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gmx
ColvarsOptions
gmx::ColvarsOptions Member List
This is the complete list of members for
gmx::ColvarsOptions
, including all inherited members.
buildMdpOutput
(KeyValueTreeObjectBuilder *builder) const override
gmx::ColvarsOptions
virtual
colvarsAtomCoords
() const
gmx::ColvarsOptions
colvarsConfigContent
() const
gmx::ColvarsOptions
colvarsEnsTemp
() const
gmx::ColvarsOptions
colvarsFileName
() const
gmx::ColvarsOptions
colvarsInputFiles
() const
gmx::ColvarsOptions
colvarsOutputPrefix
() const
gmx::ColvarsOptions
colvarsSeed
() const
gmx::ColvarsOptions
initMdpOptions
(IOptionsContainerWithSections *options) override
gmx::ColvarsOptions
virtual
initMdpTransform
(IKeyValueTreeTransformRules *rules) override
gmx::ColvarsOptions
virtual
isActive
() const
gmx::ColvarsOptions
processCoordinates
(const CoordinatesAndBoxPreprocessed &coord)
gmx::ColvarsOptions
processEdrFilename
(const EdrOutputFilename &filename)
gmx::ColvarsOptions
processTemperature
(const EnsembleTemperature &temp)
gmx::ColvarsOptions
processTopology
(gmx_mtop_t *mtop)
gmx::ColvarsOptions
readInternalParametersFromKvt
(const KeyValueTreeObject &tree)
gmx::ColvarsOptions
setLogger
(const MDLogger &logger)
gmx::ColvarsOptions
setParameters
(const std::string &colvarsfile, const t_atoms &topology, ArrayRef< const RVec > coords, PbcType pbcType, const matrix boxValues, real temperature)
gmx::ColvarsOptions
writeInternalParametersToKvt
(KeyValueTreeObjectBuilder treeBuilder)
gmx::ColvarsOptions
~IMdpOptionProvider
() (defined in
gmx::IMdpOptionProvider
)
gmx::IMdpOptionProvider
inline
protected
virtual
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