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Gromacs
2026.0-dev-20251119-5f0a571d
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This is the complete list of members for gmx::ColvarsPreProcessor, including all inherited members.
| backup_file(char const *filename) override | gmx::ColvarProxyGromacs | |
| check_atom_id(int atomNumber) override | gmx::ColvarProxyGromacs | |
| ColvarProxyGromacs(const std::string &colvarsConfigString, t_atoms atoms, PbcType pbcType, const MDLogger &logger, bool doParsing, const std::map< std::string, std::string > &inputStrings, real ensembleTemperature, int seed) | gmx::ColvarProxyGromacs | |
| ColvarsPreProcessor(const std::string &colvarsConfigString, t_atoms atoms, PbcType pbcType, const MDLogger &logger, real ensembleTemperature, int seed, const matrix box, ArrayRef< const RVec > x) | gmx::ColvarsPreProcessor | |
| doParsing_ | gmx::ColvarProxyGromacs | protected |
| error(std::string const &message) override | gmx::ColvarProxyGromacs | |
| getColvarsCoords() | gmx::ColvarsPreProcessor | |
| gmxAtoms_ | gmx::ColvarProxyGromacs | protected |
| gmxPbc_ (defined in gmx::ColvarProxyGromacs) | gmx::ColvarProxyGromacs | protected |
| init_atom(int atomNumber) override | gmx::ColvarProxyGromacs | |
| inputStreamsToKVT(KeyValueTreeObjectBuilder treeBuilder, const std::string &tag) | gmx::ColvarsPreProcessor | |
| log(std::string const &message) override | gmx::ColvarProxyGromacs | |
| logger_ (defined in gmx::ColvarProxyGromacs) | gmx::ColvarProxyGromacs | protected |
| normalDistribution_ (defined in gmx::ColvarProxyGromacs) | gmx::ColvarProxyGromacs | protected |
| pbcType_ | gmx::ColvarProxyGromacs | protected |
| position_distance(cvm::atom_pos const &pos1, cvm::atom_pos const &pos2) const override | gmx::ColvarProxyGromacs | |
| rand_gaussian() override | gmx::ColvarProxyGromacs | |
| rng_ (defined in gmx::ColvarProxyGromacs) | gmx::ColvarProxyGromacs | protected |
| set_unit_system(std::string const &unitsIn, bool colvarsDefined) override | gmx::ColvarProxyGromacs | |
| updateAtomProperties(int index) | gmx::ColvarProxyGromacs | |
| ~ColvarProxyGromacs() override (defined in gmx::ColvarProxyGromacs) | gmx::ColvarProxyGromacs |
1.8.5