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- n -
N :
t_UmbrellaWindow
,
t_bb
n :
t_coordselection
,
t_methoddata_kwreal
,
methoddata_permute
,
partition
,
wallcc_t
,
gmx_fft_fftpack
,
spheresurfacebin
,
t_methoddata_kwint
n_alloc :
spheresurfacebin
n_at_lam :
df_history_t
na_c :
Nbnxm::gpu_plist
na_ci :
NbnxnPairlistCpu
na_cj :
NbnxnPairlistCpu
nalloc :
gmx_sparsematrix
,
gmx_ana_selvalue_t
,
swap_compartment
nalloc_index :
gmx_ana_index_t
nalloc_loc :
gmx::ImdSession::Impl
nalloc_x :
gmx_ana_pos_t
name :
IndexGroup
,
gmx_moltype_t
,
MoleculeInformation
,
MoleculePatchDatabase
,
MoleculeType
,
gmx::SelectionTreeElement
,
t_register_method
,
gmx_ana_selmethod_t
,
gmx_ana_selparam_t
,
gmx::ConvertTprInfo
,
gmx::NonbondedBenchmarkInfo
,
t_interaction_function
name_ :
gmx::ColvarsModuleInfo
,
gmx::DensityFittingModuleInfo
,
gmx::QMMMModuleInfo
,
gmx::internal::OptionSectionImpl
,
gmx::SelectionParserSymbol::Impl
,
gmx::DataFileInfo
names :
gmx_ana_indexgrps_t
namesOfEnergiesToMatch_ :
gmx::test::PeriodicActionsTest
nas :
t_methoddata_same
nat :
gmx::ImdSession::Impl
,
ilist_data_t
,
gmx_slabdata
nat_loc :
gmx::ImdSession::Impl
natoms :
gmx_pme_comm_n_box_t
,
CheckpointHeaderContents
,
TpxFileHeader
nAtoms :
PmeGpuAtomParams
nAtomsAlloc :
PmeGpu
natpair_lj_ :
PairlistSet
natpair_ljq_ :
PairlistSet
natpair_q_ :
PairlistSet
nattempt :
gmx_repl_ex
nb :
t_methoddata_distance
nb_c :
gmx_wallclock_gpu_nbnxn_t
nb_d2h :
Nbnxm::GpuTimers::XFTransfers
nb_d2h_t :
gmx_wallclock_gpu_nbnxn_t
nb_h2d :
Nbnxm::GpuTimers::XFTransfers
nb_h2d_t :
gmx_wallclock_gpu_nbnxn_t
nb_k :
Nbnxm::GpuTimers::Interaction
nbfp :
NBParamGpu
,
nbnxn_atomdata_t::Params
nbfp_aligned :
nbnxn_atomdata_t::Params
nbfp_comb :
nbnxn_atomdata_t::Params
,
NBParamGpu
nbfp_comb_texobj :
NBParamGpu
nbfp_texobj :
NBParamGpu
nBin :
t_UmbrellaWindow
nbins :
methoddata_insolidangle
nbl_fep :
PairsearchWork
nblocks :
gmx_sel_mempool_t
nbnxmSimd :
Nbnxm::KernelBenchOptions
nBootStrap :
UmbrellaOptions
nbparam :
NbnxmGpu
nbsearch :
t_methoddata_distance
nbst :
NbnxmGpu
nc :
gmx::Lincs
nc_real :
gmx::Lincs
ncc :
gmx::Lincs
ncc_triangle :
gmx::Lincs
ncg :
gmx::Lincs
ncg_flex :
gmx::Lincs
ncg_triangle :
gmx::Lincs
nChargePerturbed :
t_mdatoms
ncj_hlj :
NbnxnPairlistCpuWork
ncj_noq :
NbnxnPairlistCpuWork
ncjInUse :
NbnxnPairlistCpu
ncjPacked :
Nbnxm::gpu_plist
nColvarsAtoms_ :
gmx::ColvarsForceProviderState
nCoordsel :
UmbrellaOptions
nctl :
MoleculePatch
ncxy_ind :
NbnxmGpu
ncxy_ind_alloc :
NbnxmGpu
ncxy_na :
NbnxmGpu
ncxy_na_alloc :
NbnxmGpu
nCyl :
swap_group
nCylBoth :
swap_group
ndata :
gmx_sparsematrix
ndecompdim :
PmeShared
ndim :
gmx::AnalysisDataDisplacementModule::Impl
,
gmx_fft_fftw3
,
gmx_fft_mkl
,
t_pullcoord
ndim_ePBC :
t_pbc
ndistc :
PairsearchWork
nED :
CheckpointHeaderContents
needsMasses_ :
gmx::SelectionTopologyProperties
needsTopology_ :
gmx::SelectionTopologyProperties
needToCalcCom :
pull_group_work_t
neig :
anonymous_namespace{edsam.cpp}::t_eigvec
neighbor :
gmx::GridPoint
nenergrp :
t_mdatoms
neom :
gmx_sel_lexer_t
neutronIsotropicScatteringLength :
gmx::AtomicStructureFactor
newBox :
gmx::OutputRequirements
newx :
MoleculePatch
nex :
gmx_repl_ex
nexchange :
gmx_repl_ex
nexcl :
Nbnxm::gpu_plist
nexpsel :
gmx_sel_lexer_t
next :
t_symbuf
,
gmx_fft_fftpack
,
gmx::detail::extents_analyse< R, E0, StaticExtents...>
,
gmx::detail::extents_analyse< R, dynamic_extent, StaticExtents...>
,
gmx_ana_poscalc_t
,
gmx::SelectionTreeElement
nextHeavyType :
VirtualSiteConfiguration
nextIndex_ :
gmx::internal::AnalysisDataStorageImpl
nextLineIndex_ :
gmx::TextTableFormatter::Impl::ColumnData
nextLineOffset_ :
gmx::TextTableFormatter::Impl::ColumnData
nextMethodSymbol :
gmx_sel_lexer_t
nextparam :
gmx_sel_lexer_t
nextResi_ :
gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo
nFile_ :
gmx::LegacySimulatorData
nforces :
gmx::ImdSession::Impl
ngrids :
PmeShared
ngroup :
t_pullcoord
ngrp :
t_swap
ngtc :
CheckpointHeaderContents
,
t_state
,
TpxFileHeader
nhchainlength :
CheckpointHeaderContents
,
t_state
nhpres_vxi :
gmx::PTCouplingArrays
,
t_state
nhpres_xi :
gmx::PTCouplingArrays
,
t_state
nhx :
t_bb
nHydrogens :
VirtualSiteConfiguration
nimask :
Nbnxm::gpu_plist
nIter :
gmx::Lincs
nk :
PmeShared
nLambda :
gmx::test::anonymous_namespace{freeenergyparameters.cpp}::FreeEnergyParameterTestParameters
nlambda :
CheckpointHeaderContents
,
df_history_t
nlhelp :
gmx_ana_selmethod_help_t
nlocat :
gmx::Lincs
nMassPerturbed :
t_mdatoms
nmax :
gmx::AnalysisDataDisplacementModule::Impl
nmol :
gmx_molblock_t
nMol :
swap_compartment
nMolAv :
swap_compartment
nMolBefore :
swap_compartment
nMolPast :
swap_compartment
nMolReq :
swap_compartment
nmoves :
gmx_repl_ex
nn :
PmeShared
nname :
MoleculePatch
Nnext :
t_bb
nnhpres :
CheckpointHeaderContents
,
t_state
nnodes :
CheckpointHeaderContents
,
PmeShared
nnodesX :
PmeShared
nnodesY :
PmeShared
nodeid :
PmeShared
nodeidX :
PmeShared
nodeidY :
PmeShared
nodes :
gmx::HardwareTopology::Numa
nonbondedParameters :
gmx::test::anonymous_namespace{kernel_test.cpp}::TestSystem
,
gmx::BenchmarkSystem
nonlocal_done :
NbnxmGpu
nOrder :
gmx::Lincs
normalDistribution :
UmbrellaOptions
normalizationType_ :
gmx::AwhEnergyBlock
normalizationValue_ :
gmx::AwhEnergyBlock
normalizeDensities_ :
gmx::DensityFittingParameters
nosehoover_vxi :
t_state
,
gmx::PTCouplingArrays
nosehoover_xi :
gmx::PTCouplingArrays
,
t_state
notifiers_ :
gmx::DomainDecompositionBuilder::Impl
nparams :
gmx_ana_selmethod_t
npbcdim :
UnitCellInfo
nPerturbed :
t_mdatoms
npme :
CheckpointHeaderContents
nPull :
t_UmbrellaWindow
npullcrds :
t_UmbrellaHeader
nr :
gmx_ana_selvalue_t
,
MoleculePatch
,
t_mdatoms
,
t_ilist
nral :
LocalSettleData
nratoms :
t_interaction_function
nrecv :
gmx_specatsend_t
nrepl :
gmx_repl_ex
nreq :
gmx_domdec_specat_comm_t
nrexcl :
MoleculeInformation
,
PreprocessResidue
nrfpB :
t_interaction_function
nrms :
t_bb
nrnb :
anonymous_namespace{minimize.cpp}::EnergyEvaluator
nrnb_ :
gmx::Profiling
,
gmx::LegacySimulatorData
nrow :
gmx_sparsematrix
nscanTemporary :
Nbnxm::gpuPlistSorting
nsci :
Nbnxm::gpu_plist
nsciCounted :
Nbnxm::gpuPlistSorting
nsciHistogram :
Nbnxm::gpuPlistSorting
nsciOffset :
Nbnxm::gpuPlistSorting
nsciSorted :
Nbnxm::gpuPlistSorting
nst :
gmx_repl_ex
nsteps_done :
gmx_walltime_accounting
nsteps_done_at_reset :
gmx_walltime_accounting
nstimd :
gmx::ImdSession::Impl
nstimd_new :
gmx::ImdSession::Impl
nstlist_cmdline :
gmx::LegacyMdrunOptions
nstlistPrune :
PairlistParams
nstored :
gmx::AnalysisDataDisplacementModule::Impl
nstpcouple :
gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters
nstrout :
gmx_enfrot
nstsout :
gmx_enfrot
ntask :
gmx::Lincs
ntbins :
methoddata_insolidangle
nth :
omp_module_nthreads_t
nthreads :
bonded_threading_t
nthreads_omp :
gmx_hw_opt_t
nthreads_omp_pme :
gmx_hw_opt_t
nthreads_tmpi :
gmx_hw_opt_t
nthreads_tot :
gmx_hw_opt_t
ntompOptionIsSet :
gmx::MdrunOptions
Ntot :
t_UmbrellaWindow
ntriangle :
anonymous_namespace{lincs.cpp}::Task
,
gmx::Lincs
ntric_vec :
t_pbc
nTypePerturbed :
t_mdatoms
ntypes :
t_idef
num_defining_atomnames :
gmx_help_make_index_group
numa :
gmx::HardwareTopology::Machine
numAnglesRemoved :
gmx::QMMMTopologyInfo
numaNodeId :
gmx::HardwareTopology::Device
,
gmx::HardwareTopology::Core
,
gmx::HardwareTopology::LogicalProcessor
numAtoms :
AtomDistribution::DomainAtomGroups
,
PpRanks
,
PpRanksSendFInfo
,
gmx::test::anonymous_namespace{langevin.cpp}::LangevinTestParameters
,
MoleculeType
,
gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters
,
NBAtomDataGpu
numAtomsAlloc :
NBAtomDataGpu
numAtomsICluster :
Nbnxm::Grid::Geometry
numAtomsICluster2Log :
Nbnxm::Grid::Geometry
numAtomsJCluster :
Nbnxm::Grid::Geometry
numAtomsLocal :
NBAtomDataGpu
numAtomsPerCell :
Nbnxm::Grid::Geometry
numAtomsPerColumn :
Nbnxm::GridWork
numAtomsPerMolecule :
MoleculeBlockIndices
numAtomTypes :
gmx::test::anonymous_namespace{kernel_test.cpp}::TestSystem
,
gmx::BenchmarkSystem
numBondedInteractions :
thread_work_t
numBondsRemoved :
gmx::QMMMTopologyInfo
numBoundedDimensions :
UnitCellInfo
numCells :
gmx::DomdecOptions
,
Nbnxm::Grid::Dimensions
numColumnRowSection_ :
gmx::MrcDensityMapHeader
numConnBondsAdded :
gmx::QMMMTopologyInfo
numConstrainedBondsInQMSubsystem :
gmx::QMMMTopologyInfo
numConstraints :
gmx::LincsDeviations
numDDDimensions :
DDGridSetup
numDegreesOfFreedom :
gmx::TemperatureCouplingData
numDihedralsRemoved :
gmx::QMMMTopologyInfo
numDim_ :
gmx::test::FrictionMetricTest
numDomains :
DDGridSetup
numEnergyGroups :
nbnxn_atomdata_t::Params
numExchanges :
ReplicaExchangeParameters
numExclusionsMade :
gmx::QMMMTopologyInfo
numExperiments :
t_oriresdata
numFepLambdaStates :
gmx::DimParams::FepDimParams
numFile :
gmx::LegacyInput
numFrames :
gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTestParameters
numInteractions :
t_forcetable
numIterations :
Nbnxm::KernelBenchOptions
numLevels :
gmx::GromppMtsOpts
numLinkBonds :
gmx::QMMMTopologyInfo
numMMAtoms :
gmx::QMMMTopologyInfo
numMolecules :
MoleculeType
numNonperturbedInteractions :
InteractionDefinitions
numOpenMPThreads :
gmx_walltime_accounting
numPmeOnlyRanks :
DDGridSetup
numPmeRanks :
gmx::DomdecOptions
numPoints_ :
gmx::test::FrictionMetricTest
numPreIterations :
Nbnxm::KernelBenchOptions
numQMAtoms :
gmx::QMMMTopologyInfo
numRanks_ :
gmx::test::anonymous_namespace{observablesreducer.cpp}::Subscriber
numRanksPerSimulation_ :
gmx::test::MultiSimTest
numRestraints :
t_oriresdata
numRollingPruningParts :
PairlistParams
numSamplesUpdateFreeEnergy_ :
gmx::BiasParams
numSettle :
LocalSettleData
numSettleRemoved :
gmx::QMMMTopologyInfo
numSettles :
gmx::test::anonymous_namespace{settle.cpp}::SettleTestParameters
numSharedUpdate :
gmx::BiasParams
numSimulations_ :
gmx_multisim_t
numSteps :
gmx::test::anonymous_namespace{langevin.cpp}::LangevinTestParameters
,
gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters
numStepsCommandline :
gmx::MdrunOptions
numSubscribers_ :
gmx::test::anonymous_namespace{observablesreducer.cpp}::ObservablesReducerIntegrationTest
numTablePoints :
t_forcetable
numTCoupleGroups :
gmx::test::anonymous_namespace{langevin.cpp}::LangevinTestParameters
,
gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters
numThreads :
Nbnxm::KernelBenchOptions
,
gmx::test::anonymous_namespace{kernel_test.cpp}::KernelOptions
numTypes :
NBAtomDataGpu
,
nbnxn_atomdata_t::Params
numUsedLabels_ :
gmx::CrystallographicLabels
numVirtualSitesModified :
gmx::QMMMTopologyInfo
numWarmupIterations :
Nbnxm::KernelBenchOptions
nuse :
gmx::InterdependentTask
nUse :
t_coordselection
nvalptr :
gmx_ana_selparam_t
nvars :
gmx_ana_selcollection_t
nx :
gmx_fft_mkl
,
t_matrix
ny :
t_matrix
,
gmx_fft_mkl
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