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- r -
r :
t_pargs
,
gmx::SelectionParserValue
,
t_compare_value
,
t_methoddata_kwint
,
gmx_ana_selvalue_t
,
t_methoddata_kwreal
r1 :
gmx::SelectionParserValue
r2 :
gmx::SelectionParserValue
radacc :
anonymous_namespace{edsam.cpp}::t_edvecs
radcon :
anonymous_namespace{edsam.cpp}::t_edvecs
radfix :
anonymous_namespace{edsam.cpp}::t_edvecs
radius :
anonymous_namespace{edsam.cpp}::t_eigvec
randomSeed :
ReplicaExchangeParameters
rangeEnd :
gmx::VsiteThread
rangeStart :
gmx::VsiteThread
rank_ :
gmx::PhysicalNodeCommunicator
,
gmx::test::MultiSimTest
rankData_ :
gmx::test::anonymous_namespace{observablesreducer.cpp}::ObservablesReducerIntegrationTest
rankId :
PpRanks
,
PpRanksSendFInfo
rankOrder :
gmx::DomdecOptions
ranksX :
PmeGpuHaloExchange
ranksY :
PmeGpuHaloExchange
rb :
PreprocessResidue
,
MoleculePatchDatabase
rcoulomb_sq :
NBParamGpu
,
cl_nbparam_params
rcut_coulomb :
pme_setup_t
ready :
gmx::PpCommManager
real_fft :
gmx_fft_mkl
real_transform :
gmx_fft_fftw3
realddxyz :
gmx::LegacyMdrunOptions
realGrid_ :
gmx::Gpu3dFft::ImplSyclRocfft::Impl
realGridCapacity :
PmeGpuSpecific
realGridSize :
PmeGpuGridParams
,
PmeGpuSpecific
,
SolveKernelParams
realGridSizeFP :
PmeGpuGridParams
realGridSizePadded :
PmeGpuGridParams
recalculateSplines :
PmeGpuSettings
recipBox :
PmeGpuDynamicParams
,
SolveKernelParams
recordCycles_ :
SearchCycleCounting
redirector_ :
gmx::FileNameOptionManager::Impl
reduceSoon_ :
gmx::ObservablesReducer::Impl
reduceTask :
gmx::InterdependentTask
reductionBuffer_ :
gmx::LocalTopologyChecker::Impl
,
ExclusionChecker::Impl
ref :
gmx_slabdata
refcount :
t_compiler_data
,
gmx_ana_poscalc_t
refCountArray_ :
gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData
refData_ :
gmx::test::anonymous_namespace{constr.cpp}::ConstraintsTest
,
gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest
,
gmx::test::anonymous_namespace{langevin.cpp}::LangevinTest
,
gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTest
,
gmx::test::anonymous_namespace{settle.cpp}::SettleTest
referenceFileNames_ :
gmx::test::PeriodicActionsTest
referencePositions :
gmx_enfrotgrp
referenceProjectionSlope :
anonymous_namespace{edsam.cpp}::t_edflood
referenceSquaredSum :
gmx::anonymous_namespace{densityfit.cpp}::CrossCorrelationEvaluationHelperValues
referenceTemperature :
gmx::TemperatureCouplingData
refid :
gmx_ana_indexmap_t
refproj :
anonymous_namespace{edsam.cpp}::t_eigvec
registeredCallbacks_ :
gmx::ObservablesReducer::Impl
relativeLatency :
gmx::HardwareTopology::Numa
releaser :
gmx::OpenClTraits< cl_context >
,
gmx::OpenClTraits< cl_command_queue >
,
gmx::OpenClTraits< cl_program >
,
gmx::OpenClTraits< cl_kernel >
remainingMMCharge :
gmx::QMMMTopologyInfo
repl :
gmx_repl_ex
replacements_ :
gmx::HelpWriterContext::Impl
replExParams :
gmx::LegacyMdrunOptions
replExParams_ :
gmx::LegacySimulatorData
reportTime :
Nbnxm::KernelBenchOptions
reppow :
gmx_ffparams_t
reproducible :
gmx::MdrunOptions
repulsion_shift :
NBParamGpu
,
cl_nbparam_params
req :
gmx_pme_pp
requests_ :
gmx::SelectionOptionManager::Impl
requiredAtoms_ :
gmx::SelectionCollection::Impl
requirementsBuilder_ :
gmx::test::FlagTest
requirePbcHandling :
gmx::test::TrajectoryFrameMatchSettings
rerun :
gmx::MdrunOptions
rerunConstructVsites :
gmx::MdrunOptions
res_a_ :
gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData
reset_time_stamp :
gmx_walltime_accounting
reset_time_stamp_per_thread :
gmx_walltime_accounting
resetHalfway :
gmx::TimingOptions
resetStep :
gmx::TimingOptions
residueName :
BaseEntry
residueNumberStart :
MoleculeBlockIndices
residueTypeMap :
AtomProperties::Impl
resname :
VirtualSiteTopology
,
PreprocessResidue
resno :
t_bb
restartWithAppending :
gmx_enfrot
restraint_ :
gmx::RestraintManager::Impl
reverseBoolean_ :
gmx::OptionsAssigner::Impl
rgb :
t_mapping
rho_ :
gmx::anonymous_namespace{neldermead.cpp}::NelderMeadParameters
right :
t_methoddata_compare
rij :
gmx::shakedata
rlist :
NbnxnPairlistCpu
rlistInner :
pme_setup_t
,
PairlistParams
rlistInner_sq :
NBParamGpu
,
cl_nbparam_params
rlistOuter :
pme_setup_t
,
PairlistParams
rlistOuter_sq :
cl_nbparam_params
,
NBParamGpu
rms_ :
gmx::MrcDataStatistics
rmsa :
t_bb
rmsdev :
t_oriresdata
rmsdReductionBuffer :
gmx::Lincs
rng :
UmbrellaOptions
rollingPrune_k :
Nbnxm::GpuTimers::Interaction
rollingPruningNumParts :
Nbnxm::gpu_plist
rollingPruningPart :
Nbnxm::gpu_plist
root :
gmx_ana_selcollection_t
rootChecker_ :
gmx::test::MockAnalysisDataModule::Impl
rootContext_ :
gmx::HelpManager::Impl
rootGroup_ :
gmx::internal::OptionSectionImpl
rootHelp :
gmx_ana_selcollection_t
rootSection_ :
gmx::internal::OptionsImpl
rot :
gmx_enfrot
rotationMatrix :
t_oriresdata
rotg :
gmx_enfrotgrp
rotmat :
gmx_enfrotgrp
,
gmx_potfit
rperm :
methoddata_permute
rpost_ :
gmx::SelectionCollection::Impl
runMode :
PmeShared
runner_ :
gmx::test::MdrunTestFixture
,
gmx::test::TerminationHelper
runScheduleWork :
anonymous_namespace{minimize.cpp}::EnergyEvaluator
runScheduleWork_ :
gmx::SimulatorConfig
,
gmx::LegacySimulatorData
rv :
t_pargs
rvdw_sq :
NBParamGpu
,
cl_nbparam_params
rvdw_switch :
NBParamGpu
,
cl_nbparam_params
rvecBuffer :
AtomDistribution
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