Here is a list of all documented class members with links to the class documentation for each member:
- r -
- r
: t_pargs
, gmx::SelectionParserValue
, t_compare_value
, t_methoddata_kwint
, gmx_ana_selvalue_t
, t_methoddata_kwreal
- r1
: gmx::SelectionParserValue
- r2
: gmx::SelectionParserValue
- radacc
: anonymous_namespace{edsam.cpp}::t_edvecs
- radcon
: anonymous_namespace{edsam.cpp}::t_edvecs
- radfix
: anonymous_namespace{edsam.cpp}::t_edvecs
- radius
: anonymous_namespace{edsam.cpp}::t_eigvec
- rand_gaussian()
: gmx::ColvarProxyGromacs
- randomSeed
: ReplicaExchangeParameters
- Range()
: gmx::Range< typename >
- range()
: gmx::AnalysisHistogramSettingsInitializer
- Range()
: gmx::Range< typename >
- rangeEnd
: gmx::VsiteThread
- RangeError()
: gmx::RangeError
- rangeStart
: gmx::VsiteThread
- rank()
: gmx::DomainCommBackward
, gmx::DomainCommForward
, gmx::detail::extents_analyse< R, E0, StaticExtents...>
, gmx::detail::extents_analyse< R, dynamic_extent, StaticExtents...>
, gmx::detail::extents_analyse< 0 >
, gmx::extents< StaticExtents >
, gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
- rank_
: gmx::PhysicalNodeCommunicator
, gmx::test::MultiSimTest
- rank_dynamic()
: gmx::detail::extents_analyse< 0 >
, gmx::extents< StaticExtents >
, gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
, gmx::detail::extents_analyse< R, E0, StaticExtents...>
, gmx::detail::extents_analyse< R, dynamic_extent, StaticExtents...>
- rankData_
: gmx::test::anonymous_namespace{observablesreducer.cpp}::ObservablesReducerIntegrationTest
- rankId
: PpRanks
, PpRanksSendFInfo
- rankOrder
: gmx::DomdecOptions
- ranksX
: PmeGpuHaloExchange
- ranksY
: PmeGpuHaloExchange
- RawArray
: gmx::BasicVector< ValueType >
- rb
: PreprocessResidue
, MoleculePatchDatabase
- rbegin()
: gmx::FixedCapacityVector< typename, size_t >
, gmx::ArrayRef< typename >
, gmx::EnumerationArray< EnumType, DataType, ArraySize >
- rcoulomb_sq
: gmx::NBParamGpu
, gmx::cl_nbparam_params
- rcut_coulomb
: pme_setup_t
- RdfModuleData()
: gmx::analysismodules::anonymous_namespace{rdf.cpp}::RdfModuleData
- readAll()
: gmx::TextReader
- readCheckpoint()
: gmx::ITemperatureCouplingImpl
, gmx::VRescaleTemperatureCoupling
, gmx::BerendsenTemperatureCoupling
, gmx::NoseHooverTemperatureCoupling
- readCheckpointToTrxFrame()
: gmx::FreeEnergyPerturbationData
, gmx::ModularSimulator
, gmx::StatePropagatorData
- readCommand()
: gmx::ImdSession::Impl
- readDouble()
: gmx::test::TestReferenceChecker
- readFileToString()
: gmx::TextReader
- readFloat()
: gmx::test::TestReferenceChecker
- reading()
: gmx::FileIOXdrSerializer
, gmx::ISerializer
- readInt32()
: gmx::test::TestReferenceChecker
- readInt64()
: gmx::test::TestReferenceChecker
- readInteger()
: gmx::test::TestReferenceChecker
- readInternalParametersFromKvt()
: gmx::ColvarsOptions
, gmx::DensityFittingOptions
, gmx::QMMMOptions
- readLine()
: gmx::StandardInputStream
, gmx::TextInputFile
, gmx::StringInputStream
, gmx::TextReader
, gmx::TextInputStream
- readNextFrame()
: gmx::TrajectoryAnalysisRunnerCommon
, gmx::test::EnergyFrameReader
, gmx::test::TrajectoryFrameReader
- readReferenceDensityFromFile()
: gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup
- readState()
: gmx::ColvarsForceProviderState
, gmx::DensityFittingForceProviderState
- readString()
: gmx::test::TestReferenceChecker
- readStringTableEntry
: StringTableEntry
- readUChar()
: gmx::test::TestReferenceChecker
- readVmdForces()
: gmx::ImdSession::Impl
- readWriteFlags()
: gmx::FileNameOption
- ready
: gmx::PpCommManager
- real_fft
: gmx_fft_mkl
- real_transform
: gmx_fft_fftw3
- realddxyz
: gmx::LegacyMdrunOptions
- realGrid_
: gmx::Gpu3dFft::ImplHipRocfft::Impl
, gmx::Gpu3dFft::ImplSyclRocfft::Impl
- realGridCapacity
: PmeGpuSpecific
- realGridSize
: PmeGpuGridParams
, PmeGpuSpecific
, SolveKernelParams
- realGridSizeFP
: PmeGpuGridParams
- realGridSizePadded
: PmeGpuGridParams
- RealType
: ScalarDataTypes
- reasonsWhyDisabled()
: gmx::SeparatePmeRanksPermitted
- recalculateSplines
: PmeGpuSettings
- receive
: gmx::HaloMpiRequests
- receiveCoordinatesSynchronizerFromPpPeerToPeer()
: gmx::PmeCoordinateReceiverGpu::Impl
- receiveForceFromPme()
: gmx::PmePpCommGpu
, gmx::PmePpCommGpu::Impl
- receivePpCoordinateSendEvent()
: gmx::PmeCoordinateReceiverGpu::Impl
- recipBox
: PmeGpuDynamicParams
, SolveKernelParams
- recordCycles_
: gmx::SearchCycleCounting
- redirector_
: gmx::FileNameOptionManager::Impl
- redirectStringToStdin()
: gmx::test::StdioTestHelper
- reduce()
: gmx::ThreadedForceBuffer< ForceBufferElementType >
- reduceEnergiesAndDvdl()
: gmx::ThreadedForceBuffer< ForceBufferElementType >
- reduceForces()
: gmx::nbnxn_atomdata_t
- reduceIEnergies()
: gmx::EnergyAccumulator< useEnergyGroups, false >
, gmx::EnergyAccumulator< true, true >
- reduceSoon_
: gmx::ObservablesReducer::Impl
- reduceTask
: gmx::InterdependentTask
- reductionBuffer_
: gmx::LocalTopologyChecker::Impl
, ExclusionChecker::Impl
- reductionComplete()
: gmx::ObservablesReducer
- reductionMask()
: gmx::ThreadForceBuffer< ForceBufferElementType >
- ref
: gmx_slabdata
- refcount
: gmx_ana_poscalc_t
, t_compiler_data
- refCountArray_
: gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData
- refData_
: gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest
, gmx::test::anonymous_namespace{langevin.cpp}::LangevinTest
, gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTest
, gmx::test::anonymous_namespace{settle.cpp}::SettleTest
- RefDataFilenameMaker()
: gmx::test::RefDataFilenameMaker< ParametersTuple >
- reference
: gmx::MultiDimArray< TContainer, Extents, LayoutPolicy >
, gmx::accessor_basic< ElementType >
, gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
, gmx::internal::SimdArrayRef< T >
, gmx::FixedCapacityVector< typename, size_t >
, gmx::ArrayRef< typename >
- referenceCoordinates()
: t_oriresdata
- referenceDensity()
: gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup
- referenceDensityFileName()
: gmx::DensityFittingOptions
- referenceFileNames_
: gmx::test::PeriodicActionsTest
- referencePositions
: gmx_enfrotgrp
- referencePressure()
: gmx::MttkData
- referenceProjectionSlope
: anonymous_namespace{edsam.cpp}::t_edflood
- referenceSquaredSum
: gmx::anonymous_namespace{densityfit.cpp}::CrossCorrelationEvaluationHelperValues
- referenceTemperature
: gmx::TemperatureCouplingData
- ReferenceTemperatureHelper()
: gmx::StatePropagatorData::ReferenceTemperatureHelper
- ReferenceTemperatureManager()
: gmx::ReferenceTemperatureManager
- referenceVolumeShift()
: gmx::TestParticleInsertion
- refid
: gmx_ana_indexmap_t
- refId()
: gmx::SelectionPosition
- refIds()
: gmx::Selection
- refIndex()
: gmx::AnalysisNeighborhoodPair
- refproj
: anonymous_namespace{edsam.cpp}::t_eigvec
- refreshMassesAndCharges()
: gmx::internal::SelectionData
- refreshName()
: gmx::internal::SelectionData
- registerAnalysisDataset()
: gmx::TrajectoryAnalysisModule
- registerAwhWithPull()
: gmx::Awh
- registerBasicDataset()
: gmx::TrajectoryAnalysisModule
- registerClient()
: gmx::CheckpointHelperBuilder
, gmx::DomDecHelperBuilder
, gmx::TopologyHolder::Builder
- registerDomDecCallback()
: gmx::ForceElement
, gmx::FreeEnergyPerturbationData::Element
, gmx::IDomDecHelperClient
, gmx::TopologyHolder
- registeredCallbacks_
: gmx::ObservablesReducer::Impl
- registerEnergyCallback()
: gmx::IEnergySignallerClient
- registerLastStepCallback()
: gmx::ILastStepSignallerClient
- registerLoggingCallback()
: gmx::ILoggingSignallerClient
- registerModule()
: gmx::CommandLineModuleManager
, gmx::TrajectoryAnalysisCommandLineRunner
- registerModuleDirect()
: gmx::ICommandLineOptionsModule
- registerModuleFactory()
: gmx::ICommandLineOptionsModule
- registerNbnxmForce()
: gmx::GpuForceReduction
- registerNSCallback()
: gmx::INeighborSearchSignallerClient
- registerOption()
: gmx::SelectionOptionManager
- registerPostStepScheduling()
: gmx::ModularSimulatorAlgorithmBuilderHelper
- registerPreStepScheduling()
: gmx::ModularSimulatorAlgorithmBuilderHelper
- registerPropagator()
: gmx::ModularSimulatorAlgorithmBuilderHelper
- registerReferenceTemperatureUpdate()
: gmx::ModularSimulatorAlgorithmBuilderHelper
- registerRvecForce()
: gmx::GpuForceReduction
- registerSignallerClient()
: gmx::SignallerBuilder< Signaller >
- registerStopCondition()
: gmx::StopHandlerBuilder
- registerSubTopic()
: gmx::AbstractCompositeHelpTopic
- registerTemperaturePressureControl()
: gmx::ModularSimulatorAlgorithmBuilderHelper
- registerTrajectorySignallerCallback()
: gmx::ITrajectorySignallerClient
- registerTrajectoryWriterCallback()
: gmx::ITrajectoryWriterClient
- registerUpdateCallback()
: gmx::ReferenceTemperatureManager
- registerWriterClient()
: gmx::TrajectoryElementBuilder
- reinit()
: gmx::PmePpCommGpu
, gmx::PmePpCommGpu::Impl
, gmx::GpuForceReduction
- reinitCoordinateReceiver()
: gmx::PmeCoordinateReceiverGpu::Impl
- reinitHalo()
: gmx::GpuHaloExchange
, gmx::GpuHaloExchange::Impl
- reinitNvshmemSignal()
: gmx::GpuHaloExchange
, gmx::GpuHaloExchange::Impl
- relativeLatency
: gmx::HardwareTopology::Numa
- relativeToleranceAsFloatingPoint()
: gmx::test::FloatingPointTolerance
- relativeToleranceAsPrecisionDependentFloatingPoint()
: gmx::test::FloatingPointTolerance
- relativeToleranceAsPrecisionDependentUlp()
: gmx::test::FloatingPointTolerance
- relativeToleranceAsUlp()
: gmx::test::FloatingPointTolerance
- releaser
: gmx::OpenClTraits< cl_context >
, gmx::OpenClTraits< cl_command_queue >
, gmx::OpenClTraits< cl_program >
, gmx::OpenClTraits< cl_kernel >
- ReleaserType
: gmx::OpenClTraitsBase< cl_type >
- remainingMMCharge
: gmx::QMMMTopologyInfo
- removeCalculation()
: gmx::PositionCalculationCollection::Impl
- removeFiles()
: gmx::test::TestFileManager::Impl
- removeMolecularShifts()
: gmx::ImdSession::Impl
- removeQMClassicalCharges()
: gmx::QMMMTopologyPreprocessor
- removeTerminatingLineFeed()
: gmx::anonymous_namespace{exceptions.cpp}::MessageWriterString
- rend()
: gmx::FixedCapacityVector< typename, size_t >
, gmx::ArrayRef< typename >
- renumberTypes()
: PreprocessingAtomTypes
- reopenRegionCpu()
: DDBalanceRegionHandler
- RepeatingOptionSection()
: gmx::RepeatingOptionSection< T >
- RepeatingOptionSectionHandle()
: gmx::RepeatingOptionSectionHandle< T >
- RepeatingOptionSectionHandle< T >
: gmx::RepeatingOptionSectionStorage< T >
- RepeatingOptionSectionStorage()
: gmx::RepeatingOptionSectionStorage< T >
- RepeatingOptionSectionStorage< T >
: gmx::RepeatingOptionSection< T >
- repl
: gmx_repl_ex
- replaceLinks()
: gmx::HelpWriterContext::Impl
- ReplaceList
: gmx::HelpWriterContext::Impl
- replacements_
: gmx::HelpWriterContext::Impl
- replExParams
: gmx::LegacyMdrunOptions
- replExParams_
: gmx::LegacySimulatorData
- reportGpuUsage()
: gmx::GpuTaskAssignments
- reportTime
: gmx::NbnxmKernelBenchOptions
- reppow
: gmx_ffparams_t
- representativeItem()
: gmx::UnionFinder
- representativeValue()
: gmx::MappedUnionFinder
- reproducible
: gmx::MdrunOptions
- repulsion_shift
: gmx::NBParamGpu
, gmx::cl_nbparam_params
- req
: gmx_pme_pp
- requestFrame()
: gmx::test::TopologyManager
- RequestList
: gmx::SelectionOptionManager::Impl
- requestOptionDelayedParsing()
: gmx::SelectionOptionManager
- requests_
: gmx::SelectionOptionManager::Impl
- RequestsClearer()
: gmx::SelectionOptionManager::Impl::RequestsClearer
- requestStorage()
: gmx::AnalysisDataStorage
, gmx::AbstractAnalysisData
- requestStorageInternal()
: gmx::AbstractAnalysisData
- requestUnsetRequiredOptions()
: gmx::SelectionOptionManager::Impl
- required()
: gmx::OptionTemplate< T, U >
- required_span_size()
: gmx::layout_right::mapping< Extents >
- requiredAtoms_
: gmx::SelectionCollection::Impl
- RequiredTopologyInfo
: gmx::PositionCalculationCollection
- requiredTopologyInfoForType()
: gmx::PositionCalculationCollection
- requiredTopologyProperties()
: gmx::SelectionTreeElement
, gmx::SelectionCollection
- requiredTopologyPropertiesForPositionType()
: gmx::SelectionCollection::Impl
- requirementsBuilder_
: gmx::test::FlagTest
- requirePbcHandling
: gmx::test::TrajectoryFrameMatchSettings
- requireReduction()
: gmx::ObservablesReducer::Impl
- requiresIndexGroups()
: gmx::SelectionCollection
, gmx::SelectionTreeElement
- rerun
: gmx::MdrunOptions
- rerunConstructVsites
: gmx::MdrunOptions
- res_a_
: gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData
- resampleDoubleBinWidth()
: gmx::AbstractAverageHistogram
- reserve()
: gmx::OptionValueStoreNull< T >
, anonymous_namespace{evaluate.cpp}::MempoolSelelemReserver
, gmx::internal::EnumIndexStore< EnumType >
, gmx::IOptionValueStore< T >
, anonymous_namespace{evaluate.cpp}::MempoolGroupReserver
- ReservedSymbol
: gmx::SelectionParserSymbol
- reserveWithPadding()
: gmx::PaddedVector< T, Allocator >
- reset()
: GpuRegionTimerWrapper< GpuRegionTimerImpl >
, GpuRegionTimerImpl
, gmx::MdGpuGraph::Impl
, gmx::GammaDistribution< RealType >
, gmx::NormalDistribution< RealType >
, gmx::TabulatedNormalDistribution< RealType, tableBits >
, gmx::UniformRealDistribution< RealType >
, gmx::AnalysisNeighborhoodSearch
, gmx::ExponentialDistribution< RealType >
, gmx::UniformIntDistribution< IntType >
- reset_time_stamp
: gmx_walltime_accounting
- reset_time_stamp_per_thread
: gmx_walltime_accounting
- resetCounters()
: gmx::ResetHandler
- resetHalfway
: gmx::TimingOptions
- ResetHandler()
: gmx::ResetHandler
- resetStep
: gmx::TimingOptions
- residueName
: BaseEntry
, AtomProxy
- residueNumber()
: AtomProxy
- residueNumberStart
: MoleculeBlockIndices
- residueTypeMap
: AtomProperties::Impl
- resind()
: SimulationParticle
- resize()
: gmx::MultiDimArray< TContainer, Extents, LayoutPolicy >
, ForceHelperBuffers
, gmx::JClusterList
, gmx::PackedJClusterList
, gmx::FixedCapacityVector< typename, size_t >
, gmx::ForceBuffers
- resizeBoundingBoxesAndFlags()
: gmx::Grid
- resizeBufferAndClearMask()
: gmx::ThreadForceBuffer< ForceBufferElementType >
- resizeChargeA()
: gmx::MDAtoms
- resizeChargeB()
: gmx::MDAtoms
- resizeCoordinateBuffer()
: gmx::nbnxn_atomdata_t
- resizeEnergyGroups()
: gmx::EnergyGroupsPerCluster
- resizeForceBuffers()
: gmx::nbnxn_atomdata_t
- resizeWithPadding()
: gmx::PaddedVector< T, Allocator >
- resname
: VirtualSiteTopology
, PreprocessResidue
- resno
: t_bb
- resolveExternalGroups()
: gmx::SelectionCollection::Impl
- resolveIndexGroupReference()
: gmx::SelectionTreeElement
- Rest
: ListedForces
- restart()
: gmx::ThreeFry2x64General< rounds, internalCounterBits >
- restartWithAppending
: gmx_enfrot
- restoreCheckpointState()
: gmx::ParrinelloRahmanBarostat
, gmx::StatePropagatorData::Element
, gmx::MttkData
, gmx::NoseHooverChainsData
, gmx::EnergyData::Element
, gmx::ExpandedEnsembleElement
, gmx::FirstOrderPressureCoupling
, gmx::ICheckpointHelperClient
, gmx::PullElement
, gmx::VelocityScalingTemperatureCoupling
, gmx::FreeEnergyPerturbationData::Element
- restoreFromHistory()
: gmx::CorrelationTensor
, gmx::CorrelationBlockData
, gmx::CoordState
, gmx::HistogramSize
, gmx::BiasState
- restoreOriginalPositions()
: gmx::internal::SelectionData
- restoreStateFromHistory()
: gmx::Bias
, gmx::Awh
, gmx::CorrelationGrid
- restraint_
: gmx::RestraintManager::Impl
- RestraintForceProvider()
: gmx::RestraintForceProvider
- RestraintManager()
: gmx::RestraintManager
- RestraintMDModule()
: gmx::RestraintMDModule
- RestraintMDModuleImpl()
: gmx::RestraintMDModuleImpl
- result()
: gmx::anonymous_namespace{helpwritercontext.cpp}::WrapperToString
, gmx::anonymous_namespace{exceptions.cpp}::MessageWriterString
, gmx::anonymous_namespace{helpwritercontext.cpp}::WrapperToVector
- result_type
: gmx::GammaDistribution< RealType >
, gmx::NormalDistribution< RealType >
, gmx::TabulatedNormalDistribution< RealType, tableBits >
, gmx::UniformIntDistribution< IntType >
, gmx::ExponentialDistribution< RealType >
, gmx::UniformRealDistribution< RealType >
, gmx::ThreeFry2x64General< rounds, internalCounterBits >
- reverse_iterator
: gmx::internal::SimdArrayRef< T >
, gmx::ArrayRef< typename >
, gmx::FixedCapacityVector< typename, size_t >
- reverseBoolean_
: gmx::OptionsAssigner::Impl
- ReverseTopOptions()
: ReverseTopOptions
- rgb
: t_mapping
- rho_
: gmx::anonymous_namespace{neldermead.cpp}::NelderMeadParameters
- right
: t_methoddata_compare
- rij
: gmx::shakedata
- RiscV32
: gmx::CpuInfo
- RiscV64
: gmx::CpuInfo
- rlist
: gmx::NbnxnPairlistCpu
- rlistInner
: pme_setup_t
, gmx::PairlistParams
- rlistInner_sq
: gmx::cl_nbparam_params
, gmx::NBParamGpu
- rlistOuter
: pme_setup_t
, gmx::PairlistParams
- rlistOuter_sq
: gmx::NBParamGpu
, gmx::cl_nbparam_params
- rms_
: gmx::MrcDataStatistics
- rmsa
: t_bb
- rmsd()
: gmx::Constraints
- rmsdev
: t_oriresdata
- rmsdReductionBuffer
: gmx::Lincs
- rng
: UmbrellaOptions
- rollingPrune_k
: gmx::GpuTimers::Interaction
- rollingPruningNumParts
: gmx::GpuPairlist
- rollingPruningPart
: gmx::GpuPairlist
- root
: gmx_ana_selcollection_t
- rootChecker()
: gmx::test::TestReferenceData
, gmx::test::CommandLineTestBase
- rootChecker_
: gmx::test::MockAnalysisDataModule::Impl
- rootContext_
: gmx::HelpManager::Impl
- rootElement()
: gmx::internal::SelectionData
- rootGroup_
: gmx::internal::OptionSectionImpl
- rootHelp
: gmx_ana_selcollection_t
- RootHelpTopic()
: gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::RootHelpTopic
- rootObject()
: gmx::KeyValueTreeBuilder
- rootSection()
: gmx::Options
- rootSection_
: gmx::internal::OptionsImpl
- rot
: gmx_enfrot
- rotateBuffer()
: gmx::internal::AnalysisDataStorageImpl
- rotationMatrix
: t_oriresdata
- rotg
: gmx_enfrotgrp
- rotmat
: gmx_potfit
, gmx_enfrotgrp
- roundRange()
: gmx::AnalysisHistogramSettingsInitializer
- rowCount()
: gmx::AbstractAnalysisArrayData
- rperm
: methoddata_permute
- rpost_
: gmx::SelectionCollection::Impl
- RstParagraphIterator()
: gmx::RstParagraphIterator
- rules()
: gmx::KeyValueTreeTransformRulesScoped
- run()
: anonymous_namespace{legacymodules.cpp}::ObsoleteToolModule
, gmx::ModularSimulator
, gmx::ISimulator
, gmx::CommandLineModuleManager
, gmx::DomDecHelper
, gmx::PmeLoadBalanceHelper
, gmx::CheckpointHelper
, gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule
, gmx::ICommandLineOptionsModule
, anonymous_namespace{minimize.cpp}::EnergyEvaluator
, gmx::CommandLineHelpModule
, gmx::ICommandLineModule
, gmx::LegacySimulator
, gmx::ImdSession::Impl
- runAsMain()
: gmx::TrajectoryAnalysisCommandLineRunner
, gmx::ICommandLineOptionsModule
- runAsMainCMain()
: gmx::CommandLineModuleManager
- runAsMainCMainWithSettings()
: gmx::CommandLineModuleManager
- runAsMainSingleModule()
: gmx::CommandLineModuleManager
- runExitsNormallyTest()
: gmx::test::MultiSimTest
- runFirstMdrun()
: gmx::test::TerminationHelper
- runGrompp()
: gmx::test::MultiSimTest
- runMaxhTest()
: gmx::test::MultiSimTest
- runMode
: PmeShared
- runModuleDirect()
: gmx::test::CommandLineTestHelper
- runModuleFactory()
: gmx::test::CommandLineTestHelper
- runner_
: gmx::test::TerminationHelper
, gmx::test::MdrunTestFixture
- runScheduleWork
: anonymous_namespace{minimize.cpp}::EnergyEvaluator
- runScheduleWork_
: gmx::LegacySimulatorData
, gmx::SimulatorConfig
- runSecondMdrun()
: gmx::test::TerminationHelper
- runSecondMdrunWithNoAppend()
: gmx::test::TerminationHelper
- runTest()
: anonymous_namespace{grompp.cpp}::GromppTest
, gmx::test::anonymous_namespace{shake.cpp}::ShakeTest
, gmx::test::AbstractTrajectoryAnalysisModuleTestFixture
, gmx::test::anonymous_namespace{tpitest.cpp}::TpiTest
, gmx::test::ModuleTest
, gmx::test::anonymous_namespace{pmebsplinetest.cpp}::PmeBSplineModuliTest
- runTestAnticipatingException()
: gmx::test::AbstractTrajectoryAnalysisModuleTestFixture
- runTestMolecule()
: gmx::test::anonymous_namespace{com.cpp}::COMInPlaceTest
- runTestResidue()
: gmx::test::anonymous_namespace{com.cpp}::COMInPlaceTest
- rv
: t_pargs
- rvdw_sq
: gmx::NBParamGpu
, gmx::cl_nbparam_params
- rvdw_switch
: gmx::cl_nbparam_params
, gmx::NBParamGpu
- rvec_array()
: gmx::PaddedVector< T, Allocator >
- rvecBuffer
: AtomDistribution
, gmx::DomainCommBackward
- RVecMatcher()
: gmx::test::RVecMatcher< FloatType >