gmx::test::anonymous_namespace{haloexchange_mpi.cpp} Namespace Reference

Functions
float	encodedValue (const int sendRank, const int atomNumber, const int spatial3dIndex)
	Get encoded numerical value for sending rank, atom number and spatial 3D index. More...
void	initHaloData (RVec *x, const int numHomeAtoms, const int numAtomsTotal)
	Initialize halo array. More...
void	gpuHalo (gmx_domdec_t *dd, matrix box, HostVector< RVec > *h_x, int numAtomsTotal)
	Perform GPU halo exchange, including required setup and data transfers. More...
void	define1dRankTopology (gmx_domdec_t *dd)
	Define 1D rank topology with 4 MPI tasks. More...
void	define2dRankTopology (gmx_domdec_t *dd)
	Define 2D rank topology with 4 MPI tasks. More...
void	define1dHaloWith1Pulse (gmx_domdec_t *dd, std::vector< gmx_domdec_ind_t > *indvec)
	Define a 1D halo with 1 pulses. More...
void	define1dHaloWith2Pulses (gmx_domdec_t *dd, std::vector< gmx_domdec_ind_t > *indvec)
	Define a 1D halo with 2 pulses. More...
void	define2dHaloWith1PulseInEachDim (gmx_domdec_t *dd, std::vector< gmx_domdec_ind_t > *indvec)
	Define a 2D halo with 1 pulse in each dimension. More...
void	define2dHaloWith2PulsesInDim1 (gmx_domdec_t *dd, std::vector< gmx_domdec_ind_t > *indvec)
	Define a 2D halo with 2 pulses in the first dimension. More...
void	checkResults1dHaloWith1Pulse (const RVec *x, const gmx_domdec_t *dd, const int numHomeAtoms)
	Check results for above-defined 1D halo with 1 pulse. More...
void	checkResults1dHaloWith2Pulses (const RVec *x, const gmx_domdec_t *dd, const int numHomeAtoms)
	Check results for above-defined 1D halo with 2 pulses. More...
void	checkResults2dHaloWith1PulseInEachDim (const RVec *x, const gmx_domdec_t *dd, const int numHomeAtoms)
	Check results for above-defined 2D halo with 1 pulse in each dimension. More...
void	checkResults2dHaloWith2PulsesInDim1 (const RVec *x, const gmx_domdec_t *dd, const int numHomeAtoms)
	Check results for above-defined 2D halo with 2 pulses in the first dimension. More...

Function Documentation

void gmx::test::anonymous_namespace{haloexchange_mpi.cpp}::checkResults1dHaloWith1Pulse	(	const RVec *	x,
		const gmx_domdec_t *	dd,
		const int	numHomeAtoms
	)

Check results for above-defined 1D halo with 1 pulse.

Parameters

[in]	x	Atom coordinate data array
[in]	dd	Domain decomposition object
[in]	numHomeAtoms	Number of home atoms

void gmx::test::anonymous_namespace{haloexchange_mpi.cpp}::checkResults1dHaloWith2Pulses	(	const RVec *	x,
		const gmx_domdec_t *	dd,
		const int	numHomeAtoms
	)

Check results for above-defined 1D halo with 2 pulses.

Parameters

[in]	x	Atom coordinate data array
[in]	dd	Domain decomposition object
[in]	numHomeAtoms	Number of home atoms

void gmx::test::anonymous_namespace{haloexchange_mpi.cpp}::checkResults2dHaloWith1PulseInEachDim	(	const RVec *	x,
		const gmx_domdec_t *	dd,
		const int	numHomeAtoms
	)

Check results for above-defined 2D halo with 1 pulse in each dimension.

Parameters

[in]	x	Atom coordinate data array
[in]	dd	Domain decomposition object
[in]	numHomeAtoms	Number of home atoms

void gmx::test::anonymous_namespace{haloexchange_mpi.cpp}::checkResults2dHaloWith2PulsesInDim1	(	const RVec *	x,
		const gmx_domdec_t *	dd,
		const int	numHomeAtoms
	)

Check results for above-defined 2D halo with 2 pulses in the first dimension.

Parameters

[in]	x	Atom coordinate data array
[in]	dd	Domain decomposition object
[in]	numHomeAtoms	Number of home atoms

void gmx::test::anonymous_namespace{haloexchange_mpi.cpp}::define1dHaloWith1Pulse	(	gmx_domdec_t *	dd,
		std::vector< gmx_domdec_ind_t > *	indvec
	)

Define a 1D halo with 1 pulses.

Parameters

[in]	dd	Domain decomposition object
[in]	indvec	Vector of index vectors

void gmx::test::anonymous_namespace{haloexchange_mpi.cpp}::define1dHaloWith2Pulses	(	gmx_domdec_t *	dd,
		std::vector< gmx_domdec_ind_t > *	indvec
	)

Define a 1D halo with 2 pulses.

Parameters

[in]	dd	Domain decomposition object
[in]	indvec	Vector of index vectors

void gmx::test::anonymous_namespace{haloexchange_mpi.cpp}::define1dRankTopology

(

gmx_domdec_t *

dd

)

Define 1D rank topology with 4 MPI tasks.

Parameters

[in]

dd

Domain decomposition object

void gmx::test::anonymous_namespace{haloexchange_mpi.cpp}::define2dHaloWith1PulseInEachDim	(	gmx_domdec_t *	dd,
		std::vector< gmx_domdec_ind_t > *	indvec
	)

Define a 2D halo with 1 pulse in each dimension.

Parameters

[in]	dd	Domain decomposition object
[in]	indvec	Vector of index vectors

void gmx::test::anonymous_namespace{haloexchange_mpi.cpp}::define2dHaloWith2PulsesInDim1	(	gmx_domdec_t *	dd,
		std::vector< gmx_domdec_ind_t > *	indvec
	)

Define a 2D halo with 2 pulses in the first dimension.

Parameters

[in]	dd	Domain decomposition object
[in]	indvec	Vector of index vectors

void gmx::test::anonymous_namespace{haloexchange_mpi.cpp}::define2dRankTopology

(

gmx_domdec_t *

dd

)

Define 2D rank topology with 4 MPI tasks.

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Parameters

[in]

dd

Domain decomposition object

float gmx::test::anonymous_namespace{haloexchange_mpi.cpp}::encodedValue	(	const int	sendRank,
		const int	atomNumber,
		const int	spatial3dIndex
	)

Get encoded numerical value for sending rank, atom number and spatial 3D index.

Parameters

[in]	sendRank	MPI rank of sender
[in]	atomNumber	Atom number
[in]	spatial3dIndex	Spatial 3D Index

Returns

Encoded value

void gmx::test::anonymous_namespace{haloexchange_mpi.cpp}::gpuHalo	(	gmx_domdec_t *	dd,
		matrix	box,
		HostVector< RVec > *	h_x,
		int	numAtomsTotal
	)

Perform GPU halo exchange, including required setup and data transfers.

Parameters

[in]	dd	Domain decomposition object
[in]	box	Box matrix
[in]	h_x	Atom coordinate data array on host
[in]	numAtomsTotal	Total number of atoms, including halo

void gmx::test::anonymous_namespace{haloexchange_mpi.cpp}::initHaloData	(	RVec *	x,
		const int	numHomeAtoms,
		const int	numAtomsTotal
	)

Initialize halo array.

Parameters

[in]	x	Atom coordinate data array
[in]	numHomeAtoms	Number of home atoms
[in]	numAtomsTotal	Total number of atoms, including halo