Here is a list of all documented class members with links to the class documentation for each member:

- c -

• c : t_pargs , dd_corners_t , gmx_kernel_timing_data_t , wallcc_t , t_nbparam , gmx::CromerMannParameters
• C : t_bb
• c1 : t_xpmelmt
• c2 : t_xpmelmt
• c_labelSize : gmx::CrystallographicLabels
• c_numCorrelationBlocks : gmx::CorrelationTensor
• c_numEigenRealsPerExperiment : t_oriresdata
• c_numPointsPerSigma : gmx::BiasGrid
• c_nvshmemThreadsPerBlock : gmx::nvshmemHaloExchangeOps
• c_rf : gmx::cl_nbparam_params , gmx::NBParamGpu
• c_scopeCutoff : gmx::BiasGrid
• CA : t_bb
• cACC : t_mdatoms
• cAcceleration_ : gmx::Update::Impl
• caches : gmx::HardwareTopology::Machine
• calcColumnIndices() : gmx::Grid
• calcConvolvedBias() : gmx::Bias , gmx::BiasState
• calcConvolvedForce() : gmx::BiasState
• calcForceAndUpdateBias() : gmx::Bias
• calculate() : ListedForces , gmx::SurfaceAreaCalculator , gmx::test::anonymous_namespace{virtualsites.cpp}::VirtualSiteTest::VirtualSite
• calculateForces() : gmx::anonymous_namespace{electricfield.cpp}::ElectricField , gmx::NNPotForceProvider , gmx::PlumedForceProvider , gmx::QMMMForceProvider , gmx::IForceProvider , gmx::ForceProviders , gmx::RestraintForceProvider , gmx::ColvarsForceProvider , gmx::DensityFittingForceProvider
• calculateIntegral() : gmx::NoseHooverGroup
• calculateIntegralIfNeeded() : gmx::MttkData
• calculationIntervalInSteps_ : gmx::DensityFittingParameters
• calcUmbrellaForceAndPotential() : gmx::BiasState
• calcVirial : gmx::test::anonymous_namespace{settle.cpp}::SettleTestParameters
• callback : gmx::test::anonymous_namespace{textreader.cpp}::TextReaderTestParams
• CallbackAfterReduction : gmx::ObservablesReducerBuilder
• callbackAfterReduction : gmx::ObservablesReducerBuilder::Impl::Subscription , gmx::test::anonymous_namespace{observablesreducer.cpp}::Subscriber
• CallbackFromBuilder : gmx::ObservablesReducerBuilder
• callbackFromBuilder : gmx::ObservablesReducerBuilder::Impl::Subscription
• callbacksAfterReduction_ : gmx::ObservablesReducer::Impl
• callbackToRequireReduction : gmx::Lincs
• CallbackToRequireReduction : gmx::ObservablesReducerBuilder
• callbackToRequireReduction_ : gmx::LocalTopologyChecker::Impl , gmx::test::anonymous_namespace{observablesreducer.cpp}::Subscriber , ExclusionChecker::Impl
• callbackWhenBufferAvailable() : gmx::test::anonymous_namespace{observablesreducer.cpp}::Subscriber
• callGrompp() : gmx::test::SimulationRunner
• callGromppOnThisRank() : gmx::test::SimulationRunner
• callMdrun() : gmx::test::SimulationRunner
• callNmeig() : gmx::test::SimulationRunner
• canUseGpuAwareMpi : gmx::DevelopmentFeatureFlags
• capacity() : gmx::FixedCapacityVector< typename, size_t > , gmx::ArrayRef< typename >
• captureThisStep() : gmx::MdGpuGraph::Impl
• cartSetup_ : gmx::DomainDecompositionBuilder::Impl
• cast() : gmx::Any
• castRef() : gmx::Any
• cBooleanNodeName : gmx::test::TestReferenceChecker::Impl
• cc_ : gmx::SearchCycleCounting
• cCharNodeName : gmx::test::TestReferenceChecker::Impl
• cdata : gmx::SelectionTreeElement
• cell : gmx_ga2la_t::Entry , gmx::cellInfo
• cellAngles_ : gmx::MrcDensityMapHeader
• cellLength_ : gmx::MrcDensityMapHeader
• cellOffset() : gmx::Grid
• cellRange : gmx::DomainCommBackward::ColumnInfo
• cells : gmx::GridSetData , gmx::GridSet
• cellSize : gmx::cellInfo , gmx::GridDimensions
• cellSizeAlloc : gmx::cellInfo
• cellSizesBuffer : AtomDistribution
• cellSizeX : gmx::DomdecOptions
• cellSizeY : gmx::DomdecOptions
• cellSizeZ : gmx::DomdecOptions
• cENER : t_mdatoms
• center : methoddata_insolidangle , swap_group
• centerOfMass() : gmx::Site
• cfrac : methoddata_insolidangle
• cFREEZE : t_mdatoms
• cFREEZE_ : gmx::Update::Impl
• cg_gl : t_state
• cg_p : t_state
• cgnr : PreprocessResidue , MoleculePatch
• cgrp : gmx::SelectionTreeElement
• changeNumAtoms() : t_state
• changePairlistRadii() : gmx::nonbonded_verlet_t , gmx::PairlistSets
• changeReferenceTemperatureCallback() : gmx::ModularSimulatorAlgorithmBuilderHelper
• changeTprNsteps() : gmx::test::SimulationRunner
• channel_label : swap_group
• charge() : gmx::SelectionPosition
• chargeA : gmx_pme_pp , t_mdatoms
• chargeB : t_mdatoms
• charges : gmx::test::anonymous_namespace{pmegathertest.cpp}::TestSystem , gmx::BenchmarkSystem , gmx::test::TestSystem , gmx::Selection
• check() : gmx::test::anonymous_namespace{constr.cpp}::ConstraintsVerifier , ExclusionChecker::Impl
• check_atom_id() : gmx::ColvarProxyGromacs
• checkAbilityDependencies() : gmx::IOutputAdapter , gmx::OutputSelector , gmx::SetAtoms , gmx::SetBox , gmx::SetForces , gmx::SetPrecision , gmx::SetStartTime , gmx::SetTimeStep , gmx::SetVelocities
• checkAny() : gmx::test::TestReferenceChecker
• checkBlocka() : gmx::test::anonymous_namespace{indexutil.cpp}::IndexBlockTest
• checkBoolean() : gmx::test::TestReferenceChecker
• checkChar() : gmx::test::TestReferenceChecker
• checkCompound() : gmx::test::TestReferenceChecker
• checkConstrainsSatisfied() : gmx::test::anonymous_namespace{settle.cpp}::SettleTest
• checkDouble() : gmx::test::TestReferenceChecker
• checkEdrFile() : gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest
• checkEmptySequence() : gmx::test::TestReferenceChecker
• checkEnergies() : gmx::test::anonymous_namespace{pmetest.cpp}::PmeTest
• checkEnergyCaluclationFrequency() : gmx::DensityFittingOptions
• checkEnergyGroups() : gmx::TestParticleInsertion
• checkEntry() : gmx::test::TestReferenceChecker::Impl
• checker() : gmx::test::StringTestBase
• checker_ : gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest , gmx::test::anonymous_namespace{langevin.cpp}::LangevinTest , gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTest , gmx::test::anonymous_namespace{settle.cpp}::SettleTest
• checkFile() : gmx::test::IFileMatcher
• checkFileContents() : gmx::test::StringTestBase
• checkFinalPositions() : gmx::test::anonymous_namespace{settle.cpp}::SettleTest
• checkFinalVelocities() : gmx::test::anonymous_namespace{settle.cpp}::SettleTest
• checkFloat() : gmx::test::TestReferenceChecker
• checkIndexGroup() : gmx::SelectionTreeElement
• checkInt32() : gmx::test::TestReferenceChecker
• checkInt64() : gmx::test::TestReferenceChecker
• checkInteger() : gmx::test::TestReferenceChecker
• checkKeyValueTreeObject() : gmx::test::TestReferenceChecker
• checkKeyValueTreeValue() : gmx::test::TestReferenceChecker
• checkMdrun() : gmx::test::DensityFittingTest , gmx::test::BondedInteractionsTest
• checkModuleProperties() : gmx::AnalysisDataModuleManager::Impl
• checkModuleProperty() : gmx::AnalysisDataModuleManager::Impl
• checkMultiBodyDistance : gmx::anonymous_namespace{domainpaircomm.cpp}::DistanceCalculationInfo
• checkOutputFiles() : gmx::test::CommandLineTestHelper , gmx::test::CommandLineTestBase
• checkpointData() : gmx::ReadCheckpointDataHolder , gmx::WriteCheckpointDataHolder
• checkpointedData_ : gmx::MDModulesCheckpointReadingDataOnMain
• CheckpointError() : gmx::CheckpointError
• CheckpointHandler() : gmx::CheckpointHandler
• CheckpointHelper() : gmx::CheckpointHelper
• CheckpointHelperBuilder() : gmx::CheckpointHelperBuilder
• checkpointID() : gmx::FreeEnergyPerturbationData , gmx::StatePropagatorData
• checkpointingNotifier_ : gmx::MDModulesNotifiers
• checkpointOptions : gmx::MdrunOptions
• checkPresent() : gmx::test::TestReferenceChecker
• checkReal() : gmx::test::TestReferenceChecker
• checkRealFromString() : gmx::test::TestReferenceChecker
• checkRedirectedFiles() : gmx::test::TestFileOutputRedirector
• checkRedirectedOutput() : gmx::test::CommandLineModuleManagerTestBase
• checkReferencePoints() : gmx::test::MockAnalysisDataModule::Impl
• checkRerun() : gmx::test::MimicTest
• checkSequence() : gmx::test::TestReferenceChecker
• checkSequenceArray() : gmx::test::TestReferenceChecker
• checkSequenceCompound() : gmx::test::TestReferenceChecker
• checkSession() : gmx::test::InteractiveTestHelper
• checkStream() : gmx::test::anonymous_namespace{msd.cpp}::MsdMatcher , gmx::test::ITextBlockMatcher
• checkString() : gmx::test::TestReferenceChecker
• checkText() : gmx::test::StringTestBase
• checkTextBlock() : gmx::test::TestReferenceChecker
• checkTopologyInfo() : gmx::test::NNPotTopologyPreprocessorTest
• checkTwoBodyDistance : gmx::anonymous_namespace{domainpaircomm.cpp}::DistanceCalculationInfo
• checkUChar() : gmx::test::TestReferenceChecker
• checkUInt32() : gmx::test::TestReferenceChecker
• checkUInt64() : gmx::test::TestReferenceChecker
• checkUnsortedAtoms() : gmx::SelectionTreeElement
• checkUnusedEntries() : gmx::test::TestReferenceChecker
• checkValue() : gmx::test::TestReferenceChecker
• checkVector() : gmx::test::TestReferenceChecker
• checkVirial() : gmx::test::anonymous_namespace{settle.cpp}::SettleTest
• checkVirialSymmetric() : gmx::test::anonymous_namespace{settle.cpp}::SettleTest
• child : gmx::SelectionTreeElement , gmx::anonymous_namespace{exceptions.cpp}::ErrorMessage
• ci : gmx::AnalysisDataDisplacementModule::Impl , gmx::nbnxn_ci_t , gmx::NbnxnPairlistCpu
• cIdAttrName : gmx::test::TestReferenceChecker::Impl
• cInt32NodeName : gmx::test::TestReferenceChecker::Impl
• cInt64NodeName : gmx::test::TestReferenceChecker::Impl
• cIntegerNodeName : gmx::test::TestReferenceChecker::Impl
• ciOuter : gmx::NbnxnPairlistCpu
• cj : gmx::nbnxn_cj_t , gmx::nbnxn_cj_packed_t , gmx::NbnxnPairlistCpu , gmx::NbnxmPairlistCpuWork , gmx::JClusterList , gmx::PackedJClusterList
• cj_ind_end : gmx::nbnxn_ci_t
• cj_ind_start : gmx::nbnxn_ci_t
• cjOuter : gmx::NbnxnPairlistCpu
• cjPacked : gmx::GpuPairlist
• cjPackedBegin : gmx::nbnxn_sci_t
• cjPackedEnd : gmx::nbnxn_sci_t
• classId : gmx::HardwareTopology::Device
• clear() : gmx::HashedMap< T > , gmx::PaddedVector< T, Allocator > , gmx::UpdateGroupsCog , SystemMomentum , t_nblist , gmx::TextTableFormatter , gmx::OptionValueStoreNull< T > , gmx::RestraintManager::Impl , gmx::RestraintManager , gmx::FixedCapacityVector< typename, size_t > , gmx::MessageStringCollector , gmx::AnalysisDataValue , gmx::internal::EnumIndexStore< EnumType > , gmx::IOptionValueStore< T > , gmx::RangePartitioning , InteractionList , InteractionDefinitions , gmx::FlagsTemplate< FlagType > , gmx::ListOfLists< typename > , gmx::AnalysisDataFrameLocalDataSetHandle< ValueType > , gmx::AnalysisDataFrameLocalDataHandle< ValueType > , gmx::DomainCommBackward , gmx_ga2la_t
• clearAll() : gmx::FlagsTemplate< FlagType >
• clearAndResizeHashTable() : gmx::HashedMap< T >
• clearEnergies() : gmx::ListedForcesGpu::Impl , gmx::EnergyAccumulator< false, true >
• clearEnergiesAndSetEnergyGroupsForJClusters() : gmx::EnergyAccumulator< true, true >
• clearFlag() : gmx::AbstractOptionStorage , gmx::AbstractOption
• clearForceBuffer() : gmx::nbnxn_atomdata_t
• clearForcesAndEnergies() : gmx::ThreadForceBuffer< ForceBufferElementType >
• clearFrame() : gmx::internal::AnalysisDataStorageFrameData
• clearGpuFBufferEarly : gmx::StepWorkload
• clearHist() : gmx::ComputeDebyeScattering
• clearIfNeeded() : ChainIdFiller
• clearSet() : gmx::AbstractOptionStorage , gmx::OptionStorageTemplate< T >
• clearSymbolTable() : gmx::SelectionCollection::Impl
• ClfftInitializer() : gmx::ClfftInitializer
• ClHandle() : gmx::ClHandle< cl_type >
• Client : gmx::NeighborSearchSignaller , gmx::LastStepSignaller , gmx::LoggingSignaller , gmx::TrajectorySignaller , gmx::EnergySignaller
• clientID() : gmx::EnergyData::Element , gmx::ExpandedEnsembleElement , gmx::FirstOrderPressureCoupling , gmx::FreeEnergyPerturbationData::Element , gmx::ICheckpointHelperClient , gmx::MttkData , gmx::NoseHooverChainsData , gmx::ParrinelloRahmanBarostat , gmx::PullElement , gmx::StatePropagatorData::Element , gmx::VelocityScalingTemperatureCoupling
• clientsocket : gmx::ImdSession::Impl
• clone() : gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityInnerProduct , gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityRelativeEntropy , gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityCrossCorrelation , gmx::AbstractAverageHistogram
• cloneOnSpawnedThread() : gmx::Mdrunner
• close() : gmx::StandardInputStream , gmx::TextInputFile , gmx::TextOutputFile , gmx::StringOutputStream , gmx::StringInputStream , gmx::TextReader , gmx::TextInputStream , gmx::TextOutputStream , gmx::TextWriter
• closeAfterForceComputationCpu() : DDBalanceRegionHandler
• closeAfterForceComputationGpu() : DDBalanceRegionHandler
• closeTimingRegion() : GpuRegionTimerWrapper< GpuRegionTimerImpl > , GpuRegionTimerImpl
• clusterFlags() : gmx::Grid
• clusterIsPerturbed() : gmx::Grid
• CMainCommandLineModule() : gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule
• CMainFunction : gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule , gmx::CommandLineModuleManager
• cmap : InteractionsOfType , gmx_cmapdata_t
• cmap_grid : gmx_ffparams_t , InteractionDefinitions
• cmapAtomTypes : InteractionsOfType
• cmapdata : gmx_cmap_t
• cmapGridSpacing_ : InteractionsOfType
• cmapResTypes_ : InteractionsOfType
• cmpop : t_methoddata_compare
• cmpt : t_methoddata_compare
• cObjectType : gmx::test::TestReferenceChecker::Impl
• code : t_mapping
• coefficientsCapacity : PmeGpuSpecific
• coefficientsSize : PmeGpuSpecific
• cog() : gmx::UpdateGroupsCog
• cogForAtom() : gmx::UpdateGroupsCog
• cogIndex() : gmx::UpdateGroupsCog
• cogIsFillerParticle() : gmx::UpdateGroupsCog
• coll : gmx_ana_poscalc_t
• collection_ : gmx::SelectionOptionManager::Impl
• collectiveIndex() : gmx::LocalAtomSet
• columnCount() : gmx::AnalysisDataStorageFrame , gmx::AnalysisDataFrameAverager , gmx::test::AnalysisDataTestInput , gmx::AbstractAnalysisData , gmx::AnalysisDataPointSetRef
• columnCounts_ : gmx::AbstractAnalysisData::Impl
• columnData() : gmx::TextTableFormatter::Impl
• ColumnData() : gmx::TextTableFormatter::Impl::ColumnData
• ColumnList : gmx::TextTableFormatter::Impl
• columnRowSectionStart_ : gmx::MrcDensityMapHeader
• columnRowSectionToXyz_ : gmx::MrcDensityMapHeader
• columns_ : gmx::TextTableFormatter::Impl
• columnsReceived() : gmx::DomainCommForward
• columnsToSend() : gmx::DomainCommBackward
• ColvarProxyGromacs() : gmx::ColvarProxyGromacs
• colvarsAtomCoords() : gmx::ColvarsOptions
• colvarsConfigContent() : gmx::ColvarsOptions
• colvarsEnsTemp() : gmx::ColvarsOptions
• colvarsFileName() : gmx::ColvarsOptions
• ColvarsForceProvider() : gmx::ColvarsForceProvider
• colvarsInputFiles() : gmx::ColvarsOptions
• ColvarsMDModule() : gmx::anonymous_namespace{colvarsMDModule.cpp}::ColvarsMDModule , gmx::anonymous_namespace{colvarsMDModule_stub.cpp}::ColvarsMDModule
• colvarsOutputPrefix() : gmx::ColvarsOptions
• ColvarsPreProcessor() : gmx::ColvarsPreProcessor
• colvarsSeed() : gmx::ColvarsOptions
• colvarStateFile_ : gmx::ColvarsForceProviderState
• com() : ComSumContents
• combineMtsForcesBeforeHaloExchange : gmx::StepWorkload
• comm() : gmx::ColvarsSimulationsParameters
• comm_ : gmx::PhysicalNodeCommunicator
• commandLine() : gmx::anonymous_namespace{programcontext.cpp}::DefaultProgramContext
• CommandLine() : gmx::test::CommandLine
• commandLine() : gmx::CommandLineProgramContext , gmx::test::CommandLineTestBase , gmx::test::anonymous_namespace{testinit.cpp}::TestProgramContext , gmx::IProgramContext
• commandLineForMdrun_ : gmx::test::DensityFittingTest
• CommandLineHelpContext() : gmx::CommandLineHelpContext
• CommandLineHelpModule() : gmx::CommandLineHelpModule
• CommandLineHelpWriter() : gmx::CommandLineHelpWriter
• CommandLineModuleGroup() : gmx::CommandLineModuleGroup
• CommandLineModuleGroupData() : gmx::CommandLineModuleGroupData
• CommandLineModuleManager() : gmx::CommandLineModuleManager
• CommandLineParser() : gmx::CommandLineParser
• CommandLineProgramContext() : gmx::CommandLineProgramContext
• CommandLineTestHelper() : gmx::test::CommandLineTestHelper
• CommandsHelpTopic() : gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::CommandsHelpTopic
• commentChar_ : gmx::TextReader::Impl
• commGuard_ : gmx::PhysicalNodeCommunicator
• commitValues() : gmx::OptionStorageTemplate< T >
• common : PmeGpu
• commRec_ : gmx::SimulatorEnv
• communicateHaloCoordinates() : gmx::GpuHaloExchange::Impl , gmx::GpuHaloExchange
• communicateHaloForces() : gmx::GpuHaloExchange , gmx::GpuHaloExchange::Impl
• communicationBuffer() : gmx::ObservablesReducer
• communicationBuffer_ : gmx::ObservablesReducer::Impl , gmx::test::anonymous_namespace{observablesreducer.cpp}::Subscriber
• communicator_ : gmx::MDModulesCheckpointReadingBroadcast
• comp : swap_group
• comp_from : swap_group
• comp_now : swap_group
• compareAllFramePairs() : gmx::test::anonymous_namespace{exactcontinuation.cpp}::ContinuationFramePairManager< FrameReader > , gmx::test::FramePairManager< FrameReader >
• compareAllFrames() : gmx::test::MaxNumFrames
• compareFiles() : gmx::test::anonymous_namespace{extract_cluster.cpp}::ExtractClusterModuleTest
• compareRootEntry_ : gmx::test::internal::TestReferenceDataImpl , gmx::test::TestReferenceChecker::Impl
• compareto : gmx_help_make_index_group
• compareVectorEq() : gmx::test::SimdBaseTest
• compareVectorRealUlp() : gmx::test::SimdBaseTest
• comparisonSquaredSum : gmx::anonymous_namespace{densityfit.cpp}::CrossCorrelationEvaluationHelperValues
• compile() : gmx::SelectionCollection
• Compiled : gmx::SelectionCollection::Impl
• compileSelection : gmx::SelectionCollection
• completeDefaultFileName() : gmx::FileNameOptionManager
• completeFileName() : gmx::FileNameOptionManager
• completeReceiveF() : gmx::HaloExchange
• completeReceiveX() : gmx::HaloExchange
• completeSendF() : gmx::HaloExchange
• completeSendX() : gmx::HaloExchange
• completionWriter_ : gmx::CommandLineHelpContext::Impl
• complexGrid_ : gmx::Gpu3dFft::Impl
• complexGridSize : PmeGpuSpecific , PmeGpuGridParams , SolveKernelParams
• complexGridSizePadded : PmeGpuGridParams , SolveKernelParams
• CompositeSimulatorElement() : gmx::CompositeSimulatorElement
• compressed_symmetric : gmx_sparsematrix
• computeAverageCoveredFraction() : gmx::internal::SelectionData
• computeDhdl : gmx::StepWorkload
• computeDirectPairDistancesHistogram() : gmx::ComputeDebyeScattering
• computeEnergy : gmx::StepWorkload
• computeForces : gmx::StepWorkload
• ComputeGlobalsElement() : gmx::ComputeGlobalsElement< algorithm >
• computeIntensity() : gmx::ComputeDebyeScattering
• computeIntensityZeroQ() : gmx::ComputeDebyeScattering
• computeListedForces : gmx::StepWorkload
• computeMonteCarloPairDistancesHistogram() : gmx::ComputeDebyeScattering
• computeMuTot : gmx::SimulationWorkload
• computeNonbonded : gmx::SimulationWorkload
• computeNonbondedAtMtsLevel1 : gmx::SimulationWorkload
• computeNonbondedForces : gmx::StepWorkload
• computePmeOnSeparateRank : gmx::StepWorkload
• computeSlowForces : gmx::StepWorkload
• computeStorageLocation() : gmx::internal::AnalysisDataStorageImpl
• computeVirial : gmx::StepWorkload , gmx::ForceWithShiftForces
• computeVirial_ : gmx::ForceWithVirial
• computeVirialAndEnergy : gmx::NbnxmKernelBenchOptions
• con_index : gmx::Lincs
• conditionSatisfied() : gmx::test::anonymous_namespace{threadaffinity_mpi.cpp}::RequireEvenRankCountWithAtLeastFourRanks , gmx::test::AllowAnyRankCount , gmx::test::RequireRankCount< requiredNumRanks > , gmx::test::RequireMinimumRankCount< minimumNumRanks >
• connectWithMatchingPropagator() : gmx::ParrinelloRahmanBarostat , gmx::VelocityScalingTemperatureCoupling
• connectWithPropagator() : gmx::VRescaleTemperatureCoupling , gmx::NoseHooverChainsElement , gmx::ITemperatureCouplingImpl , gmx::BerendsenTemperatureCoupling , gmx::NoseHooverTemperatureCoupling
• consoleOptionsFormatter() : gmx::HelpWriterContext::Impl::SharedState
• const_iterator : gmx::ArrayRefWithPadding< typename > , gmx::MultiDimArray< TContainer, Extents, LayoutPolicy > , gmx::FixedCapacityVector< typename, size_t > , gmx::ArrayRef< typename >
• const_pointer : gmx::ArrayRefWithPadding< typename > , gmx::FixedCapacityVector< typename, size_t > , gmx::ArrayRef< typename >
• const_reference : gmx::MultiDimArray< TContainer, Extents, LayoutPolicy > , gmx::FixedCapacityVector< typename, size_t > , gmx::ArrayRef< typename >
• const_reverse_iterator : gmx::ArrayRef< typename > , gmx::FixedCapacityVector< typename, size_t >
• const_view_type : gmx::MultiDimArray< TContainer, Extents, LayoutPolicy >
• constantEnsembleTemperature_ : gmx::EnsembleTemperature
• constants : PmeGpuKernelParamsBase
• constArrayRefFromArray() : gmx::ArrayRef< typename >
• constArrayRefWithPadding() : gmx::PaddedVector< T, Allocator > , gmx::ArrayRefWithPadding< typename >
• constBox() : gmx::StatePropagatorData
• constEfl : anonymous_namespace{edsam.cpp}::t_edflood
• constForcesView() : gmx::StatePropagatorData
• constLambdaView() : gmx::FreeEnergyPerturbationData
• constPositionsView() : gmx::StatePropagatorData
• constPreviousBox() : gmx::StatePropagatorData
• constPreviousPositionsView() : gmx::StatePropagatorData
• constr : anonymous_namespace{minimize.cpp}::EnergyEvaluator , gmx::ConstraintsParam
• constr_ : gmx::LegacySimulatorData
• constraint_distance_squared : gmx::shakedata
• constraintCommunicationRange : gmx::DomdecOptions
• constraintRmsDeviation : gmx::Lincs
• constraints_ : gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest
• ConstraintsElement() : gmx::ConstraintsElement< variable >
• ConstraintsParam() : gmx::ConstraintsParam
• constraintVirial() : gmx::EnergyData
• construct() : gmx::PairlistSets , gmx::DefaultInitializationAllocator< T, A > , gmx::VirtualSitesHandler , gmx::VirtualSitesHandler::Impl
• constructingAtomIdx : gmx::test::anonymous_namespace{virtualsites.cpp}::VirtualSiteTest::VirtualSite
• constructLocalAtomSet() : gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting
• constructPairlist() : gmx::nonbonded_verlet_t
• constructPairlists() : gmx::PairlistSet
• constVelocitiesView() : gmx::StatePropagatorData
• constView() : gmx::MrcDensityMapOfFloatReader , gmx::GaussTransform3D
• contains() : gmx::test::CommandLine
• containsGroupName() : gmx::IndexGroupsAndNames
• context() : gmx::DeviceStreamManager
• context_ : gmx::DeviceStreamManager::Impl
• ContinuationFramePairManager() : gmx::test::anonymous_namespace{exactcontinuation.cpp}::ContinuationFramePairManager< FrameReader >
• convert() : gmx::OptionValueConverterSimple< OutType >
• convertCoordinates() : gmx::nonbonded_verlet_t
• convertCoordinatesGpu() : gmx::nonbonded_verlet_t
• ConverterType : gmx::OptionStorageTemplateSimple< T >
• convertFrame() : gmx::IFrameConverter , gmx::ProcessFrameConversion
• convertKernel() : GridConverter< pmeToFft >
• convertOptionValue() : gmx::SelectionOptionManager
• convertValue() : gmx::OptionStorageTemplate< T > , gmx::test::anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage , gmx::AbstractOptionStorage
• convolveForce : gmx::BiasParams
• coord_unit : t_pullcoord
• CoordData() : gmx::CorrelationBlockData::CoordData
• coordData() : gmx::CorrelationBlockData
• coordinate_ : gmx::RealFunctionvalueAtCoordinate , gmx::GaussianSpreadKernelParameters::PositionAndAmplitude
• coordinateManager_ : gmx::analysismodules::anonymous_namespace{msd.cpp}::MsdGroupData
• coordinates() : gmx::Selection , gmx::test::anonymous_namespace{pmegathertest.cpp}::TestSystem , gmx::BenchmarkSystem , gmx::test::TestSystem
• coordinates_ : gmx::test::FrictionMetricTest , gmx::OptimisationResult , gmx::test::BiasTest
• coordinatesComparison : gmx::test::TrajectoryFrameMatchSettings
• coordsel : UmbrellaOptions
• coordsendbuf : gmx::ImdSession::Impl
• CoordState() : gmx::CoordState
• coordState() : gmx::BiasState
• coordValue : gmx::GridPoint , gmx::CoordState
• copyAllOutputs : PmeGpuSettings
• copyAtoms() : gmx::TopologyInformation
• copyContents() : gmx::AbstractAnalysisArrayData
• copyright() : gmx::BinaryInformationSettings
• copyToLegacySymtab() : StringTable
• copyToMDForces() : gmx::ImdSession::Impl
• copyValues() : gmx::anonymous_namespace{pargs.cpp}::OptionsAdapter
• core_pinning_offset : gmx_hw_opt_t
• core_pinning_stride : gmx_hw_opt_t
• coreBits : gmx::anonymous_namespace{cpuinfo.cpp}::ApicIdLayout
• coreIdInPackage : gmx::CpuInfo::LogicalProcessor
• coreRankInPackage : gmx::HardwareTopology::LogicalProcessor
• cores : gmx::HardwareTopology::Package
• cORF : t_mdatoms
• cornersDiffer : gmx::anonymous_namespace{domainpaircomm.cpp}::ZoneCorners
• correctVirial() : DispersionCorrection::Correction
• CorrelationBlockData() : gmx::CorrelationBlockData
• CorrelationGrid() : gmx::CorrelationGrid
• correlationGrid_ : gmx::test::FrictionMetricTest
• correlationIntegral() : gmx::CorrelationBlockData
• CorrelationTensor() : gmx::CorrelationTensor
• coulomb_tab : gmx::NBParamGpu
• coulomb_tab_scale : gmx::cl_nbparam_params , gmx::NBParamGpu
• coulomb_tab_texobj : gmx::NBParamGpu
• coulombKernelType : gmx::test::anonymous_namespace{kernel_test.cpp}::KernelInputParameters
• coulombType : gmx::test::anonymous_namespace{kernel_test.cpp}::KernelOptions , gmx::NbnxmKernelBenchOptions
• count() : gmx_ana_pos_t
• Count : gmx::SelectionCollection::Impl
• count : pme_setup_t
• Count : ListedForces
• count() : gmx::SelectionOptionManager::Impl::SelectionRequest , gmx::nbnxn_cycle_t
• countArray_ : gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData
• counter_type : gmx::ThreeFry2x64General< rounds, internalCounterBits >
• countRestraints() : gmx::RestraintManager
• couplingTime : gmx::TemperatureCouplingData
• couplingTimeStep : gmx::TemperatureCouplingData
• covariance : gmx::anonymous_namespace{densityfit.cpp}::CrossCorrelationEvaluationHelperValues
• coveredFraction() : gmx::Selection
• coverRadius() : gmx::BiasParams
• covers() : gmx::BiasGrid
• cp0 : gmx::PairsearchWork , gmx::NbnxnPairlistCpu , gmx::NbnxmPairlistCpuWork
• cp1 : gmx::NbnxnPairlistCpu , gmx::NbnxmPairlistCpuWork , gmx::PairsearchWork
• Cprev : t_bb
• cpuLimit() : gmx::HardwareTopology
• cpuLists() : gmx::PairlistSet
• cr : anonymous_namespace{minimize.cpp}::EnergyEvaluator
• cr0 : dd_corners_t
• cr1 : dd_corners_t
• cr_ : gmx::NNPotParameters , gmx::ForceProviderInput , ExclusionChecker::Impl , gmx::ImdSession::Impl , gmx::DomainDecompositionBuilder::Impl , gmx::LegacySimulatorData , gmx::LocalTopologyChecker::Impl , gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest
• cRealNodeName : gmx::test::TestReferenceChecker::Impl
• create() : gmx::anonymous_namespace{cmdlineprogramcontext.cpp}::DefaultExecutableEnvironment , gmx::SelectionParserParameter , gmx::DensityFittingModuleInfo , gmx::Any , gmx::SelectionParserParameter , gmx::ConvertTprInfo , gmx::QMMMModuleInfo , gmx::RestraintMDModule , gmx::NonbondedBenchmarkInfo , gmx::ColvarsModuleInfo , gmx::NNPotModuleInfo , gmx::PlumedModuleInfo
• createArray() : gmx::KeyValueTreeValueBuilder
• createCalculation() : gmx::PositionCalculationCollection::Impl , gmx::PositionCalculationCollection
• createCalculationFromEnum() : gmx::PositionCalculationCollection
• createEmpty() : gmx::SelectionLocation
• createEntry() : gmx::test::TestReferenceChecker::Impl
• createExecutableGraph() : gmx::MdGpuGraph::Impl
• createExpr() : gmx::SelectionParserValue
• createFileMatcher() : gmx::test::IFileMatcherSettings , gmx::test::NoContentsMatch , gmx::test::TextFileMatch
• createFromExpression() : gmx::SelectionParserParameter
• createInteger() : gmx::SelectionParserValue
• createIntegerRange() : gmx::SelectionParserValue
• createList() : gmx::SelectionParserValue , gmx::SelectionParserParameter , gmx::SelectionParserValue
• createMatcher() : gmx::test::XvgMatch , gmx::test::FilteringExactTextMatch , gmx::test::ConfMatch , gmx::test::NoTextMatch , gmx::test::ExactTextMatch , gmx::test::ITextBlockMatcherSettings
• createModule() : gmx::ICommandLineOptionsModule , gmx::test::TrajectoryAnalysisModuleTestFixture< ModuleInfo > , gmx::TrajectoryAnalysisCommandLineRunner , gmx::test::AbstractTrajectoryAnalysisModuleTestFixture , gmx::test::anonymous_namespace{extract_cluster.cpp}::ExtractClusterModuleTest
• createModuleHelpTopic() : gmx::CommandLineHelpModule
• createObject() : gmx::KeyValueTreeValueBuilder
• createPosition() : gmx::SelectionParserValue
• createReal() : gmx::SelectionParserValue
• createRealRange() : gmx::SelectionParserValue
• createStorage() : gmx::AbstractOptionSection , gmx::AbstractOption
• createString() : gmx::SelectionParserValue
• createTrajectoryFrameWriter : gmx::TrajectoryFrameWriter
• CreationHelper() : gmx::Constraints::CreationHelper
• creatorProgramName() : gmx::H5md
• creatorProgramVersion() : gmx::H5md
• cross() : gmx::BasicVector< ValueType >
• CrossCorrelationGradientAtVoxel() : gmx::anonymous_namespace{densityfit.cpp}::CrossCorrelationGradientAtVoxel
• cSequenceLengthName : gmx::test::TestReferenceChecker::Impl
• cSequenceType : gmx::test::TestReferenceChecker::Impl
• cStringNodeName : gmx::test::TestReferenceChecker::Impl
• csv : gmx::BenchmarkSystem
• cTC : t_mdatoms
• cTC_ : gmx::Update::Impl
• cU1 : t_mdatoms
• cU2 : t_mdatoms
• CubicSplineTable() : gmx::CubicSplineTable
• cUCharNodeName : gmx::test::TestReferenceChecker::Impl
• cUInt32NodeName : gmx::test::TestReferenceChecker::Impl
• cUInt64NodeName : gmx::test::TestReferenceChecker::Impl
• cum : t_UmbrellaWindow
• current : PmeGpuKernelParamsBase
• currentFEPState() : gmx::FreeEnergyPerturbationData
• currentFrame() : gmx::AnalysisDataStorage
• currentFrame_ : gmx::internal::AnalysisDataHandleImpl
• currentLambdaState : gmx::test::anonymous_namespace{freeenergyparameters.cpp}::FreeEnergyParameterTestParameters
• currentLifetimes_ : gmx::AnalysisDataLifetimeModule::Impl
• currentLocation : gmx_sel_lexer_t
• currentOption_ : gmx::OptionsAssigner::Impl
• currentPosition() : gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator
• currentSection() : gmx::OptionsAssigner::Impl
• currentSelection() : gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator
• currentTopic() : gmx::HelpManager::Impl
• currentTopicAsString() : gmx::HelpManager::Impl
• currentValueCount_ : gmx::OptionsAssigner::Impl
• currentValuesSelected() : gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator
• currIndex_ : gmx::AnalysisDataModuleManager::Impl
• currsize : gmx_sel_mempool_t
• currValues_ : gmx::AnalysisDataDisplacementModule::Impl
• cutoff : t_methoddata_distance
• cutoffSquaredBonded : gmx::anonymous_namespace{domainpaircomm.cpp}::DistanceCalculationInfo
• cutoffSquaredNonbonded : gmx::anonymous_namespace{domainpaircomm.cpp}::DistanceCalculationInfo
• cVCM : t_mdatoms
• cVectorType : gmx::test::TestReferenceChecker::Impl
• cxy_ind : gmx::NbnxmGpu , gmx::Grid , gmx::NbnxmGpu
• cxy_na : gmx::NbnxmGpu , gmx::Grid , gmx::NbnxmGpu
• cycleCounter : gmx::PairsearchWork
• cycleCounting_ : gmx::PairSearch
• cycles : gmx_pme_comm_vir_ene_t , pme_setup_t
• cyclesLastCpu : BalanceRegion::Impl
• cyclesOpenCpu : BalanceRegion::Impl
• cyclesPerPair : gmx::NbnxmKernelBenchOptions