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- b -
b :
t_pargs
,
BondedInteractionList
,
gmx_ana_selvalue_t
,
gmx::CromerMannParameters
,
gmx_ana_poscalc_t
,
gmx_ana_indexmap_t
b0 :
anonymous_namespace{lincs.cpp}::Task
b1 :
anonymous_namespace{lincs.cpp}::Task
bAcceptBooleanNoPrefix_ :
gmx::OptionsAssigner::Impl
backboneIndices_ :
gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo
backboneIndicesStatus_ :
gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo
bAllowMissing_ :
gmx::AnalysisDataModuleManager::Impl
bAllowPositionalArguments_ :
gmx::CommandLineParser::Impl
bAllowReduceIact :
UmbrellaOptions
bAlreadyPresent :
MoleculePatch
baros_integral :
t_state
baseid :
gmx_ana_poscalc_t
baseLatency :
gmx::HardwareTopology::Numa
bAuto :
UmbrellaOptions
bb :
NbnxnPairlistCpuWork::IClusterData
bBoolNo :
gmx_sel_lexer_t
bBox :
TpxFileHeader
bBuffer :
gmx_sel_lexer_t
bc :
dd_corners_t
bCalcTauInt :
UmbrellaOptions
bCmdStart :
gmx_sel_lexer_t
bCommIter :
gmx::Lincs
bConnected :
gmx::ImdSession::Impl
bConstForce :
anonymous_namespace{edsam.cpp}::t_edflood
bContrib :
t_UmbrellaWindow
bcr1 :
dd_corners_t
bCumulative_ :
gmx::AnalysisDataLifetimeModule::Impl
bCycl :
UmbrellaOptions
bDataProperty_ :
gmx::AnalysisDataModuleManager::Impl
bDiscrete :
t_matrix
bDoTime :
NbnxmGpu
bDynamicBox :
nbnxn_atomdata_t
bEquil :
df_history_t
beta :
gmx::DimParams::FepDimParams
,
gmx::test::AwhTestParameters
betak :
gmx::DimParams::PullDimParams
bEval :
gmx_ana_poscalc_t
bExternalGroupsSet_ :
gmx::SelectionCollection::Impl
bExternalPotentialProviderHasBeenRegistered :
pull_coord_work_t
bF :
TpxFileHeader
bFirst :
gmx::AnalysisDataDisplacementModule::Impl
bFirstRow_ :
gmx::TextTableFormatter::Impl
bForceActivated :
gmx::ImdSession::Impl
bGenerateHH14Interactions :
PreprocessResidue
bGroups :
gmx_sel_lexer_t
bHarmonic :
anonymous_namespace{edsam.cpp}::t_edflood
bHelix :
t_bb
bHidden_ :
gmx::CommandLineHelpContext::Impl
bHistOnly :
UmbrellaOptions
bhost_UNUSED :
CheckpointHeaderContents
bias_ :
gmx::BiasCoupledToSystem
,
gmx::test::BiasTest
,
gmx::test::BiasFepLambdaStateTest
biasIndex_ :
gmx::BiasParams
biasState_ :
gmx::test::BiasStateTest
bin :
t_partition_item
,
methoddata_insolidangle
binaryName_ :
gmx::CommandLineModuleManager::Impl
bInit_ :
gmx::PositionCalculationCollection::Impl
bInitPotByIntegration :
UmbrellaOptions
bInputCheckingDisabled_ :
gmx::FileNameOptionManager::Impl
bins :
UmbrellaOptions
bInUse_ :
gmx::test::internal::TestReferenceDataImpl
bIr :
TpxFileHeader
bKeepAllGeneratedDihedrals :
PreprocessResidue
blbnb :
gmx::Lincs
blc :
gmx::Lincs
blc1 :
gmx::Lincs
bllen :
gmx::Lincs
bllen0 :
gmx::Lincs
blmf :
gmx::Lincs
blmf1 :
gmx::Lincs
blnr :
gmx::Lincs
blocka_ :
anonymous_namespace{indexutil.cpp}::IndexBlockTest
blockIndex :
MolecularTopologyAtomIndices
blockLengthMeasure_ :
gmx::CorrelationGrid
blockSize :
KernelLaunchConfig
blockstack :
gmx_sel_mempool_t
blockstack_nalloc :
gmx_sel_mempool_t
blockSumWeightX :
gmx::CorrelationBlockData::CoordData
bLog :
UmbrellaOptions
bMatchBool :
gmx_sel_lexer_t
bMatchOf :
gmx_sel_lexer_t
bMultipoint_ :
gmx::AbstractAnalysisData::Impl
bNewForces :
gmx::ImdSession::Impl
bNonLocalStreamDoneMarked :
NbnxmGpu
bNPT :
gmx_repl_ex
body :
PartialDeserializedTprFile
bond :
VirtualSiteTopology
bonds :
AllVsiteBondedInteractions
boolt :
gmx::SelectionTreeElement
bOrires :
t_mdatoms
bOut :
gmx_enfrot
box :
gmx::test::anonymous_namespace{kernel_test.cpp}::TestSystem
,
gmx::OutputRequirements
,
gmx_pme_comm_n_box_t
,
t_state
,
gmx::BenchmarkSystem
,
gmx::test::TrajectoryTolerances
,
t_pbc
box_ :
gmx::MDModulesAtomsRedistributedSignal
,
gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest
,
gmx::ForceProviderInput
box_rel :
t_state
boxOutputInterval :
gmx_tng_trajectory
boxScaler :
PmeShared
boxv :
gmx::PTCouplingArrays
,
t_state
boxVolume :
PmeGpuDynamicParams
,
SolveKernelParams
boxXX :
PbcAiuc
boxYX :
PbcAiuc
boxYY :
PbcAiuc
boxZX :
PbcAiuc
boxZY :
PbcAiuc
boxZZ :
PbcAiuc
bParallel :
gmx::AnalysisDataModuleManager::Impl::ModuleInfo
bParallelModules_ :
gmx::AnalysisDataModuleManager::Impl
bPBC :
gmx::TrajectoryAnalysisSettings::Impl
,
t_methoddata_pos
bPerturbed :
t_mdatoms
bPrefetchLjParam :
NbnxmGpu
bPrintCOM :
t_UmbrellaHeader
bPrintComp :
t_UmbrellaHeader
bPrintHeader_ :
gmx::TextTableFormatter::Impl
bPrintRefValue :
t_UmbrellaHeader
bProcessed :
MoleculeInformation
bProf0Set :
UmbrellaOptions
bPullx :
UmbrellaOptions
bQuiet_ :
gmx::CommandLineModuleManager::Impl
bRemoveDihedralIfWithImproper :
PreprocessResidue
bRmPBC :
gmx::TrajectoryAnalysisSettings::Impl
bSelfTestMode_ :
gmx::test::internal::TestReferenceDataImpl
,
gmx::test::TestReferenceChecker::Impl
bSerialModules_ :
gmx::AnalysisDataModuleManager::Impl
bSet :
t_pargs
,
t_nbparam
bSkipUnknown_ :
gmx::CommandLineParser::Impl
bSorted :
t_methoddata_same
bsp_mod :
PmeShared
bsSeed :
UmbrellaOptions
bStatic :
gmx_ana_indexmap_t
bsWeight :
t_UmbrellaWindow
bSym :
UmbrellaOptions
bTakeComplement :
gmx_help_make_index_group
bTaskDep :
gmx::Lincs
bTaskDepTri :
gmx::Lincs
bTerminatable :
gmx::ImdSession::Impl
btime_UNUSED :
CheckpointHeaderContents
bTop :
TpxFileHeader
buf :
t_symbuf
buffer :
gmx_sel_mempool_t
,
gmx_sel_lexer_t
buffer_flags :
PairsearchWork
bufsize :
t_symbuf
,
gmx_enfrot
bugs_ :
gmx::CommandLineHelpWriter::Impl
builder :
gmx::test::anonymous_namespace{observablesreducer.cpp}::ObservablesReducerIntegrationTest::RankData
builder_ :
gmx::KeyValueTreeTransformRuleBuilder::Base
,
gmx::MDModulesWriteCheckpointData
builders_ :
gmx::internal::AnalysisDataStorageImpl
buildHasBeenCalled_ :
gmx::ObservablesReducerBuilder::Impl
bUpToDate :
ekinstate_t
bus :
gmx::HardwareTopology::Device
bUse :
t_coordselection
buser_UNUSED :
CheckpointHeaderContents
bUseTwoStreams :
NbnxmGpu
bV :
TpxFileHeader
bVCMgrps :
t_mdatoms
bWarned :
AtomProperties::Impl
bWarnVDW :
AtomProperties::Impl
bWConnect :
gmx::ImdSession::Impl
bWrap_ :
gmx::TextTableFormatter::Impl::ColumnData
bX :
TpxFileHeader
bXSet :
MoleculePatch
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