Impl (gmx) | NoseHooverGroup (gmx) | SimdDInt32 (gmx) |
| AnalysisDataFrameLocalDataHandle (gmx) | EnergyFrame (gmx) | FileNameOptionManager::Impl (gmx) | NoseHooverTemperatureCoupling (gmx) | SimdDInt32Tag (gmx) |
| AnalysisDataFrameLocalDataSetHandle (gmx) | EnergyFrameReader (gmx::test) | DomainDecompositionBuilder::Impl (gmx) | not_null (gmx::compat) | SimdDouble (gmx) |
| AnalysisDataFrameRef (gmx) | EnergyFunctionProperties (gmx) | DeviceStreamManager::Impl (gmx) | NoTextMatch (gmx::test) | SimdDoubleTag (gmx) |
| AnalysisDataHandle (gmx) | EnergyGroupsPerCluster (gmx) | DensityFittingForce::Impl (gmx) | NotImplementedError (gmx) | SimdFBool (gmx) |
| AnalysisDataHandleImpl (gmx::internal) | EnergyMinimizationTest (gmx::test::anonymous_namespace{minimize.cpp}) | CommandLineParser::Impl (gmx) | HardwareTopology::Numa (gmx) | SimdFIBool (gmx) |
| AnalysisDataLifetimeModule (gmx) | EnergyNameUnit (gmx) | CommandLineModuleManager::Impl (gmx) | HardwareTopology::NumaNode (gmx) | SimdFInt32 (gmx) |
| AnalysisDataModuleManager (gmx) | EnergyOutputTest (gmx::test::anonymous_namespace{energyoutput.cpp}) | CommandLineHelpWriter::Impl (gmx) | NumericalSplineTableInput (gmx) | SimdFInt32Tag (gmx) |
| AnalysisDataModuleParallel (gmx) | EnergyOutputTestParameters (gmx::test::anonymous_namespace{energyoutput.cpp}) | CommandLineHelpContext::Impl (gmx) | NumPmeDomains | SimdFloat (gmx) |
| AnalysisDataModuleSerial (gmx) | EnergySignaller (gmx) | AnalysisDataWeightedHistogramModule::Impl (gmx) | NumRanksPerSimulation (gmx::test) | SimdFloatTag (gmx) |
| AnalysisDataParallelOptions (gmx) | EnergyTerm (gmx) | AnalysisDataSimpleHistogramModule::Impl (gmx) | nvshmemHaloExchangeOps (gmx) | nbnxn_atomdata_t::SimdMasks (gmx) |
| AnalysisDataPlotModule (gmx) | EnsembleTemperature (gmx) | AnalysisDataModuleManager::Impl (gmx) | NvshmemPpCommData (gmx) | SimdSetZeroProxy (gmx) |
| AnalysisDataPlotSettings (gmx) | gmx_ga2la_t::Entry | AnalysisDataLifetimeModule::Impl (gmx) |
| SimdTraits (gmx::internal) |
| AnalysisDataPointSetRef (gmx) | EnumClassSuitsEnumerationArray (gmx) | AnalysisDataDisplacementModule::Impl (gmx) | SimpleHelpTopic (gmx) |
| AnalysisDataProxy (gmx) | EnumerationArray (gmx) | AnalysisData::Impl (gmx) | ObservablesHistory | SimpleMdrunTest (gmx::test::anonymous_namespace{simple_mdrun.cpp}) |
| AnalysisDataSimpleHistogramModule (gmx) | EnumerationIterator (gmx) | AbstractCompositeHelpTopic::Impl (gmx) | ObservablesReducer (gmx) | SimulationAlgorithmSetupError (gmx) |
| AnalysisDataStorage (gmx) | EnumerationWrapper (gmx) | AbstractAnalysisData::Impl (gmx) | ObservablesReducerBuilder (gmx) | SimulationContext (gmx) |
| AnalysisDataStorageFrame (gmx) | EnumIndexStore (gmx::internal) | ExclusionChecker::Impl | ObservablesReducerIntegrationTest (gmx::test::anonymous_namespace{observablesreducer.cpp}) | SimulationGroups |
| AnalysisDataStorageFrameData (gmx::internal) | EnumOption (gmx) | BalanceRegion::Impl | ObsoleteToolModule (anonymous_namespace{legacymodules.cpp}) | SimulationInputHandle (gmx) |
| AnalysisDataStorageImpl (gmx::internal) | EnumOptionInfo (gmx) | AtomProperties::Impl | Offset (gmx) | SimulationInputHandleImplDeleter (gmx::detail) |
| AnalysisDataTestFixture (gmx::test) | EnumOptionStorage (gmx) | Gpu3dFft::ImplCuFft (gmx) | omp_module_nthreads_t | SimulationInstabilityError (gmx) |
| AnalysisDataTestInput (gmx::test) | EqualCaseInsensitive (gmx) | Gpu3dFft::ImplCuFftMp (gmx) | OpenClTraits (gmx) | SimulationParticle |
| AnalysisDataTestInputFrame (gmx::test) | ErrorMessage (gmx::anonymous_namespace{exceptions.cpp}) | Gpu3dFft::ImplHipRocfft (gmx) | OpenClTraits< cl_command_queue > (gmx) | SimulationRunner (gmx::test) |
| AnalysisDataTestInputPointSet (gmx::test) | EwaldBoxZScaler | Gpu3dFft::ImplHipVkFft (gmx) | OpenClTraits< cl_context > (gmx) | SimulationSignal (gmx) |
| AnalysisDataValue (gmx) | EwaldSurfaceTermTest (gmx::test::anonymous_namespace{ewaldsurfaceterm.cpp}) | Gpu3dFft::ImplOcl (gmx) | OpenClTraits< cl_kernel > (gmx) | SimulationSignaller (gmx) |
| AnalysisDataVectorPlotModule (gmx) | ExactTextMatch (gmx::test) | Gpu3dFft::ImplOclVkfft (gmx) | OpenClTraits< cl_program > (gmx) | SimulationTimeStep (gmx) |
| AnalysisDataWeightedHistogramModule (gmx) | ExceptionInfo (gmx) | Gpu3dFft::ImplSycl (gmx) | OpenClTraitsBase (gmx) | SimulationWorkload (gmx) |
| AnalysisHistogramSettings (gmx) | ExceptionInitializer (gmx) | Gpu3dFft::ImplSyclBbfft (gmx) | OptimisationResult (gmx) | SimulatorBuilder (gmx) |
| AnalysisHistogramSettingsInitializer (gmx) | ExclusionBlock (gmx) | Gpu3dFft::ImplSyclMkl (gmx) | OptionInfo (gmx) | SimulatorConfig (gmx) |
| AnalysisNeighborhood (gmx) | ExclusivePrefixSum (gmx) | Gpu3dFft::ImplSyclRocfft (gmx) | OptionManagerContainer (gmx) | SimulatorEnv (gmx) |
| AnalysisNeighborhoodPair (gmx) | ExpandedEnsembleElement (gmx) | Gpu3dFft::ImplSyclVkfft (gmx) | Options (gmx) | SimulatorStateData (gmx) |
| AnalysisNeighborhoodPairSearch (gmx) | ExpandedEnsembleTest (gmx::test::anonymous_namespace{expandedensemble.cpp}) | InconsistentInputError (gmx) | OptionsAdapter (gmx::anonymous_namespace{pargs.cpp}) | SingleRankChecker (anonymous_namespace{resourcedivision.cpp}) |
| AnalysisNeighborhoodPositions (gmx) | ExponentialDistribution (gmx) | IndexBlockTest (gmx::test::anonymous_namespace{indexutil.cpp}) | OptionsAssigner (gmx) | Site (gmx) |
| AnalysisNeighborhoodSearch (gmx) | ExponentialMovingAverage (gmx) | IndexFileWriterModule (gmx::analysismodules::anonymous_namespace{select.cpp}) | OptionsBehaviorCollection (gmx) | SolveKernelParams |
| AnalysisTemplate | ExponentialMovingAverageState (gmx) | IndexGroup | OptionSection (gmx) | SolveTest (gmx::test::anonymous_namespace{pmesolvetest.cpp}) |
| AnalyticalSplineTableInput (gmx) | extents (gmx) | IndexGroupsAndNames (gmx) | OptionSectionHandle (gmx) | SolveTestBody (gmx::test::anonymous_namespace{pmesolvetest.cpp}) |
| AndersenTemperatureCoupling (gmx) | extents_analyse< 0 > (gmx::detail) | INeighborSearchSignallerClient (gmx) | OptionSectionImpl (gmx::internal) | sort_along_vec_t |
| AnglePositionIterator (gmx::analysismodules::anonymous_namespace{angle.cpp}) | extents_analyse< R, dynamic_extent, StaticExtents...> (gmx::detail) | InitialConstraintsTest (gmx::test::anonymous_namespace{initialconstraints.cpp}) | OptionsFilter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp}) | spheresurfacebin |
| Any (gmx) | extents_analyse< R, E0, StaticExtents...> (gmx::detail) | INNPotModel (gmx) | OptionsImpl (gmx::internal) | SplineAndSpreadTest (gmx::test::anonymous_namespace{pmesplinespreadtest.cpp}) |
| AnyOutputSupportedFiles (gmx::test) | ExtractClusterModuleTest (gmx::test::anonymous_namespace{extract_cluster.cpp}) | InstallationPrefixInfo (gmx) | OptionsIterator (gmx) | SplineAndSpreadTestBody (gmx::test::anonymous_namespace{pmesplinespreadtest.cpp}) |
| ApicIdLayout (gmx::anonymous_namespace{cpuinfo.cpp}) |
| Int64Option (gmx) | OptionsListFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp}) | SplineData (gmx::test::anonymous_namespace{pmegathertest.cpp}) |
| ApicInfo (gmx::anonymous_namespace{cpuinfo.cpp}) | Int64OptionInfo (gmx) | OptionsModifyingIterator (gmx) | SplineTableTest (gmx::test::anonymous_namespace{splinetable.cpp}) |
| APIError (gmx) | DimParams::FepDimParams (gmx) | Int64OptionStorage (gmx) | OptionsModifyingTypeVisitor (gmx) | StandardInputStream (gmx) |
| ArrayRef (gmx) | FepStateSetting (gmx) | IntegerBox (gmx) | OptionsModifyingVisitor (gmx) | StartingBehaviorHandler (gmx::anonymous_namespace{handlerestart.cpp}) |
| ArrayRefWithPadding (gmx) | FEPStateValue | IntegerOption (gmx) | OptionStorageTemplate (gmx) | StatePropagatorData (gmx) |
| Atom2VsiteBond | FileIOError (gmx) | IntegerOptionInfo (gmx) | OptionStorageTemplateSimple (gmx) | StaticAverageHistogram (gmx::anonymous_namespace{histogram.cpp}) |
| AtomData (gmx::test::anonymous_namespace{freeenergykernel.cpp}) | FileIOXdrSerializer (gmx) | IntegerOptionStorage (gmx) | OptionsTypeVisitor (gmx) | StaticDataFrameHeaderChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp}) |
| AtomDistribution | FileNameOption (gmx) | GpuTimers::Interaction (gmx) | OptionsVisitor (gmx) | StaticDataPointsChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp}) |
| AtomicStructureFactor (gmx) | FileNameOptionInfo (gmx) | InteractionDefinitions | OptionTemplate (gmx) | StaticDataPointsStorageChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp}) |
| AtomIndex (gmx) | FileNameOptionManager (gmx) | InteractionList | OptionValueConverterSimple (gmx) | StaticLog2 (gmx) |
| AtomIndexExtremes (gmx) | FileNameOptionStorage (gmx) | InteractionListHandle | OptionValueStoreNull (gmx) | StaticLog2< 0 > (gmx) |
| AtomIndexSet | FileTypeHandler (gmx::anonymous_namespace{filenameoption.cpp}) | InteractionOfType | OuterProductEvaluator (gmx) | StaticLog2< 1 > (gmx) |
| AtomInfoWithinMoleculeBlock (gmx) | FilteringExactTextMatch (gmx::test) | InteractionsOfType | OutputAdapterContainer (gmx) | StdioTestHelper (gmx::test) |
| AtomInMolblock | FirstOrderPressureCoupling (gmx) | InteractiveMD (gmx) | OutputFile | StepWorkload (gmx) |
| AtomIterator | FixedCapacityVector (gmx) | InteractiveMolecularDynamics (gmx) | OutputQuantities (gmx::test::anonymous_namespace{pairs.cpp}) | StopConditionSignal (gmx) |
| AtomPair (gmx) | FlagsTemplate (gmx) | InteractiveTestHelper (gmx::test) | OutputQuantities (gmx::test::anonymous_namespace{freeenergykernel.cpp}) | StopConditionTime (gmx) |
| AtomPair (anonymous_namespace{lincs.cpp}) | FlagTest (gmx::test) | InterdependentTask (gmx) | OutputQuantities (gmx::test::anonymous_namespace{bonded.cpp}) | StopHandler (gmx) |
| AtomPairlist (gmx) | FloatingPointDifference (gmx::test) | InternalError (gmx) | OutputRequirementOptionDirector (gmx) | StopHandlerBuilder (gmx) |
| AtomProperties | FloatingPointTolerance (gmx::test) | InvalidInputError (gmx) | OutputRequirements (gmx) | StringCompare (gmx) |
| AtomProperty | FloatOption (gmx) | IonSwapping (gmx) | OutputSelector (gmx) | StringFormatter (gmx) |
| AtomProxy | FloatOptionInfo (gmx) | IOptionManager (gmx) | OutputSelectorDeathTest (gmx::test) | StringInputStream (gmx) |
| AtomRange | FloatOptionStorage (gmx) | IOptionsBehavior (gmx) |
| StringKeywordMatchItem (anonymous_namespace{sm_keywords.cpp}) |
| AtomsAdjacencyListElement | FloatTypeMatcher (gmx::test) | IOptionsContainer (gmx) | StringOption (gmx) |
| Awh (gmx) | ForceBuffers (gmx) | IOptionsContainerWithSections (gmx) | HardwareTopology::Package (gmx) | StringOptionInfo (gmx) |
| AwhEnergyBlock (gmx) | ForceBuffersView (gmx) | IOptionSectionStorage (gmx) | PackedJClusterList (gmx) | StringOptionStorage (gmx) |
| AwhParams (gmx) | ForceElement (gmx) | IOptionsFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp}) | PackHaloExternal | StringOutputStream (gmx) |
| AwhReader | ForceHelperBuffers | IOptionValueStore (gmx) | PackHaloInternal | StringTable |
| AwhTestParameters (gmx::test) | ForceOutputs (gmx) | IOutputAdapter (gmx) | PaddedVector (gmx) | StringTableBuilder |
|
| ForceProviderInput (gmx) | IProgramContext (gmx) | PaddedVectorTest (gmx::test) | StringTableEntry |
| ForceProviderOutput (gmx) | IRestraintPotential (gmx) | PaddingTraits (gmx::detail) | StringTestBase (gmx::test) |
| BalanceRegion | ForceProviders (gmx) | ISerializer (gmx) | PageAlignedAllocationPolicy (gmx) | StringToEnumValueConverter (gmx) |
| KeyValueTreeTransformRuleBuilder::Base (gmx) | ForceWithShiftForces (gmx) | ISignaller (gmx) | PairDistance (gmx::analysismodules::anonymous_namespace{pairdist.cpp}) | Subscriber (gmx::test::anonymous_namespace{observablesreducer.cpp}) |
| BaseEntry | ForceWithVirial (gmx) | ISimulator (gmx) | PairDistanceModuleData (gmx::analysismodules::anonymous_namespace{pairdist.cpp}) | ObservablesReducerBuilder::Impl::Subscription (gmx) |
| basic_mdspan (gmx) | ForeignLambdaTerms | ISimulatorElement (gmx) | PairDistValue (gmx) | SuccessListener (gmx::test::anonymous_namespace{testinit.cpp}) |
| BasicAverageHistogramModule (gmx::internal) | FormatFunctorForInt (gmx::test::anonymous_namespace{naming.cpp}) | isIntegralConstant (gmx) | pairHash (gmx) | SurfaceAreaCalculator (gmx) |
| BasicHistogramImpl (gmx::internal) | FormatterVariant (gmx::test::detail) | IsSerializableEnum (gmx) | PairlistParams (gmx) | swap_compartment |
| BasicVector (gmx) | FormatterVariant< Enum, typename std::enable_if_t< std::is_enum_v< Enum > > > (gmx::test::detail) | IsSerializableType (gmx) | PairlistSet (gmx) | swap_group |
| BenchmarkSystem (gmx) | FramePairManager (gmx::test) | IsTuple (gmx::test::detail) | PairlistSets (gmx) | SwapCoordinates (gmx) |
| BerendsenTemperatureCoupling (gmx) | FreeEnergyDispatch (gmx) | IsTuple< std::tuple< Ts...> > (gmx::test::detail) | PairSearch (gmx) | SynopsisFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp}) |
| Bias (gmx) | FreeEnergyParameterTest (gmx::test::anonymous_namespace{freeenergyparameters.cpp}) | IsVectorOfSerializableType (gmx::test::anonymous_namespace{checkpointdata.cpp}) | PairsearchWork (gmx) | SystemMomenta |
| BiasCoupledToSystem (gmx) | FreeEnergyParameterTestParameters (gmx::test::anonymous_namespace{freeenergyparameters.cpp}) | ITemperatureCouplingImpl (gmx) | ParallelConsistencyError (gmx) | SystemMomentum |
| BiasFepLambdaStateTest (gmx::test) | FreeEnergyPerturbationData (gmx) | TestValues::TestValueGenerator::Iterator (gmx::test::anonymous_namespace{checkpointdata.cpp}) | UniformRealDistribution::param_type (gmx) |
|
| BiasGrid (gmx) | FreeVolume (gmx::analysismodules::anonymous_namespace{freevolume.cpp}) | Range::iterator (gmx) | UniformIntDistribution::param_type (gmx) |
| BiasOutputSetup | FrictionMetricTest (gmx::test) | ITextBlockMatcher (gmx::test) | TabulatedNormalDistribution::param_type (gmx) | t_bb |
| BiasParams (gmx) | functor_wrapper (gmx) | ITextBlockMatcherSettings (gmx::test) | NormalDistribution::param_type (gmx) | t_compare_value |
| BiasState (gmx) |
| ITopologyHolderClient (gmx) | GammaDistribution::param_type (gmx) | t_compiler_data |
| BiasStateTest (gmx::test) | ITopologyProvider (gmx) | ExponentialDistribution::param_type (gmx) | t_conect (gmx::analysismodules::anonymous_namespace{sasa.cpp}) |
| BiasTest (gmx::test) | GammaDistribution (gmx) | ITrajectorySignallerClient (gmx) | ParameterizedMdrunTestFixture (gmx::test) | t_coordselection |
| BiasWriter (gmx) | GatherTest (gmx::test::anonymous_namespace{pmegathertest.cpp}) | ITrajectoryWriterClient (gmx) | nbnxn_atomdata_t::Params (gmx) | t_edflood (anonymous_namespace{edsam.cpp}) |
| BinaryInformationSettings (gmx) | GatherTestBody (gmx::test::anonymous_namespace{pmegathertest.cpp}) | IWrapper (gmx::anonymous_namespace{helpwritercontext.cpp}) | ParamsToFormatterVariants (gmx::test::detail) | t_edvecs (anonymous_namespace{edsam.cpp}) |
| bonded_threading_t | GaussianOn1DLattice (gmx) |
| ParamsToFormatterVariants< std::tuple< Ts...> > (gmx::test::detail) | t_eigvec (anonymous_namespace{edsam.cpp}) |
| BondedInteraction | GaussianSpreadKernelParameters (gmx) | ParrinelloRahmanBarostat (gmx) | t_filenm |
| BondedInteractionList | GaussTransform3D (gmx) | JClusterList (gmx) | PartialDeserializedTprFile | t_forcetable |
| BondedInteractionsTest (gmx::test) | Grid::Geometry (gmx) | AtomPairlist::JEntry (gmx) | partition | t_idef |
| BooleanOption (gmx) | GlobalCommandLineHelpContext (gmx) |
| PbcAiuc | t_ilist |
| BooleanOptionInfo (gmx) | GlobalCommunicationHelper (gmx) | PdbAtomEntry | t_interaction_function |
| BooleanOptionStorage (gmx) | gmx_ana_index_t | KernelInputParameters (gmx::test::anonymous_namespace{kernel_test.cpp}) | PeriodicActionsTest (gmx::test) | t_iparams |
| BoolType (gmx) | gmx_ana_indexgrps_t | KernelLaunchConfig | PerLambdaInformation (gmx::test::anonymous_namespace{expandedensemble.cpp}) | t_mapping |
| BoundingBox (gmx) | gmx_ana_indexmap_t | KernelOptions (gmx::test::anonymous_namespace{kernel_test.cpp}) | PhysicalNodeCommunicator (gmx) | t_matrix |
| BoundingBox1D (gmx) | gmx_ana_pos_t | KeyValueTreeBuilder (gmx) | PlanSetupData (gmx) | t_mdatoms |
| BoxDeformationHandle (gmx) | gmx_ana_poscalc_t | KeyValueTreeObjectArrayBuilder (gmx) | PlumedForceProvider (gmx) | t_methoddata_compare |
| BoxDeformationTest (gmx::test::anonymous_namespace{boxdeformation.cpp}) | gmx_ana_selcollection_t | KeyValueTreeObjectBuilder (gmx) | PlumedInputFilename (gmx) | t_methoddata_distance |
| TopologyHolder::Builder (gmx) | gmx_ana_selmethod_help_t | KeyValueTreePath (gmx) | PlumedMDModule (gmx::anonymous_namespace{plumedMDModule_stub.cpp}) | t_methoddata_kweval |
| BuildMDModulesNotifier (gmx) | gmx_ana_selmethod_t | KeyValueTreeTransformRuleBuilder (gmx) | PlumedMDModule (gmx::anonymous_namespace{plumedMDModule.cpp}) | t_methoddata_kwint |
| BuildMDModulesNotifier< CurrentCallParameter, CallParameter...> (gmx) | gmx_ana_selparam_t | KeyValueTreeTransformRulesScoped (gmx) | PlumedModuleInfo (gmx) | t_methoddata_kwreal |
| BuildMDModulesNotifier<> (gmx) | gmx_ana_selvalue_t | KeyValueTreeUniformArrayBuilder (gmx) | pme_setup_t | t_methoddata_kwstr (anonymous_namespace{sm_keywords.cpp}) |
|
| gmx_cache_protect_t (gmx) | KeyValueTreeValueBuilder (gmx) | PmeBSplineModuliTest (gmx::test::anonymous_namespace{pmebsplinetest.cpp}) | t_methoddata_pos |
| gmx_cmap_t | KeywordDetailsHelpTopic (gmx::anonymous_namespace{selhelp.cpp}) | PmeForceSenderGpu (gmx) | t_methoddata_same |
| HardwareTopology::Cache (gmx) | gmx_cmapdata_t | KeywordsHelpTopic (gmx::anonymous_namespace{selhelp.cpp}) | PmeGpu | t_nbparam |
| CacheLineAlignedFlag (gmx) | gmx_device_runtime_data_t |
| PmeGpuAtomParams | t_oriresdata |
| CalculateAcceptanceWeightSimple (gmx::test::anonymous_namespace{expanded.cpp}) | gmx_domdec_constraints_t | PmeGpuConstParams | t_pargs |
| CalcVerletBufferParameters (gmx) | gmx_domdec_specat_comm_t | LambdaInformation (gmx::test::anonymous_namespace{expandedensemble.cpp}) | PmeGpuDynamicParams | t_partition_item |
| cellInfo (gmx) | gmx_domdec_zone_size_t (gmx) | LangevinTest (gmx::test::anonymous_namespace{langevin.cpp}) | PmeGpuGridParams | t_pbc |
| ChainIdFiller | gmx_enerdata_t | LangevinTestParameters (gmx::test::anonymous_namespace{langevin.cpp}) | PmeGpuHaloExchange | t_pullcoord |
| CheckpointData (gmx) | gmx_enfrot | LastStepSignaller (gmx) | PmeGpuKernelParamsBase | t_register_method |
| CheckpointDataTest (gmx::test::anonymous_namespace{checkpointdata.cpp}) | gmx_enfrotgrp | layout_right (gmx) | PmeGpuProgram | t_state |
| CheckpointError (gmx) | gmx_ffparams_t | LeapFrogKernel | PmeGpuProgramImpl | t_swap |
| CheckpointHandler (gmx) | gmx_fft_fftpack | LeapFrogTest (gmx::test::anonymous_namespace{leapfrog.cpp}) | PmeGpuSettings | t_symbuf |
| CheckpointHeaderContents | gmx_fft_fftw3 | LeapFrogTestParameters (gmx::test::anonymous_namespace{leapfrog.cpp}) | PmeGpuSpecific | t_UmbrellaHeader |
| CheckpointHelper (gmx) | gmx_fft_mkl | LegacyEnumOption (gmx) | PmeGpuStaging | t_UmbrellaWindow |
| CheckpointHelperBuilder (gmx) | gmx_ga2la_t | LegacyInput (gmx) | PmeLoadBalanceHelper (gmx) | t_xpmelmt |
| CheckpointOptions (gmx) | gmx_help_make_index_group | LegacyMdrunOptions (gmx) | PmePpCommGpu (gmx) | TabulatedNormalDistribution (gmx) |
| cl_nbparam_params (gmx) | gmx_hw_opt_t | LegacySimulator (gmx) | PmeShared | Task (anonymous_namespace{lincs.cpp}) |
| ClfftInitializer (gmx) | gmx_kernel_timing_data_t | LegacySimulatorData (gmx) | PmeSolve | TemperatureCouplingData (gmx) |
| ClHandle (gmx) | gmx_localtop_t | LennardJonesCalculator (gmx) | PmeSolveKernel | TerminationHelper (gmx::test) |
| CMainCommandLineModule (gmx::anonymous_namespace{cmdlinemodulemanager.cpp}) | gmx_molblock_t | LennardJonesCalculator< calculateEnergies, InteractionModifiers::ForceSwitch > (gmx) | PmeTest (gmx::test::anonymous_namespace{pmetest.cpp}) | TestDevice (gmx::test) |
| TextTableFormatter::Impl::ColumnData (gmx) | gmx_moltype_t | LennardJonesCalculator< calculateEnergies, InteractionModifiers::PotSwitch > (gmx) | PointState (gmx) | TestException (gmx::test) |
| DomainCommBackward::ColumnInfo (gmx) | gmx_multisim_t | LennardJonesCalculator< false, InteractionModifiers::PotShift > (gmx) | GaussianSpreadKernelParameters::PositionAndAmplitude (gmx) | TestFileInputRedirector (gmx::test) |
| ColvarProxyGromacs (gmx) | gmx_nodecomm_t | LennardJonesCalculator< true, InteractionModifiers::PotShift > (gmx) | PositionCalculationCollection (gmx) | TestFileManager (gmx::test) |
| ColvarsForceProvider (gmx) | gmx_pme_comm_n_box_t | Lincs (gmx) | PotentialPointData (gmx) | TestFileOutputRedirector (gmx::test) |
| ColvarsForceProviderState (gmx) | gmx_pme_comm_vir_ene_t | LincsDeviations (gmx) | PpCommManager (gmx) | TestHardwareEnvironment (gmx::test) |
| ColvarsMDModule (gmx::anonymous_namespace{colvarsMDModule_stub.cpp}) | gmx_pme_pp | LincsGpu (gmx) | PpForceCommManager (gmx) | TestOptionsProvider (gmx::test) |
| ColvarsMDModule (gmx::anonymous_namespace{colvarsMDModule.cpp}) | gmx_potfit | LinkFrontier (gmx) | PpRanks | TestOptionsRegistry (gmx::test::anonymous_namespace{testoptions.cpp}) |
| ColvarsModuleInfo (gmx) | gmx_repl_ex | ListedForces | PpRanksSendFInfo | TestParticleInsertion (gmx) |
| ColvarsOptions (gmx) | gmx_reverse_top_t | ListInput (gmx::test::anonymous_namespace{pairs.cpp}) | PrefixFormatter (gmx::test) | TestProgramContext (gmx::test::anonymous_namespace{testinit.cpp}) |
| ColvarsPreProcessor (gmx) | gmx_sel_evaluate_t | ListInput (gmx::test::anonymous_namespace{freeenergykernel.cpp}) | PreprocessingAtomTypes | TestReferenceChecker (gmx::test) |
| ColvarsSimulationsParameters (gmx) | gmx_sel_lexer_t | ListOfLists (gmx) | PreprocessingBondAtomType | TestReferenceData (gmx::test) |
| COMInPlaceTest (gmx::test::anonymous_namespace{com.cpp}) | gmx_sel_mempool_block_t | LocalAtomSet (gmx) | PreprocessResidue | TestReferenceDataImpl (gmx::test::internal) |
| CommandLine (gmx::test) | gmx_sel_mempool_t | LocalAtomSetManager (gmx) | PrintReplicaExchangeParametersToString (gmx::test) | TestSystem (gmx::test) |
| CommandLineCommonOptionsHolder (gmx) | gmx_slabdata | LocalSettleData | ProcessFrameConversion (gmx) | TestSystem (gmx::test::anonymous_namespace{pmegathertest.cpp}) |
| CommandLineHelpContext (gmx) | gmx_sparsematrix | LocalTopologyChecker (gmx) | HardwareTopology::ProcessingUnit (gmx) | TestValues::TestValueGenerator (gmx::test::anonymous_namespace{checkpointdata.cpp}) |
| CommandLineHelpModule (gmx) | gmx_specatsend_t | LogEntryWriter (gmx) | Profiling (gmx) | TestValues (gmx::test::anonymous_namespace{checkpointdata.cpp}) |
| CommandLineHelpWriter (gmx) | gmx_tng_trajectory | LoggerBuilder (gmx) | Propagator (gmx) | TextFileMatch (gmx::test) |
| CommandLineModuleGroup (gmx) | gmx_wallclock_gpu_nbnxn_t | LoggerOwner (gmx) | PropagatorConnection (gmx) | TextInputFile (gmx) |
| CommandLineModuleGroupData (gmx) | gmx_wallclock_gpu_pme_t | LoggerTestHelper (gmx::test) | PropagatorTag (gmx) | TextInputStream (gmx) |
| CommandLineModuleManager (gmx) | gmx_walltime_accounting | LoggingSignaller (gmx) | PTCouplingArrays (gmx) | TextLineWrapper (gmx) |
| CommandLineModuleManagerTestBase (gmx::test) | Gpu3dFft (gmx) | HardwareTopology::LogicalProcessor (gmx) | pull_coord_work_t | TextLineWrapperSettings (gmx) |
| CommandLineModuleSettings (gmx) | GpuForceReduction (gmx) | CpuInfo::LogicalProcessor (gmx) | pull_group_work_t | TextOutputFile (gmx) |
| CommandLineParser (gmx) | GpuHaloExchange (gmx) | LogLevelHelper (gmx) | PullCoordExpressionParser (gmx) | TextOutputStream (gmx) |
| CommandLineProgramContext (gmx) | GpuPairlist (gmx) | LogWriteHelper (gmx) | DimParams::PullDimParams (gmx) | TextReader (gmx) |
| CommandLineTestBase (gmx::test) | GpuPairlistSorting (gmx) |
| PullElement (gmx) | TextReaderTest (gmx::test::anonymous_namespace{textreader.cpp}) |
| CommandLineTestHelper (gmx::test) | GpuRegionTimerImpl | PullIntegrationTest (gmx::test::anonymous_namespace{pull.cpp}) | TextReaderTestParams (gmx::test::anonymous_namespace{textreader.cpp}) |
| CommandsHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp}) | GpuRegionTimerWrapper | HardwareTopology::Machine (gmx) |
| TextTableFormatter (gmx) |
| CompileTimeStringJoin (gmx) | GpuTaskAssignments (gmx) | ManualOutputFile (gmx::test::anonymous_namespace{extract_cluster.cpp}) | TextWriter (gmx) |
| CompositeHelpTopic (gmx) | GpuTaskAssignmentsBuilder (gmx) | MappedUnionFinder (gmx) | QMInputFileName (gmx) | thread_work_t |
| CompositeSimulatorElement (gmx) | GpuTaskMapping (gmx) | layout_right::mapping (gmx) | QMMM (gmx::anonymous_namespace{qmmm.cpp}) | ThreadedForceBuffer (gmx) |
| ComputeDebyeScattering (gmx) | GpuTimers (gmx) | Matrix3x3ToString (gmx::test::anonymous_namespace{parrinellorahman.cpp}) | QMMMForceProvider (gmx) | ThreadForceBuffer (gmx) |
| ComputeGlobalsElement (gmx) | Grid (gmx) | MaxNumFrames (gmx::test) | QMMMInputGenerator (gmx) | ThreadingInfo (gmx) |
| ComSumContents | GridAxis (gmx) | MDAtoms (gmx) | QMMMModuleInfo (gmx) | ThreeFry2x64 (gmx) |
| ConfMatch (gmx::test) | GridConverter | MDLogger (gmx) | QMMMOptions (gmx) | ThreeFry2x64Fast (gmx) |
| Constraints (gmx) | GridDimensions (gmx) | MDModules (gmx) | QMMMOutputProvider (gmx::anonymous_namespace{qmmm.cpp}) | ThreeFry2x64General (gmx) |
| ConstraintsElement (gmx) | GridPoint (gmx) | MDModulesAtomsRedistributedSignal (gmx) | QMMMParameters (gmx) | ThrowLocation (gmx) |
| ConstraintsParam (gmx) | GridSet (gmx) | MDModulesCheckpointReadingBroadcast (gmx) | QMMMSimulationParameterSetup (gmx::anonymous_namespace{qmmm.cpp}) | TimeOptionScaler (gmx::anonymous_namespace{timeunitmanager.cpp}) |
| ConstraintsTest (gmx::test::anonymous_namespace{constr.cpp}) | GridSetData (gmx) | MDModulesCheckpointReadingDataOnMain (gmx) | QMMMTopologyInfo (gmx) | TimeStep (gmx) |
| ConstraintsVerifier (gmx::test::anonymous_namespace{constr.cpp}) | GridWork (gmx) | MDModulesEnergyOutputToDensityFittingRequestChecker (gmx) | QMMMTopologyPreprocessor (gmx) | TimeUnitBehavior (gmx) |
| ContinuationFramePairManager (gmx::test::anonymous_namespace{exactcontinuation.cpp}) | GromacsException (gmx) | MDModulesEnergyOutputToNNPotRequestChecker (gmx) | QuadraticSplineTable (gmx) | TimeUnitManager (gmx) |
| ConvertTprInfo (gmx) | GromppMtsOpts (gmx) | MDModulesEnergyOutputToQMMMRequestChecker (gmx) |
| TimingOptions (gmx) |
| ConvertTprNoVelocityTest (gmx::test::anonymous_namespace{convert-tpr-fixture.h}) | GromppTest (anonymous_namespace{grompp.cpp}) | MDModulesNotifier (gmx) | TimingTest (gmx::test::anonymous_namespace{timing.cpp}) |
| CorrelationBlockData::CoordData (gmx) | OptionSectionImpl::Group (gmx::internal) | MDModulesNotifiers (gmx) | Range (gmx) | ToleranceError (gmx) |
| CoordinatesAndBoxPreprocessed (gmx) | GyrateModuleTest (gmx::test) | MDModulesWriteCheckpointData (gmx) | RangeError (gmx) | KeyValueTreeTransformRuleBuilder::ToObject (gmx) |
| CoordState (gmx) |
| MdrunCompressedXOutputTest (anonymous_namespace{compressed_x_output.cpp}) | RangePartitioning (gmx) | TopologyData (gmx) |
| HardwareTopology::Core (gmx) | MdRunInputFilename (gmx) | ObservablesReducerIntegrationTest::RankData (gmx::test::anonymous_namespace{observablesreducer.cpp}) | TopologyHolder (gmx) |
| BoundingBox::Corner (gmx) | H5md (gmx) | Mdrunner (gmx) | Rdf (gmx::analysismodules::anonymous_namespace{rdf.cpp}) | TopologyInformation (gmx) |
| DispersionCorrection::Correction | H5mdCloser (gmx) | MdrunnerBuilder (gmx) | RdfModuleData (gmx::analysismodules::anonymous_namespace{rdf.cpp}) | TopologyManager (gmx::test) |
| CorrelationBlockData (gmx) | HaloExchange (gmx) | MdrunNoAppendContinuationIsExact (gmx::test::anonymous_namespace{exactcontinuation.cpp}) | ReadCheckpointDataHolder (gmx) | TorchModel (gmx) |
| CorrelationGrid (gmx) | HaloMpiRequests (gmx) | MdrunOptions (gmx) | RealFunctionvalueAtCoordinate (gmx) | KeyValueTreeTransformRuleBuilder::ToValue (gmx) |
| CorrelationTensor (gmx) | HardwareTopology (gmx) | MdrunRerunTest (gmx::test::anonymous_namespace{rerun.cpp}) | ReduceKernel | TpiTest (gmx::test::anonymous_namespace{tpitest.cpp}) |
| CoulombCalculator (gmx) | HashAnArray (anonymous_namespace{device_management_common.cpp}) | MdrunTestFixture (gmx::test) | RefDataFilenameMaker (gmx::test) | TprAndFileManager (gmx::test) |
| CoulombCalculator< KernelCoulombType::EwaldAnalytical > (gmx) | HashedMap (gmx) | MdrunTestFixtureBase (gmx::test) | ReferenceFileNames (gmx::test) | TpxFileHeader |
| CoulombCalculator< KernelCoulombType::EwaldTabulated > (gmx) | HbondModuleTest (gmx::test) | MembedHolder (gmx) | StatePropagatorData::ReferenceTemperatureHelper (gmx) | TrajectoryAnalysisCommandLineRunner (gmx) |
| CoulombCalculator< KernelCoulombType::RF > (gmx) | HbondStorage (gmx::analysismodules::anonymous_namespace{hbond.cpp}) | MempoolGroupReserver (anonymous_namespace{evaluate.cpp}) | ReferenceTemperatureManager (gmx) | TrajectoryAnalysisModule (gmx) |
| CpuInfo (gmx) | HbondStorageFrame (gmx::analysismodules::anonymous_namespace{hbond.cpp}) | MempoolSelelemReserver (anonymous_namespace{evaluate.cpp}) | RepeatingOptionSection (gmx) | TrajectoryAnalysisModuleData (gmx) |
| Constraints::CreationHelper (gmx) | HelpExportCompletion (gmx::anonymous_namespace{cmdlinehelpmodule.cpp}) | MessageStringCollector (gmx) | RepeatingOptionSectionHandle (gmx) | TrajectoryAnalysisModuleDataBasic (gmx::anonymous_namespace{analysismodule.cpp}) |
| CromerMannParameters (gmx) | HelpExportReStructuredText (gmx::anonymous_namespace{cmdlinehelpmodule.cpp}) | MessageStringContext (gmx) | RepeatingOptionSectionStorage (gmx) | TrajectoryAnalysisModuleTestFixture (gmx::test) |
| CrossCorrelationEvaluationHelperValues (gmx::anonymous_namespace{densityfit.cpp}) | HelpLinks (gmx) | MessageWriterFileNoThrow (gmx::anonymous_namespace{exceptions.cpp}) | ReplicaExchangeParameters | TrajectoryAnalysisRunnerCommon (gmx) |
| CrossCorrelationGradientAtVoxel (gmx::anonymous_namespace{densityfit.cpp}) | HelpManager (gmx) | MessageWriterString (gmx::anonymous_namespace{exceptions.cpp}) | SelectionOptionManager::Impl::RequestsClearer (gmx) | TrajectoryAnalysisSettings (gmx) |
| CrystallographicLabels (gmx) | HelpWriterContext (gmx) | MessageWriterTextWriter (gmx::anonymous_namespace{exceptions.cpp}) | RequireEvenRankCountWithAtLeastFourRanks (gmx::test::anonymous_namespace{threadaffinity_mpi.cpp}) | TrajectoryComparison (gmx::test) |
| CubicSplineTable (gmx) | HistogramSize (gmx) | methoddata_insolidangle | RequireMinimumRankCount (gmx::test) | TrajectoryElement (gmx) |
|
| history_t | methoddata_merge | RequireRankCount (gmx::test) | TrajectoryElementBuilder (gmx) |
| HostAllocationPolicy (gmx) | methoddata_permute | ResetHandler (gmx) | TrajectoryFileOpener (gmx) |
| DataFileFinder (gmx) | HostAllocatorTest (gmx::test) | MimicCommunicator (gmx) | ResInfo (gmx::analysismodules::anonymous_namespace{dssp.cpp}) | TrajectoryFrame (gmx) |
| DataFileInfo (gmx) | HostAllocatorTestNoMem (gmx::test) | MimicTest (gmx::test) | RestraintForceProvider (gmx) | TrajectoryFrameMatchSettings (gmx::test) |
| DataFileOptions (gmx) | HostAllocatorTestNoMemCopyable (gmx::test) | MindistAction (gmx::anonymous_namespace{nbsearch.cpp}) | RestraintManager (gmx) | TrajectoryFrameReader (gmx::test) |
| DataStorageRequester (gmx::test::anonymous_namespace{mock_datamodule.cpp}) | HostInteractionList (gmx) | MissingElementConnectionError (gmx) | RestraintMDModule (gmx) | TrajectoryFrameWriter (gmx) |
| dd_corners_t | HostMemoryTest (gmx::test) | MockAverageHistogram (gmx::test::anonymous_namespace{histogram.cpp}) | RestraintMDModuleImpl (gmx) | TrajectoryFrameWriterTest (gmx::test) |
| DDBalanceRegionHandler |
| MockHardwareTopologyTest (gmx::test::anonymous_namespace{mockhardwaretopology.cpp}) | ReverseTopOptions | TrajectorySignaller (gmx) |
| DDGridSetup | MockModule (gmx::test) | RocfftInitializer (gmx) | TrajectoryTolerances (gmx::test) |
| DefaultExecutableEnvironment (gmx::anonymous_namespace{cmdlineprogramcontext.cpp}) | IAnalysisDataModule (gmx) | MockOption (gmx::test::anonymous_namespace{abstractoptionstorage.cpp}) | RocfftPlan (gmx) | TranslateAndScale (gmx) |
| DefaultInitializationAllocator (gmx) | ICheckpointHelperClient (gmx) | MockOptionsModule (gmx::test) | RootHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp}) |
|
| DefaultInputRedirector (gmx::anonymous_namespace{fileredirector.cpp}) | NbnxmPairlistCpuWork::IClusterData (gmx) | MockOptionStorage (gmx::test::anonymous_namespace{abstractoptionstorage.cpp}) | RotationTest (gmx::test::anonymous_namespace{pull_rotation.cpp}) |
| DefaultOutputRedirector (gmx::anonymous_namespace{fileredirector.cpp}) | ICommandLineModule (gmx) | ModularSimulator (gmx) | RstParagraphIterator (gmx) | UmbrellaOptions |
| DefaultProgramContext (gmx::anonymous_namespace{programcontext.cpp}) | ICommandLineOptionsModule (gmx) | ModularSimulatorAlgorithm (gmx) | RVecMatcher (gmx::test) | UniformIntDistribution (gmx) |
| DensityFitting (gmx::anonymous_namespace{densityfitting.cpp}) | ICommandLineOptionsModuleSettings (gmx) | ModularSimulatorAlgorithmBuilder (gmx) |
| UniformRealDistribution (gmx) |
| DensityFittingAmplitudeLookup (gmx) | IdentityFormatter (gmx) | ModularSimulatorAlgorithmBuilderHelper (gmx) | UnionFinder (gmx) |
| DensityFittingForce (gmx) | IDomDecHelperClient (gmx) | ModularSimulatorError (gmx) | SansDebye (gmx) | UnitCellInfo |
| DensityFittingForceProvider (gmx) | IEnergyAnalysis (gmx) | ModuleHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp}) | Sasa (gmx::analysismodules::anonymous_namespace{sasa.cpp}) | UnpackAndAddHaloInternal |
| DensityFittingForceProviderState (gmx) | IEnergySignallerClient (gmx) | AnalysisDataModuleManager::Impl::ModuleInfo (gmx) | SasaModuleData (gmx::analysismodules::anonymous_namespace{sasa.cpp}) | UnpackHaloExternal |
| DensityFittingModuleInfo (gmx) | AtomPairlist::IEntry (gmx) | ModuleSelection (gmx::test) | SaxsDebye (gmx) | Update (gmx) |
| DensityFittingOptions (gmx) | IExceptionInfo (gmx::internal) | ModuleTest (gmx::test) | ScalarDataTypes (gmx) | UpdateGroups (gmx) |
| DensityFittingOutputProvider (gmx) | IExecutableEnvironment (gmx) | MolecularTopologyAtomIndices | ScalingMatrix (gmx) | UpdateGroupsCog (gmx) |
| DensityFittingParameters (gmx) | IFileInputRedirector (gmx) | MoleculeBlockIndices | ScatteringModule (gmx::test::anonymous_namespace{scattering.cpp}) | UpdateGroupsTest (gmx::test::anonymous_namespace{updategroups.cpp}) |
| DensityFittingSimulationParameterSetup (gmx::anonymous_namespace{densityfitting.cpp}) | IFileMatcher (gmx::test) | MoleculeData (gmx::analysismodules::anonymous_namespace{msd.cpp}) | SearchCycleCounting (gmx) | UserInputError (gmx) |
| DensityFittingTest (gmx::test) | IFileMatcherSettings (gmx::test) | MoleculeInformation | SecondaryStructures (gmx::analysismodules::anonymous_namespace{dssp.cpp}) | UserInputTest (gmx::test) |
| DensitySimilarityCrossCorrelation (gmx::anonymous_namespace{densityfit.cpp}) | IFileOutputRedirector (gmx) | MoleculePatch | SecondaryStructuresData (gmx::analysismodules::anonymous_namespace{dssp.cpp}) |
|
| DensitySimilarityInnerProduct (gmx::anonymous_namespace{densityfit.cpp}) | IForceProvider (gmx) | MoleculePatchDatabase | Selection (gmx) |
| DensitySimilarityMeasure (gmx) | IFrameConverter (gmx) | MoleculeType | SelectionCollection (gmx) | VelocityScalingTemperatureCoupling (gmx) |
| DensitySimilarityRelativeEntropy (gmx::anonymous_namespace{densityfit.cpp}) | IHelpExport (gmx::anonymous_namespace{cmdlinehelpmodule.cpp}) | MrcDataStatistics (gmx) | SelectionData (gmx::internal) | VirtualSiteTest::VirtualSite (gmx::test::anonymous_namespace{virtualsites.cpp}) |
| DevelopmentFeatureFlags (gmx) | IHelpTopic (gmx) | MrcDensityMapHeader (gmx) | SelectionEvaluator (gmx) | VirtualSiteTopology::VirtualSiteAngle |
| HardwareTopology::Device (gmx) | IKeyValueTreeTransformRules (gmx) | MrcDensityMapOfFloatFromFileReader (gmx) | SelectionFileOption (gmx) | VirtualSiteTopology::VirtualSiteBond |
| DeviceDetectionResult (gmx) | ILastStepSignallerClient (gmx) | MrcDensityMapOfFloatReader (gmx) | SelectionFileOptionInfo (gmx) | VirtualSiteConfiguration |
| DeviceInformation | ilist_data_t | MrcDensityMapOfFloatWriter (gmx) | SelectionFileOptionStorage (gmx) | VirtualSitesHandler (gmx) |
| DeviceStream | iListInput (gmx::test::anonymous_namespace{bonded.cpp}) | MrcDensitySkewData (gmx) | SelectionLocation (gmx) | VirtualSiteTopology |
| DeviceStreamManager (gmx) | IListIterator | Msd (gmx::analysismodules) | SelectionOption (gmx) | VRescaleTemperatureCoupling (gmx) |
| DeviceStreamManagerTest (gmx::test::anonymous_namespace{device_stream_manager.cpp}) | IListProxy | MsdData::MsdColumnProxy (gmx::analysismodules::anonymous_namespace{msd.cpp}) | SelectionOptionBehavior (gmx) | VsiteAtomMapping |
| df_history_t | IListRange | MsdCoordinateManager (gmx::analysismodules::anonymous_namespace{msd.cpp}) | SelectionOptionInfo (gmx) | VsiteBondedInteraction |
| DiagonalMasker (gmx) | ILoggingSignallerClient (gmx) | MsdData (gmx::analysismodules::anonymous_namespace{msd.cpp}) | SelectionOptionManager (gmx) | VsiteBondParameter |
| DiagonalMasker< nR, kernelLayout, KernelLayoutClusterRatio::JSizeEqualsISize > (gmx) | ILogTarget (gmx) | MsdGroupData (gmx::analysismodules::anonymous_namespace{msd.cpp}) | SelectionOptionStorage (gmx) | VsiteThread (gmx) |
| DiagonalMasker< nR, kernelLayout, KernelLayoutClusterRatio::JSizeIsDoubleISize > (gmx) | IMDEnergyBlock (gmx) | MsdMatcher (gmx::test::anonymous_namespace{msd.cpp}) | SelectionParserParameter (gmx) | VsiteTypeAndSign |
| DiagonalMasker< nR, kernelLayout, KernelLayoutClusterRatio::JSizeIsHalfISize > (gmx) | IMDHeader (gmx) | MtsLevel (gmx) | SelectionParserSymbol (gmx) |
|
| DimParams (gmx) | IMDModule (gmx) | MttkBoxScaling (gmx) | SelectionParserSymbolIterator (gmx) |
| DipoleData (gmx) | ImdOptions (gmx) | MttkData (gmx) | SelectionParserSymbolTable (gmx) | wallcc_t |
| DirectoryEnumerator (gmx) | IMDOutputProvider (gmx) | MttkElement (gmx) | SelectionParserValue (gmx) | WarningHandler |
| DistanceCalculationInfo (gmx::anonymous_namespace{domainpaircomm.cpp}) | IMdpOptionProvider (gmx) | MttkPropagatorConnection (gmx) | SelectionPosition (gmx) | WaterMolecule |
| DistancesSquared (gmx::anonymous_namespace{domainpaircomm.cpp}) | IMDSocket (gmx) | MttkPropagatorConnectionDetails (gmx) | SelectionOptionManager::Impl::SelectionRequest (gmx) | WholeMoleculeTransform (gmx) |
| AtomDistribution::DomainAtomGroups | IMessageWriter (gmx::anonymous_namespace{exceptions.cpp}) | MultiDimArray (gmx) | SelectionTopologyProperties (gmx) | WorkDivision |
| DomainCommBackward (gmx) | Update::Impl | MultiSimTest (gmx::test) | SelectionTreeElement (gmx) | WrapperToString (gmx::anonymous_namespace{helpwritercontext.cpp}) |
| DomainCommForward (gmx) | gmx_reverse_top_t::Impl |
| SelelemTemporaryValueAssigner (anonymous_namespace{evaluate.cpp}) | WrapperToVector (gmx::anonymous_namespace{helpwritercontext.cpp}) |
| DomainDecompositionBuilder (gmx) | VirtualSitesHandler::Impl (gmx) | SelMethodEvalContext (gmx) | WriteCheckpointDataHolder (gmx) |
| DomainInfo (gmx) | UpdateConstrainGpu::Impl (gmx) | NameOfTestFromTuple (gmx::test) | SeparatePmeRanksPermitted (gmx) |
|
| DomainLifetimeWorkload (gmx) | TrajectoryAnalysisSettings::Impl (gmx) | NBAtomDataGpu (gmx) | SetAtoms (gmx) |
| DomainPairComm (gmx) | TrajectoryAnalysisModuleData::Impl (gmx) | NbnxmGpu (gmx) | SetAtomsSupportedFiles (gmx::test) | GpuTimers::XFTransfers (gmx) |
| GridSet::DomainSetup (gmx) | TrajectoryAnalysisModule::Impl (gmx) | NbnxmKernel (gmx) | SetAtomsTest (gmx::test) | XvgMatch (gmx::test) |
| DomDecHelper (gmx) | TextTableFormatter::Impl (gmx) | NbnxmKernelBenchOptions (gmx) | SetAtomsUnSupportedFiles (gmx::test) |
|
| DomDecHelperBuilder (gmx) | TextReader::Impl (gmx) | NbnxmKernelPruneOnly (gmx) | SetBothTimeTest (gmx::test) |
| DomdecOptions (gmx) | TestReferenceChecker::Impl (gmx::test) | NbnxmKernelTest (gmx::test::anonymous_namespace{kernel_test.cpp}) | SetBox (gmx) | ZoneCorners (gmx::anonymous_namespace{domainpaircomm.cpp}) |
| DomDecSpecialCasesTest (anonymous_namespace{domain_decomposition.cpp}) | TestFileManager::Impl (gmx::test) | NbnxmPairlistCpuWork (gmx) | SetForces (gmx) | |
| | | | |
1.8.5
