- a -

• a : gmx_specatsend_t , BondedInteraction , gmx::CromerMannParameters , MoleculePatch
• a_fmax : em_state
• aa : gmx::analysismodules::anonymous_namespace{sasa.cpp}::t_conect
• ab : gmx::analysismodules::anonymous_namespace{sasa.cpp}::t_conect
• absTol_ : gmx::test::SimdBaseTest
• acceptor_ : gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo
• acceptorEnergy_ : gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo
• accum_m : df_history_t
• accum_m2 : df_history_t
• accum_p : df_history_t
• accum_p2 : df_history_t
• accumulator_ : gmx::AnalysisDataWeightedHistogramModule::Impl , gmx::AnalysisDataSimpleHistogramModule::Impl
• accumulatorGroupEnergies : gmx::nbnxn_atomdata_output_t
• accumulatorSingleEnergies : gmx::nbnxn_atomdata_output_t
• active_ : gmx::DensityFittingParameters , gmx::NNPotParameters , gmx::QMMMParameters
• activeTimers : PmeGpuSpecific
• acTrestart : UmbrellaOptions
• adaptiveForceConstantScale_ : gmx::DensityFittingForceProviderState
• adaptiveForceConstantScaleName_ : gmx::DensityFittingForceProviderState
• adaptiveForceScaling_ : gmx::DensityFittingParameters
• adaptiveForceScalingTimeConstant_ : gmx::DensityFittingParameters
• allswaps : gmx_repl_ex
• alpha2 : anonymous_namespace{edsam.cpp}::t_edflood
• alpha_ : gmx::anonymous_namespace{neldermead.cpp}::NelderMeadParameters
• amplitude_ : gmx::GaussianSpreadKernelParameters::PositionAndAmplitude
• amplitudeLookupMethod_ : gmx::DensityFittingParameters
• analysisDatasets_ : gmx::TrajectoryAnalysisModule::Impl
• angcut : methoddata_insolidangle
• angle : VirtualSiteTopology
• angle_v : gmx_enfrotgrp
• angles : AllVsiteBondedInteractions
• apicId : gmx::anonymous_namespace{cpuinfo.cpp}::ApicInfo
• apm : swap_group
• appendingBehavior : gmx::MdrunOptions
• appendOption : gmx::LegacyMdrunOptions
• archSpecific : PmeGpu
• arrayType : gmx::PlanSetupData
• arriveWaitBarrierVal_ : gmx::nvshmemHaloExchangeOps
• as : t_methoddata_same
• as_s_sorted : t_methoddata_same
• assigner_ : gmx::CommandLineParser::Impl
• associativity : gmx::HardwareTopology::Cache
• at_end : gmx_domdec_specat_comm_t
• at_start : gmx_domdec_specat_comm_t
• atdat : gmx::NbnxmGpu , gmx::GpuTimers
• atf : gmx::Lincs
• atnr : gmx_ffparams_t , t_idef
• atom : t_nblist::IEntry , PreprocessResidue , MoleculePatch , gmx::AtomIndex , t_nblist::JEntry
• atom1 : VirtualSiteTopology::VirtualSiteBond , VirtualSiteTopology::VirtualSiteAngle
• atom2 : VirtualSiteTopology::VirtualSiteAngle , VirtualSiteTopology::VirtualSiteBond
• atom3 : VirtualSiteTopology::VirtualSiteAngle
• atomAreas_ : gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData
• atomCount : gmx::analysismodules::anonymous_namespace{msd.cpp}::MoleculeData
• atomDensity : gmx::GridDimensions
• atomGroups : AtomDistribution::DomainAtomGroups , AtomDistribution
• atomI : gmx::PairDistValue
• atomicNumber : gmx::AtomicStructureFactor
• atomIdx : gmx::test::anonymous_namespace{virtualsites.cpp}::VirtualSiteTest::VirtualSite
• atomIndex : MolecularTopologyAtomIndices , gmx::InterdependentTask
• atomIndexInMolecule : AtomInMolblock
• atomIndices : gmx::NbnxmGpu , gmx::GridSetData
• atomIndicesSize : gmx::NbnxmGpu
• atomIndicesSize_alloc : gmx::NbnxmGpu
• atomInfo : gmx::AtomInfoWithinMoleculeBlock , gmx::test::TestSystem
• atomInfoAllVdw : gmx::BenchmarkSystem
• atomInfoOxygenVdw : gmx::BenchmarkSystem
• atomJ : gmx::PairDistValue
• atomname : PreprocessResidue
• atomName : BaseEntry
• atomNumber : gmx::ExclusionBlock
• atomNumbers_ : gmx::QMMMParameters
• atomRange : gmx::PpCommManager
• atoms : gmx::test::anonymous_namespace{nb_free_energy.cpp}::ListInput , gmx::OutputRequirements , MoleculeInformation , gmx_moltype_t , gmx::Lincs , PmeGpuKernelParamsBase
• atoms_ : gmx::NNPotParameters
• atomSet : gmx_enfrotgrp , swap_group
• atomSet_ : pull_group_work_t
• atomSetData_ : gmx::LocalAtomSetManager::Impl
• atomtype : VirtualSiteConfiguration
• atomTypes : gmx::NBAtomDataGpu , gmx::test::TestSystem , gmx::BenchmarkSystem
• aver : t_UmbrellaWindow
• averager_ : gmx::internal::BasicHistogramImpl
• awhHistory : t_state
• awhParams : gmx::test::AwhTestParameters
• axis_x : t_matrix
• axis_y : t_matrix