Here is a list of all documented class members with links to the class documentation for each member:

- p -

• p : gmx_ana_poscalc_t , gmx_ana_selvalue_t , partition , t_methoddata_kweval , t_methoddata_distance , methoddata_permute
• p1 : methoddata_merge
• p2 : methoddata_merge
• packageIdInMachine : gmx::CpuInfo::LogicalProcessor
• packageRankInTopology : gmx::HardwareTopology::LogicalProcessor
• packages : gmx::HardwareTopology::Machine
• packCoordinateSendBuffer() : gmx::DomainCommBackward
• packedBoundingBoxes() : gmx::Grid
• packedJClustersAllocationSize : gmx::GpuPairlist
• paddedArrayRef() : gmx::ArrayRefWithPadding< typename >
• paddedConstArrayRef() : gmx::ArrayRefWithPadding< typename >
• paddedNumAtomsInColumn() : gmx::Grid
• paddedSize() : gmx::PaddedVector< T, Allocator >
• PaddedVector() : gmx::PaddedVector< T, Allocator >
• padding : gmx::BoundingBox::Corner
• pair : gmx::anonymous_namespace{domainpaircomm.cpp}::DistancesSquared , gmx::nbnxn_excl_t
• PairDistanceModuleData() : gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData
• pairlistCutoff : gmx::NbnxmKernelBenchOptions , gmx::test::anonymous_namespace{kernel_test.cpp}::KernelOptions
• pairlistInnerRadius() : gmx::nonbonded_verlet_t
• pairlistIsSimple() : gmx::nonbonded_verlet_t
• pairlistOuterRadius() : gmx::nonbonded_verlet_t
• PairlistParams() : gmx::PairlistParams
• pairlistSet() : gmx::PairlistSets
• PairlistSet() : gmx::PairlistSet
• pairlistSets() : gmx::nonbonded_verlet_t
• PairlistSets() : gmx::PairlistSets
• pairlistType : gmx::PairlistParams
• pairlistType_ : gmx::Grid::Geometry
• Pairs : ListedForces
• PairSearch() : gmx::PairSearch
• pairSearchCoordinates : anonymous_namespace{minimize.cpp}::EnergyEvaluator
• paragraphBreak() : gmx::HelpWriterContext
• ParallelConsistencyError() : gmx::ParallelConsistencyError
• parallelDataStarted() : gmx::AnalysisDataProxy , gmx::IAnalysisDataModule , gmx::AnalysisDataModuleParallel , gmx::AnalysisDataSimpleHistogramModule , gmx::AnalysisDataWeightedHistogramModule
• parallelizationFactor() : gmx::AnalysisDataParallelOptions
• parallelSelection() : gmx::TrajectoryAnalysisModuleData
• parallelSelections() : gmx::TrajectoryAnalysisModuleData
• param : gmx::SelectionTreeElement , gmx_ana_selmethod_t , gmx::ExponentialDistribution< RealType > , gmx::GammaDistribution< RealType > , gmx::NormalDistribution< RealType > , gmx::TabulatedNormalDistribution< RealType, tableBits > , gmx::UniformIntDistribution< IntType > , gmx::UniformRealDistribution< RealType >
• param_type() : gmx::GammaDistribution< RealType >::param_type , gmx::NormalDistribution< RealType >::param_type , gmx::TabulatedNormalDistribution< RealType, tableBits >::param_type , gmx::UniformIntDistribution< IntType >::param_type , gmx::UniformRealDistribution< RealType >::param_type , gmx::ExponentialDistribution< RealType >::param_type
• parameters : gmx::test::anonymous_namespace{virtualsites.cpp}::VirtualSiteTest::VirtualSite , gmx::QMMMOptions
• parameters_ : gmx::test::anonymous_namespace{pmegathertest.cpp}::GatherTestBody , gmx::test::anonymous_namespace{pmesolvetest.cpp}::SolveTestBody , gmx::test::anonymous_namespace{pmesplinespreadtest.cpp}::SplineAndSpreadTestBody
• parametersAllMasses1() : gmx::SettleData
• parametersMassWeighted() : gmx::SettleData
• Params() : gmx::nbnxn_atomdata_t::Params
• params() : gmx::Bias , gmx::nbnxn_atomdata_t , gmx::PairlistSets
• params_ : pull_group_work_t , pull_coord_work_t
• paramsDeprecated() : gmx::nbnxn_atomdata_t
• parent_ : gmx::internal::OptionSectionImpl::Group
• pargsToOptions() : gmx::anonymous_namespace{pargs.cpp}::OptionsAdapter
• ParrinelloRahmanBarostat() : gmx::ParrinelloRahmanBarostat
• parse() : gmx::CommandLineParser
• parseFromFile() : gmx::SelectionCollection
• parseFromStdin() : gmx::SelectionCollection
• parseFromString() : gmx::SelectionCollection
• parseInteractive() : gmx::SelectionCollection
• parseRequestedFromFile() : gmx::SelectionOptionManager
• parseRequestedFromStdin() : gmx::SelectionOptionManager
• parseRequestedFromString() : gmx::SelectionOptionManager
• partialCleanUp() : MoleculeInformation
• particleIndices : IndexGroup
• particleName() : SimulationParticle
• particleTypeNameA() : SimulationParticle
• particleTypeNameB() : SimulationParticle
• path_ : gmx::test::TestReferenceChecker::Impl , gmx::InstallationPrefixInfo
• pbc : gmx_sel_evaluate_t , t_swap , gmx::TrajectoryFrame
• Pbc : gmx::VirtualSitesHandler
• pbc_ : gmx::SelMethodEvalContext
• pbcAtomSet : pull_group_work_t
• pbcName : gmx::test::anonymous_namespace{settle.cpp}::SettleTestParameters
• pbcs_ : gmx::test::anonymous_namespace{settle.cpp}::SettleTest
• pbcType : PartialDeserializedTprFile , t_pbc , gmx::TopologyInformation
• pbcType_ : gmx::ColvarProxyGromacs , gmx::NNPotParameters , gmx::DomainInfo , gmx::GridSet::DomainSetup
• pbcTypeDX : t_pbc
• pc : gmx::SelectionTreeElement , t_methoddata_pos
• pcc : gmx_ana_selcollection_t , t_methoddata_pos
• pcrd : t_UmbrellaHeader
• PdbAtomEntry() : PdbAtomEntry
• pdihs : t_iparams
• peerRankId : gmx_pme_pp
• pendingLimit_ : gmx::internal::AnalysisDataStorageImpl
• perform3dFft() : gmx::Gpu3dFft , gmx::Gpu3dFft::ImplCuFft , gmx::Gpu3dFft::ImplCuFftMp , gmx::Gpu3dFft::ImplHipRocfft , gmx::Gpu3dFft::ImplHipVkFft , gmx::Gpu3dFft::Impl , gmx::Gpu3dFft::ImplOcl , gmx::Gpu3dFft::ImplOclVkfft , gmx::Gpu3dFft::ImplSycl , gmx::Gpu3dFft::ImplSyclBbfft , gmx::Gpu3dFft::ImplSyclMkl , gmx::Gpu3dFft::ImplSyclRocfft , gmx::Gpu3dFft::ImplSyclVkfft
• performGPUFFT : PmeGpuSettings
• performGPUGather : PmeGpuSettings
• performGPUSolve : PmeGpuSettings
• performOutOfPlaceFFT : PmeGpuSpecific
• performOutOfPlaceFFT_ : gmx::Gpu3dFft::Impl
• performPatternSearch() : gmx::analysismodules::anonymous_namespace{dssp.cpp}::SecondaryStructures
• performPreviouslySkippedUpdates() : gmx::PointState
• period : gmx::CheckpointOptions , gmx::GridAxis
• periodicBoundaryConditionType() : gmx::ColvarsSimulationsParameters , gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup , gmx::anonymous_namespace{qmmm.cpp}::QMMMSimulationParameterSetup
• perm : methoddata_permute
• permitSeparatePmeRanks() : gmx::SeparatePmeRanksPermitted
• pforce : gmx::LegacyMdrunOptions
• phi : t_bb
• PhysicalNodeCommunicator() : gmx::PhysicalNodeCommunicator
• pinningPolicy() : gmx::HostAllocationPolicy , gmx::ForceBuffers
• pipelineAtomEnd : PmeGpuKernelParamsBase
• pipelineAtomStart : PmeGpuKernelParamsBase
• pl_h2d : gmx::GpuTimers::Interaction
• pl_h2d_c : gmx_wallclock_gpu_nbnxn_t
• pl_h2d_t : gmx_wallclock_gpu_nbnxn_t
• placeSelectionsInRequests() : gmx::SelectionOptionManager::Impl
• plan : gmx_fft_fftw3 , gmx::RocfftPlan
• plans_ : gmx::Gpu3dFft::ImplHipRocfft::Impl , gmx::Gpu3dFft::ImplSyclRocfft::Impl
• plist : gmx::NbnxmGpu
• plotFormat() : gmx::AnalysisDataPlotSettings
• plotSettings : gmx::TrajectoryAnalysisSettings::Impl , gmx::TrajectoryAnalysisSettings
• plumedFilename_ : gmx::PlumedInputFilename
• PlumedForceProvider() : gmx::PlumedForceProvider
• PlumedMDModule() : gmx::anonymous_namespace{plumedMDModule.cpp}::PlumedMDModule , gmx::anonymous_namespace{plumedMDModule_stub.cpp}::PlumedMDModule
• pme_order : PmeShared
• pmeCoordinateReceiverGpu : gmx_pme_pp
• pmedata : pme_setup_t
• PmeForceSenderGpu() : gmx::PmeForceSenderGpu
• pmeForceSenderGpu : gmx_pme_pp
• pmeForcesReady : PmeGpuSpecific
• PmeGpuProgram() : PmeGpuProgram
• PmeGpuProgramImpl() : PmeGpuProgramImpl
• PmeGpuSpecific() : PmeGpuSpecific
• pmegridNk : PmeShared
• pmeGridsReadyForSpread : PmeGpuSpecific
• PmeKernelHandle : PmeGpuProgramImpl
• PmeLoadBalanceHelper() : gmx::PmeLoadBalanceHelper
• PmePpCommGpu() : gmx::PmePpCommGpu
• pmePrinting() : gmx::PmeLoadBalanceHelper
• pmeRanks_ : gmx::DomainDecompositionBuilder::Impl
• pmeRemoteCpuForcePtr : gmx::PpForceCommManager
• pmeRemoteGpuForcePtr : gmx::PpForceCommManager
• PmeSolve() : PmeSolve
• pmeStream_ : PmeGpuSpecific
• point() : gmx::BiasGrid
• pointer : gmx::ArrayRefWithPadding< typename > , gmx::accessor_basic< ElementType > , gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy > , gmx::internal::SimdArrayRef< T > , gmx::FixedCapacityVector< typename, size_t > , gmx::ArrayRef< typename > , gmx::EnumerationArray< EnumType, DataType, ArraySize >
• points() : gmx::BiasState
• pointsAdded() : gmx::AnalysisDataVectorPlotModule , gmx::AnalysisDataBinAverageModule , gmx::AnalysisDataFrameAverageModule , gmx::AnalysisDataProxy , gmx::internal::BasicAverageHistogramModule , gmx::analysismodules::anonymous_namespace{select.cpp}::IndexFileWriterModule , gmx::IAnalysisDataModule , gmx::AnalysisDataModuleSerial , gmx::AnalysisDataModuleParallel , gmx::AnalysisDataAverageModule , gmx::AnalysisDataDisplacementModule , gmx::AnalysisDataSimpleHistogramModule , gmx::AnalysisDataWeightedHistogramModule , gmx::AnalysisDataLifetimeModule , gmx::AbstractPlotModule , gmx::AnalysisDataPlotModule
• pointSet() : gmx::internal::AnalysisDataStorageFrameData , gmx::test::AnalysisDataTestInputFrame , gmx::AnalysisDataFrameRef
• pointSetCount() : gmx::internal::AnalysisDataStorageFrameData , gmx::test::AnalysisDataTestInputFrame , gmx::AnalysisDataFrameRef
• PointState() : gmx::PointState
• pop_back() : gmx::FixedCapacityVector< typename, size_t > , gmx::KeyValueTreePath
• pop_last() : gmx::KeyValueTreePath
• popIEntryWhenEmpty() : t_nblist
• port : gmx::ImdSession::Impl , gmx::ImdOptions
• pos : t_UmbrellaWindow , gmx::SelectionTreeElement
• posCount() : gmx::internal::SelectionData , gmx::Selection
• position() : gmx::Selection
• position_distance() : gmx::ColvarProxyGromacs
• PositionCalculationCollection() : gmx::PositionCalculationCollection
• positionOffset : gmx::MttkPropagatorConnectionDetails
• positionScalingCallback() : gmx::Propagator< integrationStage >
• positionsDatabase_ : gmx::test::anonymous_namespace{shake.cpp}::ShakeTest
• positionsView() : gmx::StatePropagatorData
• PositionSymbol : gmx::SelectionParserSymbol
• posres_xA : gmx_molblock_t
• posres_xB : gmx_molblock_t
• PotAngleFit : gmx_enfrotgrp
• potential() : gmx::AwhParams
• PotentialPointData() : gmx::PotentialPointData
• ppCommAtomRange() : gmx::PmeCoordinateReceiverGpu::Impl
• ppCommNumSenderRanks() : gmx::PmeCoordinateReceiverGpu::Impl
• ppCommStream() : gmx::PmeCoordinateReceiverGpu::Impl
• ppRank : gmx::PpCommManager
• ppRanks : gmx_pme_pp
• ppRanksInfo : PmeGpuKernelParamsBase
• ppRanksInfoSize : PmeGpuKernelParamsBase
• pprms2 : t_bb
• prec : gmx::OutputRequirements
• precision : gmx::OutputRequirements
• prepareAndTransformCoordinates() : gmx::ProcessFrameConversion
• prepareAndWriteFrame() : gmx::TrajectoryFrameWriter
• prepareAtomPositions() : gmx::TorchModel , gmx::INNPotModel
• prepareForPositionAssembly() : gmx::ImdSession::Impl
• prepareMainSocket() : gmx::ImdSession::Impl
• prepareMDForces() : gmx::ImdSession::Impl
• prepareMoleculesInImdGroup() : gmx::ImdSession::Impl
• prepareReferenceData() : gmx::test::PeriodicActionsTest
• prepareTest() : gmx::test::SetPrecisionSupportedFiles , gmx::test::SetAtomsSupportedFiles , gmx::test::AnyOutputSupportedFiles , gmx::test::NoOptionalOutput , gmx::test::OutputSelectorDeathTest , gmx::test::SetVelocitySupportedFiles , gmx::test::SetVelocityUnSupportedFiles , gmx::test::SetForceSupportedFiles , gmx::test::SetForceUnSupportedFiles , gmx::test::SetPrecisionUnSupportedFiles , gmx::test::SetAtomsUnSupportedFiles
• prepareVmdForces() : gmx::ImdSession::Impl
• prependContext() : gmx::anonymous_namespace{exceptions.cpp}::ErrorMessage , gmx::GromacsException
• preprocess() : gmx::NNPotTopologyPreprocessor , gmx::QMMMTopologyPreprocessor
• PreprocessingAtomTypes() : PreprocessingAtomTypes
• preProcessingNotifier_ : gmx::MDModulesNotifiers
• pres : gmx_repl_ex
• pres_prev : t_state
• present() : gmx::test::AnalysisDataTestInputPointSet , gmx::AnalysisDataFrameRef , gmx::AnalysisDataPointSetRef
• presentAllData() : gmx::test::AnalysisDataTestFixture
• presentData() : gmx::AnalysisDataModuleManager::Impl
• presentDataFrame() : gmx::test::AnalysisDataTestFixture
• pressure : DispersionCorrection::Correction , gmx::EnergyData
• pressure_ : gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest
• pressureCouplingScheme : gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTestParameters
• prev : gmx_ana_poscalc_t
• prev_pos_kw : gmx_sel_lexer_t
• previousBlockIndex() : gmx::CorrelationBlockData
• previousBox() : gmx::StatePropagatorData , PmeShared
• previousPositionsView() : gmx::StatePropagatorData
• prevResi_ : gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo
• printBinaryInformation : gmx::BinaryInformationSettings
• printCycles() : gmx::SearchCycleCounting
• printDebugInfo() : gmx::Selection
• printInfo() : gmx::Selection
• printInitializationToLog() : gmx::Bias
• printStringTableStorageToFile() : StringTable
• printThanks() : gmx::CommandLineModuleManager::Impl
• printTree() : gmx::PositionCalculationCollection , gmx::SelectionCollection
• printXvgrInfo() : gmx::SelectionCollection
• prob : gmx_repl_ex
• prob_sum : gmx_repl_ex
• process() : gmx::OutputRequirementOptionDirector
• processAll() : gmx::AbstractOptionStorage , gmx::OptionStorageTemplate< T >
• processAtomsRedistributedSignal() : gmx::ColvarsForceProvider
• processAwhFrame() : AwhReader
• processCommonOptions() : gmx::CommandLineModuleManager::Impl
• processCoordinates() : gmx::QMMMOptions , gmx::ColvarsOptions
• processEdrFilename() : gmx::ColvarsOptions
• processFrame() : gmx::IOutputAdapter , gmx::SetAtoms , gmx::SetForces , gmx::SetVelocities , gmx::SetBox , gmx::SetTimeStep , gmx::SetStartTime , gmx::OutputSelector , gmx::SetPrecision
• ProcessFrameConversion() : gmx::ProcessFrameConversion
• processId() : gmx::BinaryInformationSettings
• processingUnitRankInCore : gmx::HardwareTopology::LogicalProcessor
• processingUnits : gmx::HardwareTopology::Core , gmx::HardwareTopology::NumaNode
• processItem() : gmx::test::TestReferenceChecker::Impl
• processMarkup() : gmx::HelpWriterContext::Impl
• processSet() : gmx::OptionStorageTemplate< T > , gmx::AbstractOptionStorage
• processSetValues() : gmx::OptionStorageTemplate< T >
• processTemperature() : gmx::ColvarsOptions
• processTopology() : gmx::ColvarsOptions
• processTprFilename() : gmx::QMMMOptions
• processValue() : gmx::OptionStorageTemplateSimple< T >
• Profiling() : gmx::Profiling
• program : gmx_device_runtime_data_t
• programContext_ : gmx::CommandLineModuleManager::Impl
• programHandle_ : PmeGpu
• programName() : gmx::CommandLineProgramContext , gmx::anonymous_namespace{programcontext.cpp}::DefaultProgramContext , gmx::IProgramContext , gmx::test::anonymous_namespace{testinit.cpp}::TestProgramContext
• prop : AtomProperties::Impl , AtomProperties
• propagate_on_container_copy_assignment : gmx::HostAllocationPolicy
• propagate_on_container_move_assignment : gmx::HostAllocationPolicy
• propagate_on_container_swap : gmx::HostAllocationPolicy
• Propagator() : gmx::Propagator< integrationStage >
• propagatorCallback() : gmx::MttkData , gmx::MttkPropagatorConnection
• PropagatorTag() : gmx::PropagatorTag
• propagatorTagPostPosition : gmx::MttkPropagatorConnectionDetails
• propagatorTagPostVelocity1 : gmx::MttkPropagatorConnectionDetails
• propagatorTagPostVelocity2 : gmx::MttkPropagatorConnectionDetails
• propagatorTagPrePosition : gmx::MttkPropagatorConnectionDetails
• propagatorTagPreVelocity1 : gmx::MttkPropagatorConnectionDetails
• propagatorTagPreVelocity2 : gmx::MttkPropagatorConnectionDetails
• providesForces_ : gmx::NNPotParameters
• prScalingCallback() : gmx::Propagator< integrationStage >
• prune_k : gmx::GpuTimers::Interaction
• pruneTime : gmx_wallclock_gpu_nbnxn_t
• pselstr : gmx_sel_lexer_t
• psi : t_bb
• ptr() : gmx::BoundingBox::Corner , gmx_sel_mempool_block_t , gmx_ana_selvalue_t , gmx::BoundingBox::Corner
• ptype() : SimulationParticle , t_mdatoms
• puId : gmx::HardwareTopology::LogicalProcessor
• puIdInCore : gmx::CpuInfo::LogicalProcessor
• pull : gmx::ImdOptions
• pull_com_prev_step : t_state
• pull_coord_work_t() : pull_coord_work_t
• pull_group_work_t() : pull_group_work_t
• pull_type : t_pullcoord
• pull_work : anonymous_namespace{minimize.cpp}::EnergyEvaluator
• PullCoordExpressionParser() : gmx::PullCoordExpressionParser
• pullCoordIndex_ : gmx::BiasCoupledToSystem
• pullDimParams() : gmx::DimParams
• PullElement() : gmx::PullElement
• pullHistory : ObservablesHistory
• pullWork_ : gmx::LegacySimulatorData
• pupdate : gmx_ana_selmethod_t
• push_back() : InteractionList , gmx::FixedCapacityVector< typename, size_t > , gmx::PackedJClusterList , gmx::JClusterList , InteractionList
• pushBack() : gmx::ListOfLists< typename >
• pushBackListOfSize() : gmx::ListOfLists< typename >
• putAtomOffsetInReceiverRankXBuf_ : gmx::nvshmemHaloExchangeOps
• putAtomsOnGrid() : gmx::nonbonded_verlet_t
• putOnGrid() : gmx::GridSet , gmx::PairSearch