Gromacs  2025-dev-20240412-700e594
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Groups Pages
Class Index
A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X
  A  
DomDecHelper (gmx)   MockAnalysisDataModule::Impl (gmx::test)   nbnxn_atomdata_t   SetTimeStep (gmx)   
DomDecHelperBuilder (gmx)   SelectionParserSymbolTable::Impl (gmx)   nbnxn_ci_t   SetTimeStepTest (gmx::test)   
AbstractAnalysisArrayData (gmx)   DomdecOptions (gmx)   SelectionParserSymbolIterator::Impl (gmx)   nbnxn_cj_packed_t   SettleData (gmx)   
AbstractAnalysisData (gmx)   DomDecSpecialCasesTest (anonymous_namespace{domain_decomposition.cpp})   SelectionParserSymbol::Impl (gmx)   nbnxn_cj_t   SettleGpu (gmx)   
AbstractAverageHistogram (gmx)   DoubleOption (gmx)   SelectionOptionManager::Impl (gmx)   nbnxn_cycle_t   SettleTest (gmx::test::anonymous_namespace{settle.cpp})   
AbstractCompositeHelpTopic (gmx)   DoubleOptionInfo (gmx)   SelectionCollection::Impl (gmx)   nbnxn_excl_t   SettleTestParameters (gmx::test::anonymous_namespace{settle.cpp})   
AbstractOption (gmx)   DoubleOptionStorage (gmx)   RestraintManager::Impl (gmx)   nbnxn_im_ei_t   SettleWaterTopology   
AbstractOptionSection (gmx)   DsspModuleTest (gmx::test::anonymous_namespace{dssp.cpp})   PositionCalculationCollection::Impl (gmx)   nbnxn_sci   SetVelocities (gmx)   
AbstractOptionSectionHandle (gmx)   DsspStorage (gmx::analysismodules::anonymous_namespace{dssp.cpp})   PmePpCommGpu::Impl (gmx)   NbnxnPairlistCpu   SetVelocitySupportedFiles (gmx::test)   
AbstractOptionStorage (gmx)   DsspStorageFrame (gmx::analysismodules::anonymous_namespace{dssp.cpp})   PmeForceSenderGpu::Impl (gmx)   NbnxnPairlistCpuWork   SetVelocityUnSupportedFiles (gmx::test)   
AbstractPlotModule (gmx)   
  E  
PmeCoordinateReceiverGpu::Impl (gmx)   NBParamGpu   shakedata (gmx)   
AbstractSimpleHelpTopic (gmx)   OptionsAssigner::Impl (gmx)   NBStagingData   ShakeTest (gmx::anonymous_namespace{shake.cpp})   
AbstractTrajectoryAnalysisModuleTestFixture (gmx::test)   EdrOutputFilename (gmx)   ObservablesReducerBuilder::Impl (gmx)   NeighborSearchSignaller (gmx)   GaussianSpreadKernelParameters::Shape (gmx)   
accessor_basic (gmx)   ekinstate_t   ObservablesReducer::Impl (gmx)   NelderMeadParameters (gmx::anonymous_namespace{neldermead.cpp})   HelpWriterContext::Impl::SharedState (gmx)   
AffineTransformation (gmx)   ElectricField (gmx::anonymous_namespace{electricfield.cpp})   MrcDensityMapOfFloatWriter::Impl (gmx)   NelderMeadSimplex (gmx)   SignallerBuilder (gmx)   
KeyValueTreeTransformRuleBuilder::AfterFrom (gmx)   ElectricFieldDimension (gmx::anonymous_namespace{electricfield.cpp})   MrcDensityMapOfFloatReader::Impl (gmx)   no_delete (gmx)   SignalTest (gmx::test)   
AlignedAllocationPolicy (gmx)   StatePropagatorData::Element (gmx)   MdGpuGraph::Impl (gmx)   BuildMDModulesNotifier<>::NoCallParameter (gmx)   Simd4DBool (gmx)   
AlignedArray< double, N > (gmx)   FreeEnergyPerturbationData::Element (gmx)   LocalTopologyChecker::Impl (gmx)   NoContentsMatch (gmx::test)   Simd4Double (gmx)   
AlignedArray< float, N > (gmx)   EnergyData::Element (gmx)   LocalAtomSetManager::Impl (gmx)   nonbonded_verlet_t   Simd4FBool (gmx)   
Allocator (gmx)   ElementNotFoundError (gmx)   ListedForcesGpu::Impl (gmx)   NonbondedBenchmarkInfo (gmx)   Simd4Float (gmx)   
AllocatorTest (gmx::test)   em_state   ImdSession::Impl (gmx)   NoOptionalOutput (gmx::test)   SimdArrayRef (gmx::internal)   
AllowAnyRankCount (gmx::test)   EnergyAccumulator (gmx)   HelpWriterContext::Impl (gmx)   NormalDistribution (gmx)   SimdBaseTest (gmx::test)   
AllVsiteBondedInteractions   EnergyAccumulator< false, true > (gmx)   HelpManager::Impl (gmx)   NormalModesTest (gmx::test::anonymous_namespace{normalmodes.cpp})   SimdDBool (gmx)   
AmdPackedFloat3   EnergyAccumulator< true, true > (gmx)   HelpLinks::Impl (gmx)   NoseHooverChainsData (gmx)   SimdDIBool (gmx)   
AnalysisArrayData (gmx)   EnergyAccumulator< useEnergyGroups, false > (gmx)   GpuHaloExchange::Impl (gmx)   NoseHooverChainsElement (gmx)   SimdDInt32 (gmx)   
AnalysisData (gmx)   EnergyAccumulatorGetter (gmx::anonymous_namespace{simd_kernel.h})   Gpu3dFft::ImplSyclVkfft::Impl (gmx)   NoseHooverGroup (gmx)   SimdDInt32Tag (gmx)   
AnalysisDataAverageModule (gmx)   EnergyAccumulatorGetter< false, false > (gmx::anonymous_namespace{simd_kernel.h})   Gpu3dFft::ImplSyclRocfft::Impl (gmx)   NoseHooverTemperatureCoupling (gmx)   SimdDouble (gmx)   
AnalysisDataBinAverageModule (gmx)   EnergyAccumulatorGetter< false, true > (gmx::anonymous_namespace{simd_kernel.h})   Gpu3dFft::ImplOclVkfft::Impl (gmx)   not_null (gmx::compat)   SimdDoubleTag (gmx)   
AnalysisDataDisplacementModule (gmx)   EnergyAccumulatorGetter< true, true > (gmx::anonymous_namespace{simd_kernel.h})   Gpu3dFft::Impl (gmx)   NoTextMatch (gmx::test)   SimdFBool (gmx)   
AnalysisDataFrameAverageModule (gmx)   EnergyAnalysisFrame (gmx)   GaussTransform3D::Impl (gmx)   NotImplementedError (gmx)   SimdFIBool (gmx)   
AnalysisDataFrameAverager (gmx)   EnergyCalculationFrequencyErrors (gmx)   FileNameOptionManager::Impl (gmx)   HardwareTopology::Numa (gmx)   SimdFInt32 (gmx)   
AnalysisDataFrameHeader (gmx)   EnergyComparison (gmx::test)   DomainDecompositionBuilder::Impl (gmx)   HardwareTopology::NumaNode (gmx)   SimdFInt32Tag (gmx)   
AnalysisDataFrameLocalData (gmx)   EnergyData (gmx)   DeviceStreamManager::Impl (gmx)   NumericalSplineTableInput (gmx)   SimdFloat (gmx)   
AnalysisDataFrameLocalDataHandle (gmx)   EnergyDriftTracker (gmx)   DensityFittingForce::Impl (gmx)   NumPmeDomains   SimdFloatTag (gmx)   
AnalysisDataFrameLocalDataSetHandle (gmx)   EnergyEvaluator (anonymous_namespace{minimize.cpp})   CommandLineParser::Impl (gmx)   NumRanksPerSimulation (gmx::test)   nbnxn_atomdata_t::SimdMasks   
AnalysisDataFrameRef (gmx)   EnergyFrame (gmx)   CommandLineModuleManager::Impl (gmx)   
  O  
SimdSetZeroProxy (gmx)   
AnalysisDataHandle (gmx)   EnergyFrameReader (gmx::test)   CommandLineHelpWriter::Impl (gmx)   SimdTraits (gmx::internal)   
AnalysisDataHandleImpl (gmx::internal)   EnergyFunctionProperties (Nbnxm)   CommandLineHelpContext::Impl (gmx)   ObservablesHistory   SimpleHelpTopic (gmx)   
AnalysisDataLifetimeModule (gmx)   EnergyGroupsPerCluster (gmx)   AnalysisDataWeightedHistogramModule::Impl (gmx)   ObservablesReducer (gmx)   SimpleMdrunTest (gmx::test::anonymous_namespace{simple_mdrun.cpp})   
AnalysisDataModuleManager (gmx)   EnergyMinimizationTest (gmx::test::anonymous_namespace{minimize.cpp})   AnalysisDataSimpleHistogramModule::Impl (gmx)   ObservablesReducerBuilder (gmx)   SimulationAlgorithmSetupError (gmx)   
AnalysisDataModuleParallel (gmx)   EnergyNameUnit (gmx)   AnalysisDataModuleManager::Impl (gmx)   ObservablesReducerIntegrationTest (gmx::test::anonymous_namespace{observablesreducer.cpp})   SimulationContext (gmx)   
AnalysisDataModuleSerial (gmx)   EnergyOutputTest (gmx::test::anonymous_namespace{energyoutput.cpp})   AnalysisDataLifetimeModule::Impl (gmx)   ObsoleteToolModule (anonymous_namespace{legacymodules.cpp})   SimulationGroups   
AnalysisDataParallelOptions (gmx)   EnergyOutputTestParameters (gmx::test::anonymous_namespace{energyoutput.cpp})   AnalysisDataDisplacementModule::Impl (gmx)   Offset (gmx)   SimulationInputHandle (gmx)   
AnalysisDataPlotModule (gmx)   EnergySignaller (gmx)   AnalysisData::Impl (gmx)   omp_module_nthreads_t   SimulationInputHandleImplDeleter (gmx::detail)   
AnalysisDataPlotSettings (gmx)   EnergyTerm (gmx)   AbstractCompositeHelpTopic::Impl (gmx)   OpenClTraits (gmx)   SimulationInstabilityError (gmx)   
AnalysisDataPointSetRef (gmx)   EnsembleTemperature (gmx)   AbstractAnalysisData::Impl (gmx)   OpenClTraits< cl_command_queue > (gmx)   SimulationParticle   
AnalysisDataProxy (gmx)   gmx_ga2la_t::Entry   ExclusionChecker::Impl   OpenClTraits< cl_context > (gmx)   SimulationRunner (gmx::test)   
AnalysisDataSimpleHistogramModule (gmx)   EnumerationArray (gmx)   BalanceRegion::Impl   OpenClTraits< cl_kernel > (gmx)   SimulationSignal (gmx)   
AnalysisDataStorage (gmx)   EnumerationIterator (gmx)   AtomProperties::Impl   OpenClTraits< cl_program > (gmx)   SimulationSignaller (gmx)   
AnalysisDataStorageFrame (gmx)   EnumerationWrapper (gmx)   Gpu3dFft::ImplCuFft (gmx)   OpenClTraitsBase (gmx)   SimulationTimeStep (gmx)   
AnalysisDataStorageFrameData (gmx::internal)   EnumIndexStore (gmx::internal)   Gpu3dFft::ImplCuFftMp (gmx)   OptimisationResult (gmx)   SimulationWorkload (gmx)   
AnalysisDataStorageImpl (gmx::internal)   EnumOption (gmx)   Gpu3dFft::ImplOcl (gmx)   OptionInfo (gmx)   SimulatorBuilder (gmx)   
AnalysisDataTestFixture (gmx::test)   EnumOptionInfo (gmx)   Gpu3dFft::ImplOclVkfft (gmx)   OptionManagerContainer (gmx)   SimulatorConfig (gmx)   
AnalysisDataTestInput (gmx::test)   EnumOptionStorage (gmx)   Gpu3dFft::ImplSycl (gmx)   Options (gmx)   SimulatorEnv (gmx)   
AnalysisDataTestInputFrame (gmx::test)   EqualCaseInsensitive (gmx)   Gpu3dFft::ImplSyclBbfft (gmx)   OptionsAdapter (gmx::anonymous_namespace{pargs.cpp})   SimulatorStateData (gmx)   
AnalysisDataTestInputPointSet (gmx::test)   ErrorMessage (gmx::anonymous_namespace{exceptions.cpp})   Gpu3dFft::ImplSyclMkl (gmx)   OptionsAssigner (gmx)   SingleRankChecker (anonymous_namespace{resourcedivision.cpp})   
AnalysisDataValue (gmx)   EwaldBoxZScaler   Gpu3dFft::ImplSyclRocfft (gmx)   OptionsBehaviorCollection (gmx)   Site (gmx)   
AnalysisDataVectorPlotModule (gmx)   EwaldSurfaceTermTest (gmx::test::anonymous_namespace{ewaldsurfaceterm.cpp})   Gpu3dFft::ImplSyclVkfft (gmx)   OptionSection (gmx)   SolveKernelParams   
AnalysisDataWeightedHistogramModule (gmx)   ExactTextMatch (gmx::test)   InconsistentInputError (gmx)   OptionSectionHandle (gmx)   SolveTest (gmx::test::anonymous_namespace{pmesolvetest.cpp})   
AnalysisHistogramSettings (gmx)   ExceptionInfo (gmx)   IndexBlockTest (anonymous_namespace{indexutil.cpp})   OptionSectionImpl (gmx::internal)   SolveTestBody (gmx::test::anonymous_namespace{pmesolvetest.cpp})   
AnalysisHistogramSettingsInitializer (gmx)   ExceptionInitializer (gmx)   IndexFileWriterModule (gmx::analysismodules::anonymous_namespace{select.cpp})   OptionsFilter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp})   sort_along_vec_t   
AnalysisNeighborhood (gmx)   ExclusionBlock (gmx)   IndexGroup   OptionsImpl (gmx::internal)   spheresurfacebin   
AnalysisNeighborhoodPair (gmx)   ExpandedEnsembleElement (gmx)   IndexGroupsAndNames (gmx)   OptionsIterator (gmx)   SplineAndSpreadTest (gmx::test::anonymous_namespace{pmesplinespreadtest.cpp})   
AnalysisNeighborhoodPairSearch (gmx)   ExponentialDistribution (gmx)   INeighborSearchSignallerClient (gmx)   OptionsListFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp})   SplineAndSpreadTestBody (gmx::test::anonymous_namespace{pmesplinespreadtest.cpp})   
AnalysisNeighborhoodPositions (gmx)   ExponentialMovingAverage (gmx)   InitialConstraintsTest (gmx::test::anonymous_namespace{initialconstraints.cpp})   OptionsModifyingIterator (gmx)   SplineData (gmx::test::anonymous_namespace{pmegathertest.cpp})   
AnalysisNeighborhoodSearch (gmx)   ExponentialMovingAverageState (gmx)   InstallationPrefixInfo (gmx)   OptionsModifyingTypeVisitor (gmx)   SplineTableTest (gmx::test::anonymous_namespace{splinetable.cpp})   
AnalysisTemplate   extents (gmx)   Int64Option (gmx)   OptionsModifyingVisitor (gmx)   StandardInputStream (gmx)   
AnalyticalSplineTableInput (gmx)   extents_analyse< 0 > (gmx::detail)   Int64OptionInfo (gmx)   OptionStorageTemplate (gmx)   StartingBehaviorHandler (gmx::anonymous_namespace{handlerestart.cpp})   
AndersenTemperatureCoupling (gmx)   extents_analyse< R, dynamic_extent, StaticExtents...> (gmx::detail)   Int64OptionStorage (gmx)   OptionStorageTemplateSimple (gmx)   StatePropagatorData (gmx)   
AnglePositionIterator (gmx::analysismodules::anonymous_namespace{angle.cpp})   extents_analyse< R, E0, StaticExtents...> (gmx::detail)   IntegerBox (gmx)   OptionsTypeVisitor (gmx)   StaticAverageHistogram (gmx::anonymous_namespace{histogram.cpp})   
Any (gmx)   ExtractClusterModuleTest (gmx::test::anonymous_namespace{extract_cluster.cpp})   IntegerOption (gmx)   OptionsVisitor (gmx)   StaticDataFrameHeaderChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp})   
AnyOutputSupportedFiles (gmx::test)   
  F  
IntegerOptionInfo (gmx)   OptionTemplate (gmx)   StaticDataPointsChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp})   
ApicIdLayout (gmx::anonymous_namespace{cpuinfo.cpp})   IntegerOptionStorage (gmx)   OptionValueConverterSimple (gmx)   StaticDataPointsStorageChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp})   
ApicInfo (gmx::anonymous_namespace{cpuinfo.cpp})   DimParams::FepDimParams (gmx)   GpuTimers::Interaction (Nbnxm)   OptionValueStoreNull (gmx)   StaticLog2 (gmx)   
APIError (gmx)   FepStateSetting (gmx)   InteractionDefinitions   OuterProductEvaluator (gmx)   StaticLog2< 0 > (gmx)   
ArrayRef (gmx)   FEPStateValue   InteractionList   OutputAdapterContainer (gmx)   StaticLog2< 1 > (gmx)   
ArrayRefWithPadding (gmx)   FileIOError (gmx)   InteractionListHandle   OutputFile   StdioTestHelper (gmx::test)   
Atom2VsiteBond   FileIOXdrSerializer (gmx)   InteractionOfType   OutputQuantities (gmx::test::anonymous_namespace{pairs.cpp})   StepWorkload (gmx)   
AtomData (gmx::test::anonymous_namespace{nb_free_energy.cpp})   FileNameOption (gmx)   InteractionsOfType   OutputQuantities (gmx::test::anonymous_namespace{nb_free_energy.cpp})   StopConditionSignal (gmx)   
AtomDistribution   FileNameOptionInfo (gmx)   InteractiveMD (gmx)   OutputQuantities (gmx::test::anonymous_namespace{bonded.cpp})   StopConditionTime (gmx)   
AtomicStructureFactor (gmx)   FileNameOptionManager (gmx)   InteractiveMolecularDynamics (gmx)   OutputRequirementOptionDirector (gmx)   StopHandler (gmx)   
AtomIndex (gmx)   FileNameOptionStorage (gmx)   InteractiveTestHelper (gmx::test)   OutputRequirements (gmx)   StopHandlerBuilder (gmx)   
AtomIndexExtremes (gmx)   FileTypeHandler (gmx::anonymous_namespace{filenameoption.cpp})   InterdependentTask (gmx)   OutputSelector (gmx)   StringCompare (gmx)   
AtomIndexSet   FilteringExactTextMatch (gmx::test)   InternalError (gmx)   OutputSelectorDeathTest (gmx::test)   StringFormatter (gmx)   
AtomInfoWithinMoleculeBlock (gmx)   FirstOrderPressureCoupling (gmx)   InvalidInputError (gmx)   
  P  
StringInputStream (gmx)   
AtomInMolblock   FixedCapacityVector (gmx)   IonSwapping (gmx)   StringKeywordMatchItem (anonymous_namespace{sm_keywords.cpp})   
AtomIterator   FlagsTemplate (gmx)   IOptionManager (gmx)   HardwareTopology::Package (gmx)   StringOption (gmx)   
AtomPair (gmx)   FlagTest (gmx::test)   IOptionsBehavior (gmx)   PackedJClusterList   StringOptionInfo (gmx)   
AtomPair (anonymous_namespace{lincs.cpp})   FloatingPointDifference (gmx::test)   IOptionsContainer (gmx)   PackHaloExternal   StringOptionStorage (gmx)   
AtomProperties   FloatingPointTolerance (gmx::test)   IOptionsContainerWithSections (gmx)   PackHaloInternal   StringOutputStream (gmx)   
AtomProperty   FloatOption (gmx)   IOptionSectionStorage (gmx)   PaddedVector (gmx)   StringTable   
AtomProxy   FloatOptionInfo (gmx)   IOptionsFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp})   PaddedVectorTest (gmx::test)   StringTableBuilder   
AtomRange   FloatOptionStorage (gmx)   IOptionValueStore (gmx)   PaddingTraits (gmx::detail)   StringTableEntry   
AtomsAdjacencyListElement   FloatTypeMatcher (gmx::test)   IOutputAdapter (gmx)   PageAlignedAllocationPolicy (gmx)   StringTestBase (gmx::test)   
Awh (gmx)   ForceBuffers (gmx)   IProgramContext (gmx)   PairDistance (gmx::analysismodules::anonymous_namespace{pairdist.cpp})   StringToEnumValueConverter (gmx)   
AwhEnergyBlock (gmx)   ForceBuffersView (gmx)   IRestraintPotential (gmx)   PairDistanceModuleData (gmx::analysismodules::anonymous_namespace{pairdist.cpp})   Subscriber (gmx::test::anonymous_namespace{observablesreducer.cpp})   
AwhParams (gmx)   ForceElement (gmx)   ISerializer (gmx)   PairDistValue (gmx)   ObservablesReducerBuilder::Impl::Subscription (gmx)   
AwhReader   ForceHelperBuffers   ISignaller (gmx)   pairHash (gmx)   SuccessListener (gmx::test::anonymous_namespace{testinit.cpp})   
AwhTestParameters (gmx::test)   ForceOutputs (gmx)   ISimulator (gmx)   PairlistParams   SurfaceAreaCalculator (gmx)   
  B  
ForceProviderInput (gmx)   ISimulatorElement (gmx)   PairlistSet   swap_compartment   
ForceProviderOutput (gmx)   isIntegralConstant (gmx)   PairlistSets   swap_group   
BalanceRegion   ForceProviders (gmx)   IsSerializableEnum (gmx)   PairSearch   SwapCoordinates (gmx)   
KeyValueTreeTransformRuleBuilder::Base (gmx)   ForceWithShiftForces (gmx)   IsSerializableType (gmx)   PairsearchWork   SynopsisFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp})   
BaseEntry   ForceWithVirial (gmx)   IsVectorOfSerializableType (gmx::test::anonymous_namespace{checkpointdata.cpp})   ParallelConsistencyError (gmx)   SystemMomenta   
basic_mdspan (gmx)   ForeignLambdaTerms   ITemperatureCouplingImpl (gmx)   UniformRealDistribution::param_type (gmx)   SystemMomentum   
BasicAverageHistogramModule (gmx::internal)   FramePairManager (gmx::test)   TestValues::TestValueGenerator::Iterator (gmx::test::anonymous_namespace{checkpointdata.cpp})   UniformIntDistribution::param_type (gmx)   
  T  
BasicHistogramImpl (gmx::internal)   FreeEnergyDispatch   Range::iterator (gmx)   TabulatedNormalDistribution::param_type (gmx)   
BasicVector (gmx)   FreeEnergyParameterTest (gmx::test::anonymous_namespace{freeenergyparameters.cpp})   ITextBlockMatcher (gmx::test)   NormalDistribution::param_type (gmx)   t_bb   
BenchmarkSystem (gmx)   FreeEnergyParameterTestParameters (gmx::test::anonymous_namespace{freeenergyparameters.cpp})   ITextBlockMatcherSettings (gmx::test)   GammaDistribution::param_type (gmx)   t_compare_value   
BerendsenTemperatureCoupling (gmx)   FreeEnergyPerturbationData (gmx)   ITopologyHolderClient (gmx)   ExponentialDistribution::param_type (gmx)   t_compiler_data   
Bias (gmx)   FreeVolume (gmx::analysismodules::anonymous_namespace{freevolume.cpp})   ITopologyProvider (gmx)   ParameterizedMdrunTestFixture (gmx::test)   t_conect (gmx::analysismodules::anonymous_namespace{sasa.cpp})   
BiasCoupledToSystem (gmx)   FrictionMetricTest (gmx::test)   ITrajectorySignallerClient (gmx)   nbnxn_atomdata_t::Params   t_coordselection   
BiasFepLambdaStateTest (gmx::test)   functor_wrapper (gmx)   ITrajectoryWriterClient (gmx)   ParrinelloRahmanBarostat (gmx)   t_edflood (anonymous_namespace{edsam.cpp})   
BiasGrid (gmx)   
  G  
IWrapper (gmx::anonymous_namespace{helpwritercontext.cpp})   PartialDeserializedTprFile   t_edvecs (anonymous_namespace{edsam.cpp})   
BiasOutputSetup   
  J  
partition   t_eigvec (anonymous_namespace{edsam.cpp})   
BiasParams (gmx)   GammaDistribution (gmx)   PbcAiuc   t_filenm   
BiasState (gmx)   GatherTest (gmx::test::anonymous_namespace{pmegathertest.cpp})   JClusterList   PdbAtomEntry   t_forcetable   
BiasStateTest (gmx::test)   GatherTestBody (gmx::test::anonymous_namespace{pmegathertest.cpp})   
  K  
PeriodicActionsTest (gmx::test)   t_idef   
BiasTest (gmx::test)   GaussianOn1DLattice (gmx)   PhysicalNodeCommunicator (gmx)   t_ilist   
BiasWriter (gmx)   GaussianSpreadKernelParameters (gmx)   KernelBenchOptions (Nbnxm)   PlanSetupData (gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp})   t_interaction_function   
BinaryInformationSettings (gmx)   GaussTransform3D (gmx)   KernelInputParameters (gmx::test::anonymous_namespace{kernel_test.cpp})   pme_setup_t   t_iparams   
bonded_threading_t   Grid::Geometry (Nbnxm)   KernelLaunchConfig   PmeBSplineModuliTest (gmx::test::anonymous_namespace{pmebsplinetest.cpp})   t_mapping   
BondedInteraction   GlobalCommandLineHelpContext (gmx)   KernelOptions (gmx::test::anonymous_namespace{kernel_test.cpp})   PmeForceSenderGpu (gmx)   t_matrix   
BondedInteractionList   GlobalCommunicationHelper (gmx)   KeyValueTreeBuilder (gmx)   PmeGpu   t_mdatoms   
BondedInteractionsTest (gmx::test)   gmx_ana_index_t   KeyValueTreeObjectArrayBuilder (gmx)   PmeGpuAtomParams   t_methoddata_compare   
BooleanOption (gmx)   gmx_ana_indexgrps_t   KeyValueTreeObjectBuilder (gmx)   PmeGpuConstParams   t_methoddata_distance   
BooleanOptionInfo (gmx)   gmx_ana_indexmap_t   KeyValueTreePath (gmx)   PmeGpuDynamicParams   t_methoddata_kweval   
BooleanOptionStorage (gmx)   gmx_ana_pos_t   KeyValueTreeTransformRuleBuilder (gmx)   PmeGpuGridParams   t_methoddata_kwint   
BoolType (gmx)   gmx_ana_poscalc_t   KeyValueTreeTransformRulesScoped (gmx)   PmeGpuHaloExchange   t_methoddata_kwreal   
BoundingBox (Nbnxm)   gmx_ana_selcollection_t   KeyValueTreeUniformArrayBuilder (gmx)   PmeGpuKernelParamsBase   t_methoddata_kwstr (anonymous_namespace{sm_keywords.cpp})   
BoundingBox1D (Nbnxm)   gmx_ana_selmethod_help_t   KeyValueTreeValueBuilder (gmx)   PmeGpuProgram   t_methoddata_pos   
BoxDeformationHandle (gmx)   gmx_ana_selmethod_t   KeywordDetailsHelpTopic (gmx::anonymous_namespace{selhelp.cpp})   PmeGpuProgramImpl   t_methoddata_same   
BoxDeformationTest (gmx::test::anonymous_namespace{boxdeformation.cpp})   gmx_ana_selparam_t   KeywordsHelpTopic (gmx::anonymous_namespace{selhelp.cpp})   PmeGpuSettings   t_nbparam   
TopologyHolder::Builder (gmx)   gmx_ana_selvalue_t   
  L  
PmeGpuSpecific   t_oriresdata   
BuildMDModulesNotifier (gmx)   gmx_cache_protect_t   PmeGpuStaging   t_pargs   
BuildMDModulesNotifier< CurrentCallParameter, CallParameter...> (gmx)   gmx_cmap_t   LangevinTest (gmx::test::anonymous_namespace{langevin.cpp})   PmeLoadBalanceHelper (gmx)   t_partition_item   
BuildMDModulesNotifier<> (gmx)   gmx_cmapdata_t   LangevinTestParameters (gmx::test::anonymous_namespace{langevin.cpp})   PmePpCommGpu (gmx)   t_pbc   
  C  
gmx_device_runtime_data_t   LastStepSignaller (gmx)   PmeShared   t_pullcoord   
gmx_domdec_constraints_t   layout_right (gmx)   PmeSolve   t_register_method   
HardwareTopology::Cache (gmx)   gmx_domdec_specat_comm_t   LeapFrogKernel   PmeSolveKernel   t_state   
CacheLineAlignedFlag (gmx)   gmx_enerdata_t   LeapFrogTest (gmx::test::anonymous_namespace{leapfrog.cpp})   PmeTest (gmx::test::anonymous_namespace{pmetest.cpp})   t_swap   
CalculateAcceptanceWeightSimple (gmx::test::anonymous_namespace{expanded.cpp})   gmx_enfrot   LeapFrogTestParameters (gmx::test::anonymous_namespace{leapfrog.cpp})   PointState (gmx)   t_symbuf   
CalcVerletBufferParameters   gmx_enfrotgrp   LegacyEnumOption (gmx)   GaussianSpreadKernelParameters::PositionAndAmplitude (gmx)   t_UmbrellaHeader   
cellInfo (gmx)   gmx_ffparams_t   LegacyInput (gmx)   PositionCalculationCollection (gmx)   t_UmbrellaWindow   
ChainIdFiller   gmx_fft_fftpack   LegacyMdrunOptions (gmx)   PotentialPointData (gmx)   t_xpmelmt   
CheckpointData (gmx)   gmx_fft_fftw3   LegacySimulator (gmx)   PpCommManager (gmx)   TabulatedNormalDistribution (gmx)   
CheckpointDataTest (gmx::test::anonymous_namespace{checkpointdata.cpp})   gmx_fft_mkl   LegacySimulatorData (gmx)   PpForceCommManager (gmx)   Task (anonymous_namespace{lincs.cpp})   
CheckpointError (gmx)   gmx_ga2la_t   LennardJonesCalculator (gmx)   PpRanks   TemperatureCouplingData (gmx)   
CheckpointHandler (gmx)   gmx_help_make_index_group   LennardJonesCalculator< calculateEnergies, InteractionModifiers::ForceSwitch > (gmx)   PpRanksSendFInfo   TerminationHelper (gmx::test)   
CheckpointHeaderContents   gmx_hw_opt_t   LennardJonesCalculator< calculateEnergies, InteractionModifiers::PotSwitch > (gmx)   PreprocessingAtomTypes   TestDevice (gmx::test)   
CheckpointHelper (gmx)   gmx_kernel_timing_data_t   LennardJonesCalculator< false, InteractionModifiers::PotShift > (gmx)   PreprocessingBondAtomType   TestException (gmx::test)   
CheckpointHelperBuilder (gmx)   gmx_localtop_t   LennardJonesCalculator< true, InteractionModifiers::PotShift > (gmx)   PreprocessResidue   TestFileInputRedirector (gmx::test)   
CheckpointOptions (gmx)   gmx_molblock_t   Lincs (gmx)   PrintReplicaExchangeParametersToString (gmx::test)   TestFileManager (gmx::test)   
cl_nbparam_params   gmx_moltype_t   LincsDeviations (gmx)   ProcessFrameConversion (gmx)   TestFileOutputRedirector (gmx::test)   
ClfftInitializer (gmx)   gmx_multisim_t   LincsGpu (gmx)   HardwareTopology::ProcessingUnit (gmx)   TestHardwareEnvironment (gmx::test)   
ClHandle (gmx)   gmx_nodecomm_t   LinkFrontier (gmx)   Profiling (gmx)   TestOptionsProvider (gmx::test)   
CMainCommandLineModule (gmx::anonymous_namespace{cmdlinemodulemanager.cpp})   gmx_pme_comm_n_box_t   ListedForces   Propagator (gmx)   TestOptionsRegistry (gmx::test::anonymous_namespace{testoptions.cpp})   
TextTableFormatter::Impl::ColumnData (gmx)   gmx_pme_comm_vir_ene_t   ListInput (gmx::test::anonymous_namespace{pairs.cpp})   PropagatorConnection (gmx)   TestProgramContext (gmx::test::anonymous_namespace{testinit.cpp})   
ColvarProxyGromacs (gmx)   gmx_pme_pp   ListInput (gmx::test::anonymous_namespace{nb_free_energy.cpp})   PropagatorTag (gmx)   TestReferenceChecker (gmx::test)   
ColvarsForceProvider (gmx)   gmx_potfit   ListOfLists (gmx)   PTCouplingArrays (gmx)   TestReferenceData (gmx::test)   
ColvarsForceProviderState (gmx)   gmx_repl_ex   LocalAtomSet (gmx)   pull_coord_work_t   TestReferenceDataImpl (gmx::test::internal)   
ColvarsMDModule (gmx::anonymous_namespace{colvarsMDModule_stub.cpp})   gmx_reverse_top_t   LocalAtomSetManager (gmx)   pull_group_work_t   TestSystem (gmx::test::anonymous_namespace{pmegathertest.cpp})   
ColvarsMDModule (gmx::anonymous_namespace{colvarsMDModule.cpp})   gmx_sel_evaluate_t   LocalSettleData   PullCoordExpressionParser (gmx)   TestSystem (gmx::test::anonymous_namespace{kernel_test.cpp})   
ColvarsModuleInfo (gmx)   gmx_sel_lexer_t   LocalTopologyChecker (gmx)   DimParams::PullDimParams (gmx)   TestValues::TestValueGenerator (gmx::test::anonymous_namespace{checkpointdata.cpp})   
ColvarsOptions (gmx)   gmx_sel_mempool_block_t   LogEntryWriter (gmx)   PullElement (gmx)   TestValues (gmx::test::anonymous_namespace{checkpointdata.cpp})   
ColvarsOptions (gmx::anonymous_namespace{colvarsMDModule_stub.cpp})   gmx_sel_mempool_t   LoggerBuilder (gmx)   PullIntegrationTest (gmx::test::anonymous_namespace{pull.cpp})   TextFileMatch (gmx::test)   
ColvarsPreProcessor (gmx)   gmx_slabdata   LoggerOwner (gmx)   
  Q  
TextInputFile (gmx)   
ColvarsSimulationsParameters (gmx)   gmx_sparsematrix   LoggerTestHelper (gmx::test)   TextInputStream (gmx)   
COMInPlaceTest (gmx::test::anonymous_namespace{com.cpp})   gmx_specatsend_t   LoggingSignaller (gmx)   QMInputFileName (gmx)   TextLineWrapper (gmx)   
CommandLine (gmx::test)   gmx_tng_trajectory   HardwareTopology::LogicalProcessor (gmx)   QMMM (gmx::anonymous_namespace{qmmm.cpp})   TextLineWrapperSettings (gmx)   
CommandLineCommonOptionsHolder (gmx)   gmx_wallclock_gpu_nbnxn_t   CpuInfo::LogicalProcessor (gmx)   QMMMForceProvider (gmx)   TextOutputFile (gmx)   
CommandLineHelpContext (gmx)   gmx_wallclock_gpu_pme_t   LogLevelHelper (gmx)   QMMMInputGenerator (gmx)   TextOutputStream (gmx)   
CommandLineHelpModule (gmx)   gmx_walltime_accounting   LogWriteHelper (gmx)   QMMMModuleInfo (gmx)   TextReader (gmx)   
CommandLineHelpWriter (gmx)   Gpu3dFft (gmx)   
  M  
QMMMOptions (gmx)   TextReaderTest (gmx::test::anonymous_namespace{textreader.cpp})   
CommandLineModuleGroup (gmx)   gpu_plist (Nbnxm)   QMMMOutputProvider (gmx::anonymous_namespace{qmmm.cpp})   TextReaderTestParams (gmx::test::anonymous_namespace{textreader.cpp})   
CommandLineModuleGroupData (gmx)   GpuForceReduction (gmx)   HardwareTopology::Machine (gmx)   QMMMParameters (gmx)   TextTableFormatter (gmx)   
CommandLineModuleManager (gmx)   GpuHaloExchange (gmx)   ManualOutputFile (gmx::test::anonymous_namespace{extract_cluster.cpp})   QMMMSimulationParameterSetup (gmx::anonymous_namespace{qmmm.cpp})   TextWriter (gmx)   
CommandLineModuleManagerTestBase (gmx::test)   gpuPlistSorting (Nbnxm)   MappedUnionFinder (gmx)   QMMMTopologyInfo (gmx)   thread_work_t   
CommandLineModuleSettings (gmx)   GpuRegionTimerImpl   layout_right::mapping (gmx)   QMMMTopologyPreprocessor (gmx)   ThreadedForceBuffer (gmx)   
CommandLineParser (gmx)   GpuRegionTimerWrapper   MaxNumFrames (gmx::test)   QuadraticSplineTable (gmx)   ThreadForceBuffer (gmx)   
CommandLineProgramContext (gmx)   GpuTaskAssignments (gmx)   MDAtoms (gmx)   
  R  
ThreadingInfo (gmx)   
CommandLineTestBase (gmx::test)   GpuTaskAssignmentsBuilder (gmx)   MDLogger (gmx)   ThreeFry2x64 (gmx)   
CommandLineTestHelper (gmx::test)   GpuTaskMapping (gmx)   MDModules (gmx)   Range (gmx)   ThreeFry2x64Fast (gmx)   
CommandsHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   GpuTimers (Nbnxm)   MDModulesAtomsRedistributedSignal (gmx)   RangeError (gmx)   ThreeFry2x64General (gmx)   
CompositeHelpTopic (gmx)   Grid (Nbnxm)   MDModulesCheckpointReadingBroadcast (gmx)   RangePartitioning (gmx)   ThrowLocation (gmx)   
CompositeSimulatorElement (gmx)   GridAxis (gmx)   MDModulesCheckpointReadingDataOnMain (gmx)   ObservablesReducerIntegrationTest::RankData (gmx::test::anonymous_namespace{observablesreducer.cpp})   TimeOptionScaler (gmx::anonymous_namespace{timeunitmanager.cpp})   
ComputeDebyeScattering (gmx)   GridConverter   MDModulesEnergyOutputToDensityFittingRequestChecker (gmx)   Rdf (gmx::analysismodules::anonymous_namespace{rdf.cpp})   TimeStep (gmx)   
ComputeGlobalsElement (gmx)   GridPoint (gmx)   MDModulesEnergyOutputToQMMMRequestChecker (gmx)   RdfModuleData (gmx::analysismodules::anonymous_namespace{rdf.cpp})   TimeUnitBehavior (gmx)   
ConfMatch (gmx::test)   GridSet (Nbnxm)   MDModulesNotifier (gmx)   ReadCheckpointDataHolder (gmx)   TimeUnitManager (gmx)   
Constraints (gmx)   GridSetData (Nbnxm)   MDModulesNotifiers (gmx)   RealFunctionvalueAtCoordinate (gmx)   TimingOptions (gmx)   
ConstraintsElement (gmx)   GridWork (Nbnxm)   MDModulesWriteCheckpointData (gmx)   ReduceKernel   TimingTest (gmx::test::anonymous_namespace{timing.cpp})   
ConstraintsParam (gmx)   GromacsException (gmx)   MdrunCompressedXOutputTest (anonymous_namespace{compressed_x_output.cpp})   ReferenceFileNames (gmx::test)   ToleranceError (gmx)   
ConstraintsTest (gmx::test::anonymous_namespace{constr.cpp})   GromppMtsOpts (gmx)   MdRunInputFilename (gmx)   StatePropagatorData::ReferenceTemperatureHelper (gmx)   KeyValueTreeTransformRuleBuilder::ToObject (gmx)   
ContinuationFramePairManager (gmx::test::anonymous_namespace{exactcontinuation.cpp})   GromppTest (anonymous_namespace{grompp.cpp})   Mdrunner (gmx)   ReferenceTemperatureManager (gmx)   TopologyData (gmx)   
ConvertTprInfo (gmx)   OptionSectionImpl::Group (gmx::internal)   MdrunnerBuilder (gmx)   RepeatingOptionSection (gmx)   TopologyHolder (gmx)   
CorrelationBlockData::CoordData (gmx)   GyrateModuleTest (gmx::test)   MdrunNoAppendContinuationIsExact (gmx::test::anonymous_namespace{exactcontinuation.cpp})   RepeatingOptionSectionHandle (gmx)   TopologyInformation (gmx)   
CoordinatesAndBoxPreprocessed (gmx)   
  H  
MdrunOptions (gmx)   RepeatingOptionSectionStorage (gmx)   TopologyManager (gmx::test)   
CoordState (gmx)   MdrunRerunTest (gmx::test::anonymous_namespace{rerun.cpp})   ReplicaExchangeParameters   KeyValueTreeTransformRuleBuilder::ToValue (gmx)   
HardwareTopology::Core (gmx)   HardwareTopology (gmx)   MdrunTestFixture (gmx::test)   SelectionOptionManager::Impl::RequestsClearer (gmx)   TpiTest (gmx::test::anonymous_namespace{tpitest.cpp})   
BoundingBox::Corner (Nbnxm)   HashedMap (gmx)   MdrunTestFixtureBase (gmx::test)   RequireEvenRankCountWithAtLeastFourRanks (gmx::test::anonymous_namespace{threadaffinity_mpi.cpp})   TprAndFileManager (gmx::test)   
DispersionCorrection::Correction   HbondModuleTest (gmx::test)   MembedHolder (gmx)   RequireMinimumRankCount (gmx::test)   TpxFileHeader   
CorrelationBlockData (gmx)   HbondStorage (gmx::analysismodules::anonymous_namespace{hbond.cpp})   MempoolGroupReserver (anonymous_namespace{evaluate.cpp})   RequireRankCount (gmx::test)   TrajectoryAnalysisCommandLineRunner (gmx)   
CorrelationGrid (gmx)   HbondStorageFrame (gmx::analysismodules::anonymous_namespace{hbond.cpp})   MempoolSelelemReserver (anonymous_namespace{evaluate.cpp})   ResetHandler (gmx)   TrajectoryAnalysisModule (gmx)   
CorrelationTensor (gmx)   HelpExportCompletion (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   MessageStringCollector (gmx)   ResInfo (gmx::analysismodules::anonymous_namespace{dssp.cpp})   TrajectoryAnalysisModuleData (gmx)   
CoulombCalculator (gmx)   HelpExportReStructuredText (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   MessageStringContext (gmx)   RestraintForceProvider (gmx)   TrajectoryAnalysisModuleDataBasic (gmx::anonymous_namespace{analysismodule.cpp})   
CoulombCalculator< KernelCoulombType::EwaldAnalytical > (gmx)   HelpLinks (gmx)   MessageWriterFileNoThrow (gmx::anonymous_namespace{exceptions.cpp})   RestraintManager (gmx)   TrajectoryAnalysisModuleTestFixture (gmx::test)   
CoulombCalculator< KernelCoulombType::EwaldTabulated > (gmx)   HelpManager (gmx)   MessageWriterString (gmx::anonymous_namespace{exceptions.cpp})   RestraintMDModule (gmx)   TrajectoryAnalysisRunnerCommon (gmx)   
CoulombCalculator< KernelCoulombType::RF > (gmx)   HelpWriterContext (gmx)   MessageWriterTextWriter (gmx::anonymous_namespace{exceptions.cpp})   RestraintMDModuleImpl (gmx)   TrajectoryAnalysisSettings (gmx)   
CpuInfo (gmx)   HistogramSize (gmx)   methoddata_insolidangle   ReverseTopOptions   TrajectoryComparison (gmx::test)   
Constraints::CreationHelper (gmx)   history_t   methoddata_merge   RocfftInitializer (gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp})   TrajectoryElement (gmx)   
CromerMannParameters (gmx)   HostAllocationPolicy (gmx)   methoddata_permute   RocfftPlan (gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp})   TrajectoryElementBuilder (gmx)   
CrossCorrelationEvaluationHelperValues (gmx::anonymous_namespace{densityfit.cpp})   HostAllocatorTest (gmx::test)   MimicCommunicator (gmx)   RootHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   TrajectoryFileOpener (gmx)   
CrossCorrelationGradientAtVoxel (gmx::anonymous_namespace{densityfit.cpp})   HostAllocatorTestNoMem (gmx::test)   MimicTest (gmx::test)   RotationTest (gmx::test::anonymous_namespace{pull_rotation.cpp})   TrajectoryFrame (gmx)   
CrystallographicLabels (gmx)   HostAllocatorTestNoMemCopyable (gmx::test)   MindistAction (gmx::anonymous_namespace{nbsearch.cpp})   RstParagraphIterator (gmx)   TrajectoryFrameMatchSettings (gmx::test)   
CubicSplineTable (gmx)   HostInteractionList (gmx)   MissingElementConnectionError (gmx)   RVecMatcher (gmx::test)   TrajectoryFrameReader (gmx::test)   
  D  
HostMemoryTest (gmx::test)   MockAverageHistogram (anonymous_namespace{histogram.cpp})   
  S  
TrajectoryFrameWriter (gmx)   
  I  
MockHardwareTopologyTest (gmx::test::anonymous_namespace{mockhardwaretopology.cpp})   TrajectoryFrameWriterTest (gmx::test)   
DataFileFinder (gmx)   MockModule (gmx::test)   SansDebye (gmx)   TrajectorySignaller (gmx)   
DataFileInfo (gmx)   IAnalysisDataModule (gmx)   MockOption (anonymous_namespace{abstractoptionstorage.cpp})   Sasa (gmx::analysismodules::anonymous_namespace{sasa.cpp})   TrajectoryTolerances (gmx::test)   
DataFileOptions (gmx)   ICheckpointHelperClient (gmx)   MockOptionsModule (gmx::test)   SasaModuleData (gmx::analysismodules::anonymous_namespace{sasa.cpp})   TranslateAndScale (gmx)   
DataStorageRequester (gmx::test::anonymous_namespace{mock_datamodule.cpp})   NbnxnPairlistCpuWork::IClusterData   MockOptionStorage (anonymous_namespace{abstractoptionstorage.cpp})   SaxsDebye (gmx)   
  U  
dd_corners_t   ICommandLineModule (gmx)   ModularSimulator (gmx)   ScalarDataTypes   
DDBalanceRegionHandler   ICommandLineOptionsModule (gmx)   ModularSimulatorAlgorithm (gmx)   ScalingMatrix (gmx)   UmbrellaOptions   
DDGridSetup   ICommandLineOptionsModuleSettings (gmx)   ModularSimulatorAlgorithmBuilder (gmx)   ScatteringModule (gmx::test::anonymous_namespace{scattering.cpp})   UniformIntDistribution (gmx)   
DDPairInteractionRanges   IdentityFormatter (gmx)   ModularSimulatorAlgorithmBuilderHelper (gmx)   SearchCycleCounting   UniformRealDistribution (gmx)   
DefaultExecutableEnvironment (gmx::anonymous_namespace{cmdlineprogramcontext.cpp})   IDomDecHelperClient (gmx)   ModularSimulatorError (gmx)   SecondaryStructures (gmx::analysismodules::anonymous_namespace{dssp.cpp})   UnionFinder (gmx)   
DefaultInitializationAllocator (gmx)   IEnergyAnalysis (gmx)   ModuleHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   SecondaryStructuresData (gmx::analysismodules::anonymous_namespace{dssp.cpp})   UnitCellInfo   
DefaultInputRedirector (gmx::anonymous_namespace{fileredirector.cpp})   IEnergySignallerClient (gmx)   AnalysisDataModuleManager::Impl::ModuleInfo (gmx)   Selection (gmx)   UnpackAndAddHaloInternal   
DefaultOutputRedirector (gmx::anonymous_namespace{fileredirector.cpp})   IExceptionInfo (gmx::internal)   ModuleSelection (gmx::test)   SelectionCollection (gmx)   UnpackHaloExternal   
DefaultProgramContext (gmx::anonymous_namespace{programcontext.cpp})   IExecutableEnvironment (gmx)   ModuleTest (gmx::test)   SelectionData (gmx::internal)   Update (gmx)   
DensityFitting (gmx::anonymous_namespace{densityfitting.cpp})   IFileInputRedirector (gmx)   MolecularTopologyAtomIndices   SelectionEvaluator (gmx)   UpdateGroups (gmx)   
DensityFittingAmplitudeLookup (gmx)   IFileMatcher (gmx::test)   MoleculeBlockIndices   SelectionFileOption (gmx)   UpdateGroupsCog (gmx)   
DensityFittingForce (gmx)   IFileMatcherSettings (gmx::test)   MoleculeData (gmx::analysismodules::anonymous_namespace{msd.cpp})   SelectionFileOptionInfo (gmx)   UpdateGroupsTest (gmx::anonymous_namespace{updategroups.cpp})   
DensityFittingForceProvider (gmx)   IFileOutputRedirector (gmx)   MoleculeInformation   SelectionFileOptionStorage (gmx)   UserInputError (gmx)   
DensityFittingForceProviderState (gmx)   IForceProvider (gmx)   MoleculePatch   SelectionLocation (gmx)   UserInputTest (gmx::test)   
DensityFittingModuleInfo (gmx)   IFrameConverter (gmx)   MoleculePatchDatabase   SelectionOption (gmx)   
  V  
DensityFittingOptions (gmx)   IHelpExport (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   MoleculeType   SelectionOptionBehavior (gmx)   
DensityFittingOutputProvider (gmx)   IHelpTopic (gmx)   MrcDataStatistics (gmx)   SelectionOptionInfo (gmx)   VelocityScalingTemperatureCoupling (gmx)   
DensityFittingParameters (gmx)   IKeyValueTreeTransformRules (gmx)   MrcDensityMapHeader (gmx)   SelectionOptionManager (gmx)   VirtualSiteTest::VirtualSite (gmx::test::anonymous_namespace{virtualsites.cpp})   
DensityFittingSimulationParameterSetup (gmx::anonymous_namespace{densityfitting.cpp})   ILastStepSignallerClient (gmx)   MrcDensityMapOfFloatFromFileReader (gmx)   SelectionOptionStorage (gmx)   VirtualSiteTopology::VirtualSiteAngle   
DensityFittingTest (gmx::test)   ilist_data_t   MrcDensityMapOfFloatReader (gmx)   SelectionParserParameter (gmx)   VirtualSiteTopology::VirtualSiteBond   
DensitySimilarityCrossCorrelation (gmx::anonymous_namespace{densityfit.cpp})   iListInput (gmx::test::anonymous_namespace{bonded.cpp})   MrcDensityMapOfFloatWriter (gmx)   SelectionParserSymbol (gmx)   VirtualSiteConfiguration   
DensitySimilarityInnerProduct (gmx::anonymous_namespace{densityfit.cpp})   IListIterator   MrcDensitySkewData (gmx)   SelectionParserSymbolIterator (gmx)   VirtualSitesHandler (gmx)   
DensitySimilarityMeasure (gmx)   IListProxy   Msd (gmx::analysismodules)   SelectionParserSymbolTable (gmx)   VirtualSiteTopology   
DensitySimilarityRelativeEntropy (gmx::anonymous_namespace{densityfit.cpp})   IListRange   MsdData::MsdColumnProxy (gmx::analysismodules::anonymous_namespace{msd.cpp})   SelectionParserValue (gmx)   VRescaleTemperatureCoupling (gmx)   
DevelopmentFeatureFlags (gmx)   ILoggingSignallerClient (gmx)   MsdCoordinateManager (gmx::analysismodules::anonymous_namespace{msd.cpp})   SelectionPosition (gmx)   VsiteAtomMapping   
HardwareTopology::Device (gmx)   ILogTarget (gmx)   MsdData (gmx::analysismodules::anonymous_namespace{msd.cpp})   SelectionOptionManager::Impl::SelectionRequest (gmx)   VsiteBondedInteraction   
DeviceDetectionResult (gmx)   IMDEnergyBlock (gmx)   MsdGroupData (gmx::analysismodules::anonymous_namespace{msd.cpp})   SelectionTopologyProperties (gmx)   VsiteBondParameter   
DeviceInformation   IMDHeader (gmx)   MsdMatcher (gmx::test::anonymous_namespace{msd.cpp})   SelectionTreeElement (gmx)   VsiteThread (gmx)   
DeviceStream   IMDModule (gmx)   MtsLevel (gmx)   SelelemTemporaryValueAssigner (anonymous_namespace{evaluate.cpp})   
  W  
DeviceStreamManager (gmx)   ImdOptions (gmx)   MttkBoxScaling (gmx)   SelMethodEvalContext (gmx)   
DeviceStreamManagerTest (gmx::test::anonymous_namespace{device_stream_manager.cpp})   IMDOutputProvider (gmx)   MttkData (gmx)   SeparatePmeRanksPermitted (gmx)   wallcc_t   
df_history_t   IMdpOptionProvider (gmx)   MttkElement (gmx)   SetAtoms (gmx)   WarningHandler   
DiagonalMasker (gmx)   IMDSocket (gmx)   MttkPropagatorConnection (gmx)   SetAtomsSupportedFiles (gmx::test)   WaterMolecule   
DiagonalMasker< nR, kernelLayout, KernelLayoutClusterRatio::JSizeEqualsISize > (gmx)   IMessageWriter (gmx::anonymous_namespace{exceptions.cpp})   MttkPropagatorConnectionDetails (gmx)   SetAtomsTest (gmx::test)   WholeMoleculeTransform (gmx)   
DiagonalMasker< nR, kernelLayout, KernelLayoutClusterRatio::JSizeIsDoubleISize > (gmx)   Update::Impl   MultiDimArray (gmx)   SetAtomsUnSupportedFiles (gmx::test)   WorkDivision   
DiagonalMasker< nR, kernelLayout, KernelLayoutClusterRatio::JSizeIsHalfISize > (gmx)   gmx_reverse_top_t::Impl   MultiSimTest (gmx::test)   SetBothTimeTest (gmx::test)   WrapperToString (gmx::anonymous_namespace{helpwritercontext.cpp})   
Grid::Dimensions (Nbnxm)   VirtualSitesHandler::Impl (gmx)   
  N  
SetBox (gmx)   WrapperToVector (gmx::anonymous_namespace{helpwritercontext.cpp})   
DimParams (gmx)   UpdateConstrainGpu::Impl (gmx)   SetForces (gmx)   WriteCheckpointDataHolder (gmx)   
DipoleData   TrajectoryAnalysisSettings::Impl (gmx)   NBAtomDataGpu   SetForceSupportedFiles (gmx::test)   
  X  
DirectoryEnumerator (gmx)   TrajectoryAnalysisModuleData::Impl (gmx)   NbnxmGpu   SetForceUnSupportedFiles (gmx::test)   
AtomDistribution::DomainAtomGroups   TrajectoryAnalysisModule::Impl (gmx)   NbnxmKernel   SetPrecision (gmx)   GpuTimers::XFTransfers (Nbnxm)   
DomainDecompositionBuilder (gmx)   TextTableFormatter::Impl (gmx)   NbnxmKernelPruneOnly   SetPrecisionSupportedFiles (gmx::test)   XvgMatch (gmx::test)   
DomainInfo (gmx)   TextReader::Impl (gmx)   NbnxmKernelTest (gmx::test::anonymous_namespace{kernel_test.cpp})   SetPrecisionUnSupportedFiles (gmx::test)   
DomainLifetimeWorkload (gmx)   TestReferenceChecker::Impl (gmx::test)   NbnxmKernelTestBody (gmx::test)   SetStartTime (gmx)   
GridSet::DomainSetup (Nbnxm)   TestFileManager::Impl (gmx::test)   nbnxn_atomdata_output_t   SetStartTimeTest (gmx::test)   
A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X