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- a -
a :
gmx_specatsend_t
,
BondedInteraction
,
gmx::CromerMannParameters
,
MoleculePatch
a_fmax :
em_state
aa :
gmx::analysismodules::anonymous_namespace{sasa.cpp}::t_conect
ab :
gmx::analysismodules::anonymous_namespace{sasa.cpp}::t_conect
absTol_ :
gmx::test::SimdBaseTest
acceptor_ :
gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo
acceptorEnergy_ :
gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo
accum_m :
df_history_t
accum_m2 :
df_history_t
accum_p :
df_history_t
accum_p2 :
df_history_t
accumulator_ :
gmx::AnalysisDataWeightedHistogramModule::Impl
,
gmx::AnalysisDataSimpleHistogramModule::Impl
accumulatorGroupEnergies :
nbnxn_atomdata_output_t
accumulatorSingleEnergies :
nbnxn_atomdata_output_t
active_ :
gmx::DensityFittingParameters
,
gmx::QMMMParameters
activeTimers :
PmeGpuSpecific
acTrestart :
UmbrellaOptions
adaptiveForceConstantScale_ :
gmx::DensityFittingForceProviderState
adaptiveForceConstantScaleName_ :
gmx::DensityFittingForceProviderState
adaptiveForceScaling_ :
gmx::DensityFittingParameters
adaptiveForceScalingTimeConstant_ :
gmx::DensityFittingParameters
allswaps :
gmx_repl_ex
alpha2 :
anonymous_namespace{edsam.cpp}::t_edflood
alpha_ :
gmx::anonymous_namespace{neldermead.cpp}::NelderMeadParameters
amplitude_ :
gmx::GaussianSpreadKernelParameters::PositionAndAmplitude
amplitudeLookupMethod_ :
gmx::DensityFittingParameters
analysisDatasets_ :
gmx::TrajectoryAnalysisModule::Impl
angcut :
methoddata_insolidangle
angle :
VirtualSiteTopology
angle_v :
gmx_enfrotgrp
angles :
AllVsiteBondedInteractions
apicId :
gmx::anonymous_namespace{cpuinfo.cpp}::ApicInfo
apm :
swap_group
appendingBehavior :
gmx::MdrunOptions
appendOption :
gmx::LegacyMdrunOptions
archSpecific :
PmeGpu
arrayType :
gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}::PlanSetupData
as :
t_methoddata_same
as_s_sorted :
t_methoddata_same
assigner_ :
gmx::CommandLineParser::Impl
associativity :
gmx::HardwareTopology::Cache
at_end :
gmx_domdec_specat_comm_t
at_start :
gmx_domdec_specat_comm_t
atdat :
NbnxmGpu
,
Nbnxm::GpuTimers
atf :
gmx::Lincs
atnr :
gmx_ffparams_t
,
t_idef
atom :
PreprocessResidue
,
MoleculePatch
,
gmx::AtomIndex
atom1 :
VirtualSiteTopology::VirtualSiteBond
,
VirtualSiteTopology::VirtualSiteAngle
atom2 :
VirtualSiteTopology::VirtualSiteBond
,
VirtualSiteTopology::VirtualSiteAngle
atom3 :
VirtualSiteTopology::VirtualSiteAngle
atomAreas_ :
gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData
atomCount :
gmx::analysismodules::anonymous_namespace{msd.cpp}::MoleculeData
atomDensity :
Nbnxm::Grid::Dimensions
atomGroups :
AtomDistribution::DomainAtomGroups
,
AtomDistribution
atomI :
gmx::PairDistValue
atomicNumber :
gmx::AtomicStructureFactor
atomIdx :
gmx::test::anonymous_namespace{virtualsites.cpp}::VirtualSiteTest::VirtualSite
atomIndex :
MolecularTopologyAtomIndices
,
gmx::InterdependentTask
atomIndexInMolecule :
AtomInMolblock
atomIndices :
NbnxmGpu
,
Nbnxm::GridSetData
,
NbnxmGpu
atomIndicesSize :
NbnxmGpu
atomIndicesSize_alloc :
NbnxmGpu
atomInfo :
gmx::AtomInfoWithinMoleculeBlock
,
gmx::test::anonymous_namespace{kernel_test.cpp}::TestSystem
atomInfoAllVdw :
gmx::BenchmarkSystem
atomInfoOxygenVdw :
gmx::BenchmarkSystem
atomJ :
gmx::PairDistValue
atomname :
PreprocessResidue
atomName :
BaseEntry
atomNumber :
gmx::ExclusionBlock
atomNumbers_ :
gmx::QMMMParameters
atomRange :
gmx::PpCommManager
atoms :
MoleculeInformation
,
PmeGpuKernelParamsBase
,
gmx::Lincs
,
gmx::OutputRequirements
,
gmx_moltype_t
,
gmx::test::anonymous_namespace{nb_free_energy.cpp}::ListInput
atomSet :
gmx_enfrotgrp
,
swap_group
atomSet_ :
pull_group_work_t
atomSetData_ :
gmx::LocalAtomSetManager::Impl
atomtype :
VirtualSiteConfiguration
atomTypes :
gmx::BenchmarkSystem
,
gmx::test::anonymous_namespace{kernel_test.cpp}::TestSystem
,
NBAtomDataGpu
aver :
t_UmbrellaWindow
averager_ :
gmx::internal::BasicHistogramImpl
awhHistory :
t_state
awhParams :
gmx::test::AwhTestParameters
axis_x :
t_matrix
axis_y :
t_matrix
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