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gmx::ColvarsPreProcessor Member List

This is the complete list of members for gmx::ColvarsPreProcessor, including all inherited members.

backup_file(char const *filename) overridegmx::ColvarProxyGromacs
check_atom_id(int atomNumber) overridegmx::ColvarProxyGromacs
ColvarProxyGromacs(const std::string &colvarsConfigString, t_atoms atoms, PbcType pbcType, const MDLogger &logger, bool doParsing, const std::map< std::string, std::string > &inputStrings, real ensembleTemperature, int seed)gmx::ColvarProxyGromacs
ColvarsPreProcessor(const std::string &colvarsConfigString, t_atoms atoms, PbcType pbcType, const MDLogger &logger, real ensembleTemperature, int seed, const matrix box, ArrayRef< const RVec > x)gmx::ColvarsPreProcessor
doParsing_gmx::ColvarProxyGromacsprotected
error(std::string const &message) overridegmx::ColvarProxyGromacs
getColvarsCoords()gmx::ColvarsPreProcessor
gmxAtoms_gmx::ColvarProxyGromacsprotected
gmxPbc_ (defined in gmx::ColvarProxyGromacs)gmx::ColvarProxyGromacsprotected
init_atom(int atomNumber) overridegmx::ColvarProxyGromacs
inputStreamsToKVT(KeyValueTreeObjectBuilder treeBuilder, const std::string &tag)gmx::ColvarsPreProcessor
log(std::string const &message) overridegmx::ColvarProxyGromacs
logger_ (defined in gmx::ColvarProxyGromacs)gmx::ColvarProxyGromacsprotected
normalDistribution_ (defined in gmx::ColvarProxyGromacs)gmx::ColvarProxyGromacsprotected
pbcType_gmx::ColvarProxyGromacsprotected
position_distance(cvm::atom_pos const &pos1, cvm::atom_pos const &pos2) const overridegmx::ColvarProxyGromacs
rand_gaussian() overridegmx::ColvarProxyGromacs
rng_ (defined in gmx::ColvarProxyGromacs)gmx::ColvarProxyGromacsprotected
set_unit_system(std::string const &unitsIn, bool colvarsDefined) overridegmx::ColvarProxyGromacs
updateAtomProperties(int index)gmx::ColvarProxyGromacs
~ColvarProxyGromacs() override (defined in gmx::ColvarProxyGromacs)gmx::ColvarProxyGromacs