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- c -
c :
t_pargs
,
dd_corners_t
,
gmx_kernel_timing_data_t
,
wallcc_t
,
t_nbparam
,
gmx::CromerMannParameters
C :
t_bb
c1 :
t_xpmelmt
c2 :
t_xpmelmt
c_labelSize :
gmx::CrystallographicLabels
c_numCorrelationBlocks :
gmx::CorrelationTensor
c_numEigenRealsPerExperiment :
t_oriresdata
c_numPointsPerSigma :
gmx::BiasGrid
c_rf :
NBParamGpu
,
cl_nbparam_params
c_scopeCutoff :
gmx::BiasGrid
CA :
t_bb
cACC :
t_mdatoms
cAcceleration_ :
gmx::Update::Impl
caches :
gmx::HardwareTopology::Machine
calculationIntervalInSteps_ :
gmx::DensityFittingParameters
calcVirial :
gmx::test::anonymous_namespace{settle.cpp}::SettleTestParameters
callback :
gmx::test::anonymous_namespace{textreader.cpp}::TextReaderTestParams
callbackAfterReduction :
gmx::ObservablesReducerBuilder::Impl::Subscription
callbackFromBuilder :
gmx::ObservablesReducerBuilder::Impl::Subscription
callbacksAfterReduction_ :
gmx::ObservablesReducer::Impl
callbackToRequireReduction :
gmx::Lincs
callbackToRequireReduction_ :
gmx::LocalTopologyChecker::Impl
,
gmx::test::anonymous_namespace{observablesreducer.cpp}::Subscriber
,
ExclusionChecker::Impl
canUseGpuAwareMpi :
gmx::DevelopmentFeatureFlags
cartSetup_ :
gmx::DomainDecompositionBuilder::Impl
cBooleanNodeName :
gmx::test::TestReferenceChecker::Impl
cc_ :
SearchCycleCounting
cCharNodeName :
gmx::test::TestReferenceChecker::Impl
cdata :
gmx::SelectionTreeElement
cell :
gmx_ga2la_t::Entry
,
gmx::cellInfo
cellAngles_ :
gmx::MrcDensityMapHeader
cellLength_ :
gmx::MrcDensityMapHeader
cells :
Nbnxm::GridSetData
cellSize :
gmx::cellInfo
,
Nbnxm::Grid::Dimensions
cellSizeAlloc :
gmx::cellInfo
cellSizesBuffer :
AtomDistribution
cellSizeX :
gmx::DomdecOptions
cellSizeY :
gmx::DomdecOptions
cellSizeZ :
gmx::DomdecOptions
cENER :
t_mdatoms
center :
methoddata_insolidangle
,
swap_group
cfrac :
methoddata_insolidangle
cFREEZE :
t_mdatoms
cFREEZE_ :
gmx::Update::Impl
cg_gl :
t_state
cg_p :
t_state
cgnr :
PreprocessResidue
,
MoleculePatch
cgrp :
gmx::SelectionTreeElement
channel_label :
swap_group
chargeA :
gmx_pme_pp
,
t_mdatoms
chargeB :
t_mdatoms
charges :
gmx::test::anonymous_namespace{pmegathertest.cpp}::TestSystem
,
gmx::BenchmarkSystem
,
gmx::test::anonymous_namespace{kernel_test.cpp}::TestSystem
checker_ :
gmx::test::anonymous_namespace{constr.cpp}::ConstraintsTest
,
gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest
,
gmx::test::anonymous_namespace{langevin.cpp}::LangevinTest
,
gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTest
,
gmx::test::anonymous_namespace{settle.cpp}::SettleTest
checkpointedData_ :
gmx::MDModulesCheckpointReadingDataOnMain
checkpointingNotifier_ :
gmx::MDModulesNotifiers
checkpointOptions :
gmx::MdrunOptions
child :
gmx::SelectionTreeElement
ci :
gmx::AnalysisDataDisplacementModule::Impl
,
nbnxn_ci_t
,
NbnxnPairlistCpu
cIdAttrName :
gmx::test::TestReferenceChecker::Impl
cInt32NodeName :
gmx::test::TestReferenceChecker::Impl
cInt64NodeName :
gmx::test::TestReferenceChecker::Impl
cIntegerNodeName :
gmx::test::TestReferenceChecker::Impl
ciOuter :
NbnxnPairlistCpu
cj :
nbnxn_cj_t
,
nbnxn_cj_packed_t
,
NbnxnPairlistCpu
,
NbnxnPairlistCpuWork
cj_ind_end :
nbnxn_ci_t
cj_ind_start :
nbnxn_ci_t
cjOuter :
NbnxnPairlistCpu
cjPacked :
Nbnxm::gpu_plist
cjPacked_nalloc :
Nbnxm::gpu_plist
cjPackedBegin :
nbnxn_sci
cjPackedEnd :
nbnxn_sci
classId :
gmx::HardwareTopology::Device
clearGpuFBufferEarly :
gmx::StepWorkload
clientsocket :
gmx::ImdSession::Impl
cmakeGridSpacing :
InteractionsOfType
cmap :
InteractionsOfType
,
gmx_cmapdata_t
cmap_grid :
gmx_ffparams_t
,
InteractionDefinitions
cmapAngles :
InteractionsOfType
cmapAtomTypes :
InteractionsOfType
cmapdata :
gmx_cmap_t
cmpop :
t_methoddata_compare
cmpt :
t_methoddata_compare
cObjectType :
gmx::test::TestReferenceChecker::Impl
code :
t_mapping
coefficientsCapacity :
PmeGpuSpecific
coefficientsSize :
PmeGpuSpecific
coll :
gmx_ana_poscalc_t
collection_ :
gmx::SelectionOptionManager::Impl
columnCounts_ :
gmx::AbstractAnalysisData::Impl
columnRowSectionStart_ :
gmx::MrcDensityMapHeader
columnRowSectionToXyz_ :
gmx::MrcDensityMapHeader
columns_ :
gmx::TextTableFormatter::Impl
colvarStateFile_ :
gmx::ColvarsForceProviderState
combineMtsForcesBeforeHaloExchange :
gmx::StepWorkload
comm_ :
gmx::PhysicalNodeCommunicator
commandLineForMdrun_ :
gmx::test::DensityFittingTest
commentChar_ :
gmx::TextReader::Impl
commGuard_ :
gmx::PhysicalNodeCommunicator
common :
PmeGpu
commRec_ :
gmx::SimulatorEnv
communicationBuffer_ :
gmx::ObservablesReducer::Impl
,
gmx::test::anonymous_namespace{observablesreducer.cpp}::Subscriber
communicator_ :
gmx::MDModulesCheckpointReadingBroadcast
comp :
swap_group
comp_from :
swap_group
comp_now :
swap_group
compareRootEntry_ :
gmx::test::internal::TestReferenceDataImpl
,
gmx::test::TestReferenceChecker::Impl
compareto :
gmx_help_make_index_group
comparisonSquaredSum :
gmx::anonymous_namespace{densityfit.cpp}::CrossCorrelationEvaluationHelperValues
completionWriter_ :
gmx::CommandLineHelpContext::Impl
complexGrid_ :
gmx::Gpu3dFft::Impl
complexGridSize :
PmeGpuGridParams
,
SolveKernelParams
,
PmeGpuSpecific
complexGridSizePadded :
PmeGpuGridParams
,
SolveKernelParams
compressed_symmetric :
gmx_sparsematrix
computeDhdl :
gmx::StepWorkload
computeEnergy :
gmx::StepWorkload
computeForces :
gmx::StepWorkload
computeListedForces :
gmx::StepWorkload
computeMuTot :
gmx::SimulationWorkload
computeNonbonded :
gmx::SimulationWorkload
computeNonbondedAtMtsLevel1 :
gmx::SimulationWorkload
computeNonbondedForces :
gmx::StepWorkload
computePmeOnSeparateRank :
gmx::StepWorkload
computeSlowForces :
gmx::StepWorkload
computeVirial :
gmx::StepWorkload
computeVirial_ :
gmx::ForceWithVirial
computeVirialAndEnergy :
Nbnxm::KernelBenchOptions
con_index :
gmx::Lincs
constantEnsembleTemperature_ :
gmx::EnsembleTemperature
constants :
PmeGpuKernelParamsBase
constEfl :
anonymous_namespace{edsam.cpp}::t_edflood
constr :
anonymous_namespace{minimize.cpp}::EnergyEvaluator
,
gmx::ConstraintsParam
constr_ :
gmx::LegacySimulatorData
constraint_distance_squared :
gmx::shakedata
constraintCommunicationRange :
gmx::DomdecOptions
constraintRmsDeviation :
gmx::Lincs
constraints_ :
gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest
constructingAtomIdx :
gmx::test::anonymous_namespace{virtualsites.cpp}::VirtualSiteTest::VirtualSite
context_ :
gmx::DeviceStreamManager::Impl
convolveForce :
gmx::BiasParams
coord_unit :
t_pullcoord
coordinate_ :
gmx::GaussianSpreadKernelParameters::PositionAndAmplitude
,
gmx::RealFunctionvalueAtCoordinate
coordinateManager_ :
gmx::analysismodules::anonymous_namespace{msd.cpp}::MsdGroupData
coordinates :
gmx::BenchmarkSystem
,
gmx::test::anonymous_namespace{kernel_test.cpp}::TestSystem
,
gmx::test::anonymous_namespace{pmegathertest.cpp}::TestSystem
coordinates_ :
gmx::OptimisationResult
,
gmx::test::FrictionMetricTest
,
gmx::test::BiasTest
coordinatesComparison :
gmx::test::TrajectoryFrameMatchSettings
coordsel :
UmbrellaOptions
coordsendbuf :
gmx::ImdSession::Impl
coordValue :
gmx::GridPoint
copyAllOutputs :
PmeGpuSettings
core_pinning_offset :
gmx_hw_opt_t
core_pinning_stride :
gmx_hw_opt_t
coreBits :
gmx::anonymous_namespace{cpuinfo.cpp}::ApicIdLayout
coreIdInPackage :
gmx::CpuInfo::LogicalProcessor
coreRankInPackage :
gmx::HardwareTopology::LogicalProcessor
cores :
gmx::HardwareTopology::Package
cORF :
t_mdatoms
correlationGrid_ :
gmx::test::FrictionMetricTest
coulomb_tab :
NBParamGpu
coulomb_tab_scale :
cl_nbparam_params
,
NBParamGpu
coulomb_tab_texobj :
NBParamGpu
coulombKernelType :
gmx::test::anonymous_namespace{kernel_test.cpp}::KernelInputParameters
coulombType :
gmx::test::anonymous_namespace{kernel_test.cpp}::KernelOptions
,
Nbnxm::KernelBenchOptions
count :
pme_setup_t
countArray_ :
gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData
couplingTime :
gmx::TemperatureCouplingData
couplingTimeStep :
gmx::TemperatureCouplingData
covariance :
gmx::anonymous_namespace{densityfit.cpp}::CrossCorrelationEvaluationHelperValues
cp0 :
NbnxnPairlistCpuWork
,
PairsearchWork
,
NbnxnPairlistCpu
cp1 :
PairsearchWork
,
NbnxnPairlistCpu
,
NbnxnPairlistCpuWork
Cprev :
t_bb
cr :
anonymous_namespace{minimize.cpp}::EnergyEvaluator
cr0 :
dd_corners_t
cr1 :
dd_corners_t
cr_ :
gmx::ImdSession::Impl
,
gmx::LocalTopologyChecker::Impl
,
gmx::LegacySimulatorData
,
gmx::ForceProviderInput
,
ExclusionChecker::Impl
,
gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest
,
gmx::DomainDecompositionBuilder::Impl
cRealNodeName :
gmx::test::TestReferenceChecker::Impl
cSequenceLengthName :
gmx::test::TestReferenceChecker::Impl
cSequenceType :
gmx::test::TestReferenceChecker::Impl
cStringNodeName :
gmx::test::TestReferenceChecker::Impl
csv :
gmx::BenchmarkSystem
cTC :
t_mdatoms
cTC_ :
gmx::Update::Impl
cU1 :
t_mdatoms
cU2 :
t_mdatoms
cUCharNodeName :
gmx::test::TestReferenceChecker::Impl
cUInt32NodeName :
gmx::test::TestReferenceChecker::Impl
cUInt64NodeName :
gmx::test::TestReferenceChecker::Impl
cum :
t_UmbrellaWindow
current :
PmeGpuKernelParamsBase
currentFrame_ :
gmx::internal::AnalysisDataHandleImpl
currentLambdaState :
gmx::test::anonymous_namespace{freeenergyparameters.cpp}::FreeEnergyParameterTestParameters
currentLifetimes_ :
gmx::AnalysisDataLifetimeModule::Impl
currentLocation :
gmx_sel_lexer_t
currentOption_ :
gmx::OptionsAssigner::Impl
currentValueCount_ :
gmx::OptionsAssigner::Impl
currIndex_ :
gmx::AnalysisDataModuleManager::Impl
currsize :
gmx_sel_mempool_t
currValues_ :
gmx::AnalysisDataDisplacementModule::Impl
cutoff :
t_methoddata_distance
cVCM :
t_mdatoms
cVectorType :
gmx::test::TestReferenceChecker::Impl
cxy_ind :
NbnxmGpu
cxy_na :
NbnxmGpu
cycleCounter :
PairsearchWork
cycleCounting_ :
PairSearch
cycles :
gmx_pme_comm_vir_ene_t
,
pme_setup_t
cyclesLastCpu :
BalanceRegion::Impl
cyclesOpenCpu :
BalanceRegion::Impl
cyclesPerPair :
Nbnxm::KernelBenchOptions
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