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- a -
acf :
autocorr.cpp
archsWithLargeRegisterPool :
device_management_hip.cpp
- b -
bACFinit :
autocorr.cpp
box1000 :
bench_coords.h
bWarnedGuess :
pbc.cpp
- c -
c_binarySupportsGpus :
device_information.h
c_bondedKernelFlavorStrings :
bonded.cpp
,
bonded.h
c_canSerializeDeviceInformation :
device_information.h
c_checkTurnDlbOffInterval :
dlb.h
c_checkTurnDlbOnInterval :
dlb.h
c_comBufferStride :
pull_internal.h
c_cudaFullWarpMask :
sycl_kernel_utils.h
c_cylinderBufferStride :
pull_internal.h
c_debugTimerState :
gpuregiontimer.h
c_deviceStateString :
device_information.h
c_gatherMaxWarpsPerBlock :
pme_gpu_constants.h
c_maxBufSize :
symtab.cpp
c_maxSpacingScaling :
pme_load_balancing.cpp
c_numFirstTuningIntervalSkip :
pme_load_balancing.cpp
c_numFirstTuningIntervalSkipWithSepPme :
pme_load_balancing.cpp
c_numPostSwitchTuningIntervalSkip :
pme_load_balancing.cpp
c_pbcTypeNames :
pbc.cpp
c_pmeAtomDataBlockSize :
pme_gpu_internal.cpp
c_pmeGpuOrder :
pme_gpu_constants.h
c_probabilityCutoff :
replicaexchange.cpp
c_pullGroupPbcMargin :
pull.h
c_pullGroupSmallGroupThreshold :
pull.h
c_pullMaxNumLocalAtomsSingleThreaded :
pull_internal.h
c_skipNeutralAtoms :
pme_gpu_constants.h
c_solveMaxWarpsPerBlock :
pme_gpu_constants.h
c_spreadMaxWarpsPerBlock :
pme_gpu_constants.h
c_startupTimeDelay :
pme_load_balancing.cpp
c_trimSize :
symtab.cpp
c_useDelayedWait :
pme_pp.cpp
c_virialAndEnergyCount :
pme_gpu_constants.h
ChannelString :
swapcoords.cpp
CompStr :
swapcoords.cpp
conrmsd_nm :
energyoutput.cpp
coordinates1000 :
bench_coords.h
- d -
debug :
fatalerror.h
DimStr :
swapcoords.cpp
DomainString :
swapcoords.cpp
- g -
g_threadAllocCount :
pmalloc_sycl.cpp
g_threadDefaultContext :
pmalloc_sycl.cpp
g_threadDelayContextClearing :
pmalloc_sycl.cpp
g_useEventConsumptionCounting :
gpueventsynchronizer.h
gmx_central_base_hash :
baseversion_gen.h
gmx_debug_at :
fatalerror.h
GMX_FFT_FLAG_CONSERVATIVE :
fft.h
GMX_FFT_FLAG_NONE :
fft.h
gmx_full_git_hash :
baseversion_gen.h
gmx_string_hash_init :
cstringutil.h
gmx_ver_string :
baseversion_gen.h
gmxCacheLineSize :
pme.cpp
gmxSourceDoiString :
baseversion_gen.h
gridpointsScaleFactor :
pme_load_balancing.cpp
- h -
help_atomname :
sm_simple.cpp
help_distance :
sm_distance.cpp
help_insolidangle :
sm_insolidangle.cpp
help_merge :
sm_merge.cpp
help_permute :
sm_permute.cpp
help_resindex :
sm_simple.cpp
help_same :
sm_same.cpp
helptitle_atomname :
sm_simple.cpp
helptitle_distance :
sm_distance.cpp
helptitle_merge :
sm_merge.cpp
helptitle_resindex :
sm_simple.cpp
- i -
IF_ATYPE :
ifunc.h
IF_BOND :
ifunc.h
IF_BTYPE :
ifunc.h
IF_LIMZERO :
ifunc.h
IF_NULL :
ifunc.h
interaction_function :
ifunc.cpp
,
ifunc.h
- l -
lb_scale_factor :
pme_internal.h
lb_scale_factor_symm :
pme_internal.h
Leg :
autocorr.cpp
lmcurves :
gmx_lmcurve.h
,
expfit.cpp
loadBalanceTriggerFactor :
pme_load_balancing.cpp
longs_ffn :
expfit.cpp
- m -
MAXATOMLIST :
ifunc.h
maxFluctuationAccepted :
pme_load_balancing.cpp
MAXFORCEPARAM :
ifunc.h
maxRelativeSlowdownAccepted :
pme_load_balancing.cpp
min_atoms_per_gpu :
resourcedivision.cpp
min_atoms_per_mpi_thread :
resourcedivision.cpp
- n -
nfp_ffn :
expfit.cpp
NR_RBDIHS :
ifunc.h
nthreads_omp_faster_default :
resourcedivision.cpp
- o -
OVER_ALLOC_FAC :
smalloc.h
- p -
PMETunePeriod :
pme_load_balancing.cpp
- r -
relativeEfficiencyFactor :
pme_load_balancing.cpp
- s -
s_ffn :
expfit.cpp
,
expfit.h
sc_boxSkewnessMarginForWarning :
pbc.cpp
sc_haveNbnxmSimd2xmmKernels :
nbnxm_simd.h
sc_haveNbnxmSimd4xmKernels :
nbnxm_simd.h
sc_numFepStates :
pme_gpu_staging.h
sc_numGridsLJLB :
pme_internal.h
sc_skewnessMargin :
pbc.cpp
sc_subGroupSize :
pme_gpu_grid_sycl.cpp
sm_all :
sm_simple.cpp
sm_altloc :
sm_simple.cpp
sm_atomname :
sm_simple.cpp
sm_atomnr :
sm_simple.cpp
sm_atomtype :
sm_simple.cpp
sm_betafactor :
sm_simple.cpp
sm_chain :
sm_simple.cpp
sm_charge :
sm_simple.cpp
sm_cog :
sm_position.cpp
sm_com :
sm_position.cpp
sm_compare :
keywords.h
,
sm_compare.cpp
sm_distance :
sm_distance.cpp
sm_insertcode :
sm_simple.cpp
sm_insolidangle :
sm_insolidangle.cpp
sm_keyword_int :
keywords.h
,
sm_keywords.cpp
sm_keyword_pos :
keywords.h
,
sm_position.cpp
sm_keyword_real :
keywords.h
,
sm_keywords.cpp
sm_keyword_str :
sm_keywords.cpp
,
keywords.h
sm_mass :
sm_simple.cpp
sm_merge :
sm_merge.cpp
sm_mindistance :
sm_distance.cpp
sm_molindex :
sm_simple.cpp
sm_none :
sm_simple.cpp
sm_occupancy :
sm_simple.cpp
sm_pdbatomname :
sm_simple.cpp
sm_permute :
sm_permute.cpp
sm_plus :
sm_merge.cpp
sm_resindex :
sm_simple.cpp
sm_resname :
sm_simple.cpp
sm_resnr :
sm_simple.cpp
sm_same :
sm_same.cpp
sm_same_str :
sm_same.cpp
sm_within :
sm_distance.cpp
sm_x :
sm_simple.cpp
sm_y :
sm_simple.cpp
sm_z :
sm_simple.cpp
smparams_com :
sm_position.cpp
smparams_compare :
sm_compare.cpp
smparams_distance :
sm_distance.cpp
smparams_insolidangle :
sm_insolidangle.cpp
smparams_keyword_int :
sm_keywords.cpp
smparams_keyword_pos :
sm_position.cpp
smparams_keyword_real :
sm_keywords.cpp
smparams_keyword_str :
sm_keywords.cpp
smparams_kweval_group :
sm_keywords.cpp
smparams_kweval_pos :
sm_keywords.cpp
smparams_merge :
sm_merge.cpp
smparams_mindistance :
sm_distance.cpp
smparams_permute :
sm_permute.cpp
smparams_same_int :
sm_same.cpp
smparams_same_str :
sm_same.cpp
smparams_within :
sm_distance.cpp
spc81Box :
spc81_coords.h
spc81Coordinates :
spc81_coords.h
SwapStr :
swapcoords.cpp
SwS :
swapcoords.cpp
SwSEmpty :
swapcoords.cpp
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