Here is a list of all documented class members with links to the class documentation for each member:

- d -

• d2a : gmx::analysismodules::anonymous_namespace{sasa.cpp}::t_conect
• d2b : gmx::analysismodules::anonymous_namespace{sasa.cpp}::t_conect
• d3 : t_bb
• d4 : t_bb
• d5 : t_bb
• d_cell : gmx::cellInfo
• d_coefficients : PmeGpuAtomParams
• d_coordinates : PmeGpuAtomParams
• d_dtheta : PmeGpuAtomParams
• d_fftComplexGrid : PmeGpuGridParams
• d_fftRealGrid : PmeGpuSpecific
• d_forces : PmeGpuAtomParams
• d_fractShiftsTable : PmeGpuGridParams
• d_gridlineIndices : PmeGpuAtomParams
• d_gridlineIndicesTable : PmeGpuGridParams
• d_realGrid : PmeGpuGridParams
• d_recvBuf_ : gmx::NvshmemPpCommData
• d_recvBufCapacity_ : gmx::NvshmemPpCommData
• d_recvBufSize_ : gmx::NvshmemPpCommData
• d_recvGrids : PmeGpuHaloExchange
• d_rollingPruningPart : gmx::GpuPairlist
• d_rollingPruningPartAllocationSize : gmx::GpuPairlist
• d_rollingPruningPartSize : gmx::GpuPairlist
• d_sendGrids : PmeGpuHaloExchange
• d_signalReceiverRankF_ : gmx::nvshmemHaloExchangeOps
• d_signalReceiverRankX_ : gmx::nvshmemHaloExchangeOps
• d_signalSenderRankX_ : gmx::nvshmemHaloExchangeOps
• d_splineModuli : PmeGpuGridParams
• d_theta : PmeGpuAtomParams
• d_virialAndEnergy : PmeGpuConstParams
• data : gmx_enfrot , t_forcetable , gmx::AwhEnergyBlock , gmx::PaddedVector< T, Allocator > , gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy > , gmx::FixedCapacityVector< typename, size_t > , gmx::ArrayRef< typename > , gmx::EnumerationArray< EnumType, DataType, ArraySize > , gmx_sparsematrix
• data_ : gmx::internal::AnalysisDataHandleImpl , gmx::internal::AnalysisDataStorageImpl , gmx::MrcDensityMapOfFloatReader::Impl , gmx::MrcDensityMapOfFloatWriter::Impl , gmx::GaussTransform3D::Impl , gmx::test::anonymous_namespace{indexutil.cpp}::IndexBlockTest
• DataFileFinder : gmx::DataFileOptions , gmx::DataFileFinder
• DataFileInfo() : gmx::DataFileInfo
• DataFileOptions() : gmx::DataFileOptions
• dataFinished() : gmx::AnalysisDataLifetimeModule , gmx::AbstractPlotModule , gmx::AnalysisDataProxy , gmx::internal::BasicAverageHistogramModule , gmx::analysismodules::anonymous_namespace{select.cpp}::IndexFileWriterModule , gmx::IAnalysisDataModule , gmx::AnalysisDataModuleSerial , gmx::AnalysisDataModuleParallel , gmx::AnalysisDataAverageModule , gmx::AnalysisDataFrameAverageModule , gmx::AnalysisDataDisplacementModule , gmx::AnalysisDataSimpleHistogramModule , gmx::AnalysisDataWeightedHistogramModule , gmx::AnalysisDataBinAverageModule
• dataHandle() : gmx::TrajectoryAnalysisModuleData
• dataID() : gmx::MttkData , gmx::MttkPropagatorConnection , gmx::NoseHooverChainsData
• dataMode_ : gmx::MrcDensityMapHeader
• DataProperty : gmx::AnalysisDataModuleManager
• dataPropertyAboutToChange() : gmx::AnalysisDataModuleManager
• dataSet() : gmx::AnalysisDataFrameLocalDataHandle< ValueType >
• DatasetContainer : gmx::TrajectoryAnalysisModule::Impl
• datasetCount() : gmx::TrajectoryAnalysisModule
• dataSetCount() : gmx::AnalysisDataFrameLocalDataHandle< ValueType > , gmx::test::AnalysisDataTestInput , gmx::AbstractAnalysisData
• datasetFromIndex() : gmx::TrajectoryAnalysisModule
• datasetFromName() : gmx::TrajectoryAnalysisModule
• DataSetHandle : gmx::AnalysisDataFrameLocalDataHandle< ValueType > , gmx::AnalysisDataFrameLocalData< ValueType >
• dataSetIndex() : gmx::test::AnalysisDataTestInputPointSet , gmx::AnalysisDataPointSetRef
• datasetNames() : gmx::TrajectoryAnalysisModule
• datasetNames_ : gmx::TrajectoryAnalysisModule::Impl
• datasets_ : gmx::TrajectoryAnalysisModule::Impl
• dataStarted() : gmx::AnalysisDataProxy , gmx::internal::BasicAverageHistogramModule , gmx::analysismodules::anonymous_namespace{select.cpp}::IndexFileWriterModule , gmx::IAnalysisDataModule , gmx::AnalysisDataModuleSerial , gmx::AnalysisDataAverageModule , gmx::AnalysisDataFrameAverageModule , gmx::AnalysisDataDisplacementModule , gmx::AnalysisDataBinAverageModule , gmx::AnalysisDataLifetimeModule , gmx::AbstractPlotModule
• dataStatistics_ : gmx::MrcDensityMapHeader
• DataStorageRequester() : gmx::test::anonymous_namespace{mock_datamodule.cpp}::DataStorageRequester
• db : AtomProperty
• dd_nc : CheckpointHeaderContents
• DDBalanceRegionHandler() : DDBalanceRegionHandler
• ddBondedChecking : gmx::DomdecOptions
• ddBondedChecking_ : ReverseTopOptions
• ddbox_ : gmx::DomainDecompositionBuilder::Impl
• ddBoxIsDynamic : UnitCellInfo
• ddCellIndex_ : gmx::DomainDecompositionBuilder::Impl
• ddDimensions : DDGridSetup
• ddGridSetup_ : gmx::DomainDecompositionBuilder::Impl
• ddist : gmx::Lincs
• ddp_count : t_state
• ddp_count_cg_gl : t_state
• ddpCountPairSearch : anonymous_namespace{minimize.cpp}::EnergyEvaluator
• ddRankSetup_ : gmx::DomainDecompositionBuilder::Impl
• ddSettings_ : gmx::DomainDecompositionBuilder::Impl
• ddZone() : gmx::Grid
• deallocate() : gmx::Allocator< T, AllocationPolicy >
• deallocateComplexGrid() : gmx::Gpu3dFft::Impl
• debug : gmx::MDLogger
• DebugLevel : gmx::SelectionCollection::Impl
• debugLevel() : gmx::CommandLineCommonOptionsHolder
• debugLevel_ : gmx::SelectionCollection::Impl
• decay() : gmx::accessor_basic< ElementType >
• decideIfCheckpointingThisStep() : gmx::CheckpointHandler
• def : AtomProperty
• defaultBasename() : gmx::FileNameOption
• defaultEnergyTermsToCompare() : gmx::test::EnergyComparison
• defaultEnumIndex() : gmx::StringOption
• defaultExtension() : gmx::FileNameOptionStorage , gmx::FileNameOptionInfo
• defaultFileName_ : gmx::FileNameOptionManager::Impl
• defaultFloatTolerance() : gmx::test::FloatingPointTolerance
• defaultNiceLevel() : gmx::CommandLineModuleSettings
• defaultNstImd : gmx::ImdSession::Impl
• defaultRealTolerance() : gmx::test::FloatingPointTolerance
• defaultRealUlpTol() : gmx::test::SimdBaseTest
• defaultSelectionText() : gmx::SelectionOption
• defaultTolerance : gmx::CubicSplineTable , gmx::QuadraticSplineTable
• defaultTolerance_ : gmx::test::TestReferenceChecker::Impl
• defaultType() : gmx::FileNameOption
• defaultValue() : gmx::BooleanOptionStorage , gmx::OptionTemplate< T, U > , gmx::BooleanOptionInfo
• defaultValueIfSet() : gmx::OptionTemplate< T, U >
• defaultValueIfSetExists() : gmx::AbstractOptionStorage
• defaultValues() : gmx::AbstractOptionStorage , gmx::OptionStorageTemplate< T > , gmx::SelectionFileOptionStorage , gmx::OptionInfo
• defaultValuesAsStrings() : gmx::AbstractOptionStorage , gmx::OptionStorageTemplate< T > , gmx::SelectionFileOptionStorage , gmx::OptionInfo
• defining_atomnames : gmx_help_make_index_group
• deform : gmx::BoxDeformationHandle , gmx::Update
• deform_ : gmx::LegacySimulatorData
• degangle : gmx_potfit , gmx_enfrotgrp
• dekindl : ekinstate_t
• delta : gmx::shakedata
• delta_t : gmx::SimulationTimeStep
• deltaF : anonymous_namespace{edsam.cpp}::t_edflood
• deltaF0 : anonymous_namespace{edsam.cpp}::t_edflood
• deltaH() : ForeignLambdaTerms
• deltaLambda : gmx::test::anonymous_namespace{freeenergyparameters.cpp}::FreeEnergyParameterTestParameters
• deltaQ : t_swap
• density : gmx::DensitySimilarityMeasure
• densityDataCopy() : gmx::MrcDensityMapOfFloatFromFileReader
• DensityFitting() : gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting
• DensityFittingAmplitudeLookup() : gmx::DensityFittingAmplitudeLookup
• DensityFittingForce() : gmx::DensityFittingForce
• DensityFittingForceProvider() : gmx::DensityFittingForceProvider
• DensitySimilarityCrossCorrelation() : gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityCrossCorrelation
• DensitySimilarityInnerProduct() : gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityInnerProduct
• DensitySimilarityMeasure() : gmx::DensitySimilarityMeasure
• DensitySimilarityRelativeEntropy() : gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityRelativeEntropy
• derivative : gmx::AnalyticalSplineTableInput , gmx::NumericalSplineTableInput
• desc : t_pargs , t_mapping , gmx::AnalyticalSplineTableInput , gmx::NumericalSplineTableInput
• DescribeNegationTo() : gmx::test::FloatTypeMatcher< FloatType > , gmx::test::RVecMatcher< FloatType >
• DescribeTo() : gmx::test::FloatTypeMatcher< FloatType > , gmx::test::RVecMatcher< FloatType >
• description : gmx::RocfftPlan , gmx::AbstractOptionStorage , gmx::SelectionOptionManager::Impl::SelectionRequest , gmx::test::TestDevice , gmx::OptionTemplate< T, U >
• deserialize() : gmx::ReadCheckpointDataHolder
• destinations : gmx_repl_ex
• destroyGpuHaloExchangeNvshmemBuf() : gmx::GpuHaloExchange , gmx::GpuHaloExchange::Impl
• detect() : gmx::CpuInfo , gmx::HardwareTopology
• dev : gmx::HardwareTopology::Device
• dev_rundata : gmx::NbnxmGpu
• deviceContext() : gmx::test::TestDevice
• deviceContext_ : PmeGpuProgramImpl , PmeGpuSpecific , gmx::NbnxmGpu
• deviceDetectionWarnings_ : gmx::DeviceDetectionResult
• deviceId : gmx::HardwareTopology::Device
• deviceId_ : gmx::GpuTaskMapping
• deviceIdsAssigned() : gmx::GpuTaskAssignments
• deviceInfo() : gmx::DeviceStreamManager , gmx::test::TestDevice
• deviceInfoList_ : gmx::DeviceDetectionResult
• devices : gmx::HardwareTopology::Machine
• devicesSelectedByUser : gmx_hw_opt_t
• deviceStream() : gmx::test::TestDevice
• DeviceStream() : DeviceStream
• DeviceStreamManager() : gmx::DeviceStreamManager
• deviceStreams : gmx::NbnxmGpu
• deviceVendor : DeviceInformation
• dfhist : t_state
• dhdlambda : anonymous_namespace{lincs.cpp}::Task
• dHH : SettleWaterTopology
• diagonal_2xnn_j_minus_i : gmx::nbnxn_atomdata_t::SimdMasks
• diagonal_4xn_j_minus_i : gmx::nbnxn_atomdata_t::SimdMasks
• diagonalVirial() : gmx::ThreadForceBuffer< ForceBufferElementType >
• didOutput() : gmx::TextTableFormatter
• didPairlistH2D : gmx::GpuTimers::Interaction , gmx::NbnxmGpu
• didPrune : gmx::GpuTimers::Interaction , gmx::NbnxmGpu
• didRollingPrune : gmx::GpuTimers::Interaction , gmx::NbnxmGpu
• difference_type : gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy > , gmx::internal::SimdArrayRef< T > , gmx::FixedCapacityVector< typename, size_t > , gmx::ArrayRef< typename >
• diffusionCoefficient : gmx::analysismodules::anonymous_namespace{msd.cpp}::MoleculeData , gmx::analysismodules::anonymous_namespace{msd.cpp}::MsdGroupData
• dihedrals : AllVsiteBondedInteractions
• Dihedrals : ListedForces
• dim : t_pullcoord , t_pbc
• dimensions() : gmx::Grid
• dimParams() : gmx::Bias , gmx::test::AwhTestParameters
• dimParams_ : gmx::DimParams
• dir_ : gmx::DataFileInfo
• directNeighborAtomRangeEnd() : gmx::DomdecZones
• DirectoryEnumerator() : gmx::DirectoryEnumerator
• disableForDomainIfAnyPpRankHasCpuForces() : gmx::MdGpuGraph::Impl
• disableInputOptionChecking() : gmx::FileNameOptionManager
• disablePmeRanks() : gmx::SeparatePmeRanksPermitted
• disableUnusedEntriesCheck() : gmx::test::TestReferenceChecker
• DisableUpdateSkips : gmx::BiasParams
• discard() : gmx::ThreeFry2x64General< rounds, internalCounterBits >
• disconnectClient() : gmx::ImdSession::Impl
• dispatchFreeEnergyKernels() : gmx::FreeEnergyDispatch , gmx::nonbonded_verlet_t
• dispatchNonbondedKernel() : gmx::nonbonded_verlet_t
• dispatchPruneKernel() : gmx::PairlistSet , gmx::PairlistSets
• dispatchPruneKernelCpu() : gmx::nonbonded_verlet_t
• dispatchPruneKernelGpu() : gmx::nonbonded_verlet_t
• dispersion_shift : gmx::NBParamGpu , gmx::cl_nbparam_params
• displayName() : gmx::CommandLineProgramContext , gmx::IProgramContext , gmx::test::anonymous_namespace{testinit.cpp}::TestProgramContext , gmx::anonymous_namespace{programcontext.cpp}::DefaultProgramContext
• disre_initf : history_t
• disre_rm3tav : history_t
• dist : swap_compartment
• distance2() : gmx::AnalysisNeighborhoodPair
• distance_squared_tolerance : gmx::shakedata
• distanceIJ : gmx::PairDistValue
• distArray_ : gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData
• distccut : methoddata_insolidangle
• distribution_type : gmx::ExponentialDistribution< RealType >::param_type , gmx::GammaDistribution< RealType >::param_type , gmx::NormalDistribution< RealType >::param_type , gmx::UniformIntDistribution< IntType >::param_type , gmx::TabulatedNormalDistribution< RealType, tableBits >::param_type , gmx::UniformRealDistribution< RealType >::param_type
• dlbOption : gmx::DomdecOptions
• dlbScaling : gmx::DomdecOptions
• doAll : gmx::NbnxmKernelBenchOptions
• doBool() : gmx::ISerializer , gmx::FileIOXdrSerializer
• doBoolArray() : gmx::ISerializer
• doChar() : gmx::FileIOXdrSerializer
• doCharArray() : gmx::FileIOXdrSerializer
• doCheckpoint() : df_history_t , gmx::NoseHooverGroup , ekinstate_t
• doCheckpointData() : gmx::NoseHooverTemperatureCoupling
• doDouble() : gmx::FileIOXdrSerializer
• doEnumArrayAsInt() : gmx::ISerializer
• doEnumAsInt() : gmx::ISerializer
• doFloat() : gmx::FileIOXdrSerializer
• dOH : SettleWaterTopology
• doInt() : gmx::FileIOXdrSerializer
• doInt32() : gmx::FileIOXdrSerializer
• doInt64() : gmx::FileIOXdrSerializer
• doIvec() : gmx::FileIOXdrSerializer
• doListedForcesSorting() : gmx_reverse_top_t
• domain : gmx::HardwareTopology::Device
• DomainCommBackward() : gmx::DomainCommBackward
• DomainCommForward() : gmx::DomainCommForward
• DomainDecompositionBuilder() : gmx::DomainDecompositionBuilder
• domainGroups : AtomDistribution
• DomainInfo() : gmx::DomainInfo
• DomainPairComm() : gmx::DomainPairComm
• DomainSetup() : gmx::GridSet::DomainSetup
• domainSetup() : gmx::GridSet
• domainShift() : gmx::DomainCommBackward
• domdec_ : gmx::DomainInfo
• DomDecHelper() : gmx::DomDecHelper , gmx::TopologyHolder
• domdecOptions : gmx::LegacyMdrunOptions
• doMdrun() : gmx::test::PeriodicActionsTest
• doMembed() : gmx::MembedHolder
• done() : gmx::AbstractAverageHistogram
• doNeighborSearch : gmx::StepWorkload
• donor_ : gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo
• donorEnergy_ : gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo
• doOpaque() : gmx::FileIOXdrSerializer
• doParsing_ : gmx::ColvarProxyGromacs
• doPmeLoadBalancing() : gmx::PmeLoadBalanceHelper
• doReal() : gmx::FileIOXdrSerializer
• doRerun_ : gmx::LegacySimulatorData
• doRvec() : gmx::FileIOXdrSerializer
• doRvecArray() : gmx::FileIOXdrSerializer
• doSimulationWork() : gmx::test::anonymous_namespace{observablesreducer.cpp}::Subscriber
• doSkippedUpdatesForAllPoints() : gmx::Bias , gmx::BiasState
• doSkippedUpdatesInNeighborhood() : gmx::BiasState
• doString() : gmx::FileIOXdrSerializer
• dot() : gmx::BasicVector< ValueType >
• doTestParticleInsertion_ : gmx::GridSet::DomainSetup
• double_prec : CheckpointHeaderContents
• doubleBlockLength() : gmx::CorrelationBlockData
• DoubleOption() : gmx::DoubleOption
• DoubleOptionInfo() : gmx::DoubleOptionInfo
• DoubleOptionStorage() : gmx::DoubleOptionStorage , gmx::DoubleOption
• doubleToler : gmx::test::anonymous_namespace{nb_free_energy.cpp}::ListInput , gmx::test::anonymous_namespace{pairs.cpp}::ListInput
• doUChar() : gmx::FileIOXdrSerializer
• doUCharArray() : gmx::FileIOXdrSerializer
• doUShort() : gmx::FileIOXdrSerializer
• dsspData_ : gmx::analysismodules::anonymous_namespace{dssp.cpp}::DsspStorageFrame
• dt : gmx::AnalysisDataDisplacementModule::Impl , anonymous_namespace{edsam.cpp}::t_edflood , UmbrellaOptions , t_UmbrellaWindow
• DTensors : t_oriresdata
• DTensorsEnsembleAv : t_oriresdata
• DTensorsTimeAndEnsembleAv : t_oriresdata
• DTensorsTimeAveragedHistory() : t_oriresdata
• dtoler : gmx::test::anonymous_namespace{bonded.cpp}::iListInput
• dtSample_ : gmx::CorrelationGrid
• dummy : gmx::gmx_cache_protect_t
• dummyMass : VirtualSiteConfiguration
• dummySelection_ : gmx::test::ModuleTest
• dummyTopology_ : gmx::test::ModuleTest
• dump() : gmx::ReadCheckpointDataHolder
• dv : pull_group_work_t
• dvdl : DispersionCorrection::Correction , gmx::ThreadForceBuffer< ForceBufferElementType >
• dvdl_lin : gmx_enerdata_t
• dvdl_nonlin : gmx_enerdata_t
• dvdLambda : gmx::test::anonymous_namespace{nb_free_energy.cpp}::OutputQuantities
• dvdlambda : gmx::test::anonymous_namespace{bonded.cpp}::OutputQuantities
• dvdLambda : gmx::test::anonymous_namespace{pairs.cpp}::OutputQuantities
• dx() : gmx::AnalysisDataPointSetRef , gmx::AnalysisDataFrameHeader , gmx::test::AnalysisDataTestInputFrame , gmx::AnalysisDataFrameRef , gmx::AnalysisNeighborhoodPair
• dxdf : gmx::VsiteThread
• dy() : gmx::AnalysisDataFrameRef , gmx::AnalysisDataPointSetRef
• dynamicGroup0 : pull_coord_work_t
• dynamicMask() : gmx::SelectionOption
• dynamicPruneTime : gmx_wallclock_gpu_nbnxn_t