|
Gromacs
2026.0-dev-20251119-5f0a571d
|
All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Groups Pages
|
Gromacs
2026.0-dev-20251119-5f0a571d
|
#include "gmxpre.h"#include <cinttypes>#include <cmath>#include <cstdio>#include <cstdlib>#include <algorithm>#include <array>#include <filesystem>#include <memory>#include <vector>#include "gromacs/applied_forces/awh/awh.h"#include "gromacs/commandline/filenm.h"#include "gromacs/compat/pointers.h"#include "gromacs/domdec/collect.h"#include "gromacs/domdec/dlbtiming.h"#include "gromacs/domdec/domdec.h"#include "gromacs/domdec/domdec_network.h"#include "gromacs/domdec/domdec_struct.h"#include "gromacs/domdec/localtopologychecker.h"#include "gromacs/domdec/mdsetup.h"#include "gromacs/domdec/partition.h"#include "gromacs/essentialdynamics/edsam.h"#include "gromacs/ewald/pme_load_balancing.h"#include "gromacs/ewald/pme_pp.h"#include "gromacs/fileio/enxio.h"#include "gromacs/fileio/trxio.h"#include "gromacs/gmxlib/network.h"#include "gromacs/gmxlib/nrnb.h"#include "gromacs/gpu_utils/gpu_utils.h"#include "gromacs/gpu_utils/hostallocator.h"#include "gromacs/listed_forces/listed_forces.h"#include "gromacs/listed_forces/listed_forces_gpu.h"#include "gromacs/math/arrayrefwithpadding.h"#include "gromacs/math/functions.h"#include "gromacs/math/utilities.h"#include "gromacs/mdlib/checkpointhandler.h"#include "gromacs/mdlib/constr.h"#include "gromacs/mdlib/ebin.h"#include "gromacs/mdlib/enerdata_utils.h"#include "gromacs/mdlib/energyoutput.h"#include "gromacs/mdlib/expanded.h"#include "gromacs/mdlib/force.h"#include "gromacs/mdlib/force_flags.h"#include "gromacs/mdlib/forcerec.h"#include "gromacs/mdlib/freeenergyparameters.h"#include "gromacs/mdlib/md_support.h"#include "gromacs/mdlib/mdatoms.h"#include "gromacs/mdlib/mdoutf.h"#include "gromacs/mdlib/membed.h"#include "gromacs/mdlib/resethandler.h"#include "gromacs/mdlib/sighandler.h"#include "gromacs/mdlib/simulationsignal.h"#include "gromacs/mdlib/stat.h"#include "gromacs/mdlib/stophandler.h"#include "gromacs/mdlib/tgroup.h"#include "gromacs/mdlib/trajectory_writing.h"#include "gromacs/mdlib/update.h"#include "gromacs/mdlib/vcm.h"#include "gromacs/mdlib/vsite.h"#include "gromacs/mdrunutility/handlerestart.h"#include "gromacs/mdrunutility/multisim.h"#include "gromacs/mdrunutility/printtime.h"#include "gromacs/mdtypes/awh_history.h"#include "gromacs/mdtypes/awh_params.h"#include "gromacs/mdtypes/commrec.h"#include "gromacs/mdtypes/df_history.h"#include "gromacs/mdtypes/enerdata.h"#include "gromacs/mdtypes/energyhistory.h"#include "gromacs/mdtypes/forcebuffers.h"#include "gromacs/mdtypes/forcerec.h"#include "gromacs/mdtypes/group.h"#include "gromacs/mdtypes/inputrec.h"#include "gromacs/mdtypes/interaction_const.h"#include "gromacs/mdtypes/md_enums.h"#include "gromacs/mdtypes/mdatom.h"#include "gromacs/mdtypes/mdrunoptions.h"#include "gromacs/mdtypes/multipletimestepping.h"#include "gromacs/mdtypes/observableshistory.h"#include "gromacs/mdtypes/observablesreducer.h"#include "gromacs/mdtypes/simulation_workload.h"#include "gromacs/mdtypes/state.h"#include "gromacs/mimic/communicator.h"#include "gromacs/mimic/utilities.h"#include "gromacs/pbcutil/pbc.h"#include "gromacs/pulling/pull.h"#include "gromacs/taskassignment/include/gromacs/taskassignment/decidesimulationworkload.h"#include "gromacs/timing/wallcycle.h"#include "gromacs/timing/walltime_accounting.h"#include "gromacs/topology/atoms.h"#include "gromacs/topology/idef.h"#include "gromacs/topology/ifunc.h"#include "gromacs/topology/mtop_util.h"#include "gromacs/topology/topology.h"#include "gromacs/trajectory/trajectoryframe.h"#include "gromacs/utility/arrayref.h"#include "gromacs/utility/basedefinitions.h"#include "gromacs/utility/cstringutil.h"#include "gromacs/utility/enumerationhelpers.h"#include "gromacs/utility/fatalerror.h"#include "gromacs/utility/logger.h"#include "gromacs/utility/real.h"#include "gromacs/utility/vec.h"#include "gromacs/utility/vectypes.h"#include "legacysimulator.h"#include "replicaexchange.h"#include "shellfc.h"Declares the loop for MiMiC QM/MM.
1.8.5