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- s -
s :
BondedInteraction
,
em_state
,
gmx_ana_selvalue_t
s2g0X :
PmeShared
s2g0Y :
PmeShared
s2g1X :
PmeShared
s2g1Y :
PmeShared
s_communicator :
gmx::test::MdrunTestFixtureBase
s_defaultTrajectoryTolerances :
gmx::test::TrajectoryComparison
s_globalOutputTempDirectory :
gmx::test::TestFileManager::Impl
s_hwinfo :
gmx::test::MdrunTestFixtureBase
s_inputDirectory :
gmx::test::TestFileManager::Impl
s_inputFile :
gmx::test::anonymous_namespace{pmetest.cpp}::PmeTest
s_mutexForTestFileManager :
anonymous_namespace{domain_decomposition.cpp}::DomDecSpecialCasesTest
,
gmx::test::anonymous_namespace{pmetest.cpp}::PmeTest
s_nPoints :
gmx::test::SimdBaseTest
s_numReductionBlockBits :
gmx::ThreadForceBuffer< ForceBufferElementType >
s_reductionBlockSize :
gmx::ThreadForceBuffer< ForceBufferElementType >
s_simulationDatabaseDirectory :
gmx::test::TestFileManager::Impl
s_skipReason :
gmx::test::anonymous_namespace{threadaffinity_mpi.cpp}::RequireEvenRankCountWithAtLeastFourRanks
,
gmx::test::AllowAnyRankCount
,
gmx::test::RequireRankCount< requiredNumRanks >
,
gmx::test::RequireMinimumRankCount< minimumNumRanks >
s_subscriberBufferMinimumSize :
gmx::test::anonymous_namespace{observablesreducer.cpp}::Subscriber
s_subscriberOffset :
gmx::test::anonymous_namespace{observablesreducer.cpp}::Subscriber
s_testFileManager :
anonymous_namespace{domain_decomposition.cpp}::DomDecSpecialCasesTest
,
gmx::test::anonymous_namespace{pmetest.cpp}::PmeTest
s_tprFileNames :
anonymous_namespace{domain_decomposition.cpp}::DomDecSpecialCasesTest
,
gmx::test::anonymous_namespace{pmetest.cpp}::PmeTest
sampleTimeStep_ :
gmx::test::FrictionMetricTest
sbase :
gmx_ana_poscalc_t
sblock :
gmx::shakedata
sc :
gmx_sel_lexer_t
sc_ :
gmx::SelectionCollection::Impl
sc_colvarStateFileName_ :
gmx::ColvarsForceProviderState
sc_colvarStateFileSizeName_ :
gmx::ColvarsForceProviderState
sc_maxDonorsPerResidue :
gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo
sc_nColvarsAtomsName_ :
gmx::ColvarsForceProviderState
sc_xOldWholeName_ :
gmx::ColvarsForceProviderState
scalarForce :
pull_coord_work_t
scale :
PmeGpuDynamicParams
,
t_forcetable
scaled_lagrange_multiplier :
gmx::shakedata
scaleTargetByMetric :
gmx::BiasParams
scanTemporary :
Nbnxm::gpuPlistSorting
scanTemporaryNalloc :
Nbnxm::gpuPlistSorting
sci :
Nbnxm::gpu_plist
,
nbnxn_sci
sci_nalloc :
Nbnxm::gpu_plist
sciCount :
Nbnxm::gpuPlistSorting
sciCountedNalloc :
Nbnxm::gpuPlistSorting
sciHistogram :
Nbnxm::gpuPlistSorting
sciHistogramNalloc :
Nbnxm::gpuPlistSorting
sciOffset :
Nbnxm::gpuPlistSorting
sciOffsetNalloc :
Nbnxm::gpuPlistSorting
sciSorted :
Nbnxm::gpuPlistSorting
sciSortedNalloc :
Nbnxm::gpuPlistSorting
searchCount_ :
SearchCycleCounting
sectionDepth_ :
gmx::HelpWriterContext::Impl
sectionStack_ :
gmx::OptionsAssigner::Impl
seed :
gmx::test::anonymous_namespace{langevin.cpp}::LangevinTestParameters
,
gmx_repl_ex
seed_ :
gmx::test::BiasFepLambdaStateTest
,
gmx::test::BiasTest
sel :
gmx_ana_selcollection_t
,
gmx::analysismodules::anonymous_namespace{msd.cpp}::MsdGroupData
selections_ :
gmx::TrajectoryAnalysisModuleData::Impl
sendAtom :
gmx_domdec_specat_comm_t
sendForcesDirectToPpGpu :
gmx_pme_pp
sendxbuf :
gmx::ImdSession::Impl
seqIndex_ :
gmx::test::TestReferenceChecker::Impl
sessionPossible :
gmx::ImdSession::Impl
set :
gmx::SimulationSignal
set_poscoll :
gmx_ana_selmethod_t
setNumPositionScalingVariables :
gmx::PropagatorConnection
setNumVelocityScalingVariables :
gmx::PropagatorConnection
settings :
PmeGpu
settings_ :
gmx::internal::BasicHistogramImpl
settle :
t_iparams
sfDepenOnQ_ :
gmx::ComputeDebyeScattering
sh_ewald :
NBParamGpu
,
cl_nbparam_params
sh_lj_ewald :
NBParamGpu
,
cl_nbparam_params
shared :
gmx::HardwareTopology::Cache
sharedMemorySize :
KernelLaunchConfig
shift :
nbnxn_ci_t
,
nbnxn_sci
shift0 :
DDPairInteractionRanges
shift1 :
DDPairInteractionRanges
shift_vec :
nbnxn_atomdata_t
shiftVec :
NBAtomDataGpu
shiftVecUploaded :
NBAtomDataGpu
shortDescription :
gmx::ConvertTprInfo
,
gmx::NonbondedBenchmarkInfo
sig :
gmx::SimulationSignal
sigma :
t_UmbrellaWindow
,
gmx::analysismodules::anonymous_namespace{msd.cpp}::MsdGroupData
sigma3A :
t_mdatoms
sigma3B :
t_mdatoms
sigma_ :
gmx::DensityFittingForce::Impl
,
gmx::GaussTransform3D::Impl
,
gmx::GaussianSpreadKernelParameters::Shape
,
gmx::anonymous_namespace{neldermead.cpp}::NelderMeadParameters
sigmaA :
t_mdatoms
sigmaB :
t_mdatoms
signals_ :
gmx::test::SignalTest
signFactor_ :
AtomsAdjacencyListElement
sigSmoothIact :
UmbrellaOptions
simdInternal_ :
gmx::Simd4Double
,
gmx::Simd4DBool
,
gmx::Simd4Float
,
gmx::Simd4FBool
,
gmx::SimdDouble
,
gmx::SimdDInt32
,
gmx::SimdDBool
,
gmx::SimdDIBool
,
gmx::SimdFloat
,
gmx::SimdFInt32
,
gmx::SimdFBool
,
gmx::SimdFIBool
simdRealWidth :
ScalarDataTypes
similarityMeasureMethod_ :
gmx::DensityFittingParameters
simulation_part :
CheckpointHeaderContents
simulationComm_ :
gmx_multisim_t
simulationCommunicator_ :
gmx::SimulationContext
simulationIndex_ :
gmx_multisim_t
simulationNumber_ :
gmx::test::MultiSimTest
simulationSetupNotifier_ :
gmx::MDModulesNotifiers
singleModule_ :
gmx::CommandLineModuleManager::Impl
size :
gmx::HardwareTopology::Cache
,
gmx_sel_mempool_block_t
size_ :
gmx::PhysicalNodeCommunicator
,
gmx::test::MultiSimTest
sizeOfTprBody :
TpxFileHeader
sizeRequired :
gmx::ObservablesReducerBuilder::Impl::Subscription
sizeRequired_ :
gmx::test::anonymous_namespace{observablesreducer.cpp}::Subscriber
skewData_ :
gmx::MrcDensityMapHeader
slab_buffer :
gmx_enfrotgrp
slab_center :
gmx_enfrotgrp
slab_center_ref :
gmx_enfrotgrp
slab_data :
gmx_enfrotgrp
slab_first :
gmx_enfrotgrp
slab_first_ref :
gmx_enfrotgrp
slab_innersumvec :
gmx_enfrotgrp
slab_last :
gmx_enfrotgrp
slab_last_ref :
gmx_enfrotgrp
slab_torque_v :
gmx_enfrotgrp
slab_weights :
gmx_enfrotgrp
socket :
gmx::ImdSession::Impl
solveMaxWorkGroupSize :
PmeGpuProgramImpl
sortBuffer :
Nbnxm::GridWork
,
PairsearchWork
sorting :
Nbnxm::gpu_plist
source_ :
gmx::test::MockAnalysisDataModule::Impl
sourceLayoutTreeLike_ :
gmx::InstallationPrefixInfo
spaceGroup_ :
gmx::MrcDensityMapHeader
spacing :
pme_setup_t
,
gmx::NumericalSplineTableInput
span :
methoddata_insolidangle
spas :
gmx_domdec_specat_comm_t
spatialData :
pull_coord_work_t
splineCountActive :
PmeGpuSpecific
splineDataSize :
PmeGpuSpecific
splineDataSizeAlloc :
PmeGpuSpecific
splineDerivatives :
gmx::test::anonymous_namespace{pmegathertest.cpp}::SplineData
splineValues :
gmx::test::anonymous_namespace{pmegathertest.cpp}::SplineData
splineValuesCapacity :
PmeGpuSpecific
splineValuesOffset :
SolveKernelParams
,
PmeGpuGridParams
splineValuesSize :
PmeGpuSpecific
spost_ :
gmx::SelectionCollection::Impl
spreadRange_ :
gmx::GaussTransform3D::Impl
spreadTask :
gmx::InterdependentTask
spreadWidthMultiplesOfSigma_ :
gmx::GaussianSpreadKernelParameters::Shape
spreadWorkGroupSize :
PmeGpuProgramImpl
sqrt_c6A :
t_mdatoms
sqrt_c6B :
t_mdatoms
staging :
PmeGpu
start :
wallcc_t
start_time_stamp :
gmx_walltime_accounting
startAtomOffset :
PpRanksSendFInfo
startIndex :
gmx::SelectionLocation
startingBehavior :
gmx::anonymous_namespace{handlerestart.cpp}::StartingBehaviorHandler
startingBehavior_ :
gmx::SimulatorConfig
,
gmx::LegacySimulatorData
startTimeValue :
gmx::OutputRequirements
state_ :
gmx::AnalysisDataModuleManager::Impl
,
gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest
,
gmx::LegacySimulatorData
,
gmx::HelpWriterContext::Impl
stateChanged :
gmx::StepWorkload
stateGlobal_ :
gmx::LegacySimulatorData
stateRead_ :
gmx::ColvarsForceProviderState
status :
DeviceInformation
status_ :
gmx::ObservablesReducer::Impl
statusWriter :
gmx_sel_lexer_t
step :
gmx::test::anonymous_namespace{freeenergyparameters.cpp}::FreeEnergyParameterTestParameters
,
CheckpointHeaderContents
,
gmx_pme_comm_n_box_t
step_ :
gmx::ForceProviderInput
stepchange :
UmbrellaOptions
stepFactor :
gmx::MtsLevel
stepsSinceLastCalculation_ :
gmx::DensityFittingForceProviderState
stepsSinceLastCalculationName_ :
gmx::DensityFittingForceProviderState
stepUpdateContrib :
UmbrellaOptions
stop_cond :
gmx_pme_comm_vir_ene_t
stopHandlerBuilder_ :
gmx::LegacySimulatorData
storage_ :
gmx::internal::BasicHistogramImpl
,
gmx::AnalysisData::Impl
,
gmx::SelectionOptionManager::Impl::SelectionRequest
,
gmx::internal::OptionSectionImpl
storageInitialized_ :
gmx::internal::OptionSectionImpl
storageLimit_ :
gmx::internal::AnalysisDataStorageImpl
stpsz :
anonymous_namespace{edsam.cpp}::t_eigvec
str :
gmx::SelectionParserValue
stream :
gmx::PpForceCommManager
,
gmx::PpCommManager
stream_ :
gmx::TextReader::Impl
streams_ :
gmx::DeviceStreamManager::Impl
stride :
t_forcetable
,
methoddata_merge
strides :
gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}::PlanSetupData
subgroups_ :
gmx::internal::OptionSectionImpl::Group
subscriberIndex_ :
gmx::test::anonymous_namespace{observablesreducer.cpp}::Subscriber
subscribers :
gmx::test::anonymous_namespace{observablesreducer.cpp}::ObservablesReducerIntegrationTest::RankData
subscriptions_ :
gmx::ObservablesReducerBuilder::Impl
subsections_ :
gmx::internal::OptionSectionImpl
subTopicMap_ :
gmx::AbstractCompositeHelpTopic::Impl
subTopics_ :
gmx::AbstractCompositeHelpTopic::Impl
sum_dg :
df_history_t
sum_minvar :
df_history_t
sum_variance :
df_history_t
sum_weights :
df_history_t
sumOverBlocksBlockWeightBlockWeightX :
gmx::CorrelationBlockData::CoordData
sumSquaredDeviation :
gmx::LincsDeviations
supportedSubGroupSizes :
DeviceInformation
surfaceDist2_ :
gmx::analysismodules::anonymous_namespace{rdf.cpp}::RdfModuleData
svir_prev :
t_state
swap_ :
gmx::LegacySimulatorData
swapdim :
t_swap
swapHistory :
ObservablesHistory
symbols_ :
gmx::SelectionParserSymbolTable::Impl
symtab :
gmx_ana_selcollection_t
sync :
gmx::PpCommManager
syncSpreadGridD2H :
PmeGpuSpecific
syntax :
gmx_ana_selmethod_help_t
systemInfo_ :
gmx::DomainDecompositionBuilder::Impl
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