- c -

• c_avoidFloatingPointAtomics() : gmx
• c_waterPositions() : gmx::test
• calc_bounding_box() : gmx
• calc_dist_iter() : gmx
• calc_listed() : anonymous_namespace{listed_forces.cpp}
• calc_listed_lambda() : anonymous_namespace{listed_forces.cpp}
• calc_one_bond() : anonymous_namespace{listed_forces.cpp}
• calc_radius() : anonymous_namespace{edsam.cpp}
• calc_shmem_required_nonbonded() : gmx
• calc_shmem_required_prune() : gmx
• calc_vec() : gmx::analysismodules::anonymous_namespace{angle.cpp}
• calcAverageDisplacement() : gmx::analysismodules::anonymous_namespace{msd.cpp}
• calcBoundingBoxHalves() : gmx
• calcBoundingBoxXPacked() : gmx
• calcCheckCoveringInterval() : gmx::anonymous_namespace{biasparams.cpp}
• calcPruneVerletBufferSize() : gmx
• calcSingleSquaredDistance() : gmx::analysismodules::anonymous_namespace{msd.cpp}
• calcTargetUpdateInterval() : gmx::anonymous_namespace{biasparams.cpp}
• calculateAcceptanceWeight() : gmx
• calculateCOM() : gmx::anonymous_namespace{com.cpp}
• calculateCubicSplineCoefficients() : gmx::anonymous_namespace{cubicsplinetable.cpp}
• calculateFELambdaMarginalDistribution() : gmx::anonymous_namespace{biasstate.cpp}
• calculateLJEwaldC6Grid() : gmx
• calculateUlpDifference() : gmx::test::anonymous_namespace{testasserts.cpp}
• canSkipNonbondedWork() : gmx
• canTreatPRScalingMatrixAsDiagonal() : gmx
• castOrNull() : gmx
• cbrt() : gmx
• centerTypeNames() : gmx
• changePinningPolicy() : gmx
• charArrayRefFromArray() : gmx::test
• check_assign_connected() : gmx
• check_assign_triangle() : gmx
• check_cons() : gmx
• check_grid_jump() : gmx
• checkAllPairsFound() : anonymous_namespace{nbsearch.cpp}
• checkAppend() : gmx::test::anonymous_namespace{listoflists.cpp}
• checkAwhParams() : gmx
• checkBiasParams() : gmx::anonymous_namespace{read_params.cpp}
• checkBoxAgainstReference() : gmx::test
• checkConfFile() : gmx::test
• checkCore() : gmx::test::anonymous_namespace{mockhardwaretopology.cpp}
• checkCustomVector() : gmx::test::anonymous_namespace{refdata_tests.cpp}
• checkDeviceError() : gmx
• checkDimParams() : gmx::anonymous_namespace{read_params.cpp}
• checkDoesNotFind() : gmx::test::anonymous_namespace{hashedmap.cpp}
• checkEnergiesAgainstReferenceData() : gmx::test
• checkEqualCaseInsensitive() : gmx::test::anonymous_namespace{stringutil.cpp}
• checkExternalGroups() : gmx::anonymous_namespace{selectioncollection.cpp}
• checkFepLambdaDimDecouplingConsistency() : gmx::anonymous_namespace{read_params.cpp}
• checkFepLambdaDimParams() : gmx::anonymous_namespace{read_params.cpp}
• checkFinds() : gmx::test::anonymous_namespace{hashedmap.cpp}
• checkForcesAgainstReference() : gmx::test
• checkForUnknownOptionsInKeyValueTree() : gmx
• checkFrame() : gmx::test::anonymous_namespace{mock_datamodule.cpp}
• checkGpu() : gmx
• checkHardwareOversubscription() : gmx
• checkHeader() : gmx::test::anonymous_namespace{mock_datamodule.cpp}
• checkIfRandomDeviceIsFunctional() : gmx
• checkInputConsistencyAwh() : gmx::anonymous_namespace{read_params.cpp}
• checkInputConsistencyAwhBias() : gmx::anonymous_namespace{read_params.cpp}
• checkInputConsistencyInterval() : gmx
• checkKernelSetup() : gmx
• checkLogicalProcessor() : gmx::test::anonymous_namespace{mockhardwaretopology.cpp}
• checkMachine() : gmx::test::anonymous_namespace{mockhardwaretopology.cpp}
• checkMap() : gmx::test::anonymous_namespace{mockhardwaretopology.cpp}
• checkMatrix() : gmx::test::anonymous_namespace{xvgio.cpp}
• checkMpiCudaAwareSupport() : gmx
• checkMpiHipAwareSupport() : gmx
• checkMpiZEAwareSupport() : gmx
• checkMtsConsistency() : gmx::anonymous_namespace{read_params.cpp}
• checkMtsInterval() : gmx::anonymous_namespace{multipletimestepping.cpp}
• checkMtsRequirements() : gmx
• checkOutput() : gmx::test::anonymous_namespace{nb_free_energy.cpp} , gmx::test::anonymous_namespace{bonded.cpp} , gmx::test::anonymous_namespace{pairs.cpp}
• checkOutputFile() : gmx::anonymous_namespace{handlerestart.cpp}
• checkPackage() : gmx::test::anonymous_namespace{mockhardwaretopology.cpp}
• checkPoints() : gmx::test::anonymous_namespace{mock_datamodule.cpp}
• checkpointVersion() : gmx
• checkPositionsAgainstReference() : gmx::test
• checkPotentialEnergyValidity() : gmx
• checkProcessingUnit() : gmx::test::anonymous_namespace{mockhardwaretopology.cpp}
• checkPullDimParams() : gmx::anonymous_namespace{read_params.cpp}
• checkRealGrid() : gmx::test::anonymous_namespace{fft.cpp} , gmx::test
• checkReferenceDataPoint() : gmx::test::anonymous_namespace{mock_datamodule.cpp}
• checkResults1dHaloWith1Pulse() : gmx::test::anonymous_namespace{haloexchange_mpi.cpp}
• checkResults1dHaloWith2Pulses() : gmx::test::anonymous_namespace{haloexchange_mpi.cpp}
• checkResults2dHaloWith1PulseInEachDim() : gmx::test::anonymous_namespace{haloexchange_mpi.cpp}
• checkResults2dHaloWith2PulsesInDim1() : gmx::test::anonymous_namespace{haloexchange_mpi.cpp}
• checkRotForcesAtStepZero() : gmx::test::anonymous_namespace{pull_rotation.cpp}
• checkSelections() : gmx::analysismodules::anonymous_namespace{distance.cpp}
• checkTestNameLength() : gmx::test
• checkTopologyProperties() : gmx::anonymous_namespace{selectioncollection.cpp}
• checkTrajectoryAgainstReferenceData() : gmx::test
• checkUnusedEntries() : gmx::test::anonymous_namespace{refdata.cpp}
• checkUseModularSimulator() : gmx
• checkUserGpuIds() : gmx
• checkVelocitiesAgainstReference() : gmx::test
• checkXvgDataPoint() : gmx::test::anonymous_namespace{msd.cpp} , gmx::test::anonymous_namespace{xvgtest.cpp}
• checkXvgFile() : gmx::test
• chooseAndLaunchNbnxmKernel() : gmx
• chooseAndLaunchNbnxmKernelPruneOnly() : gmx
• chooseLJCombinationRule() : gmx
• chooseLJPmeCombinationRule() : gmx , gmx::test::anonymous_namespace{kernel_test.cpp}
• chooseStartingBehavior() : gmx::anonymous_namespace{handlerestart.cpp}
• cjFromCi() : gmx
• clear_constraint_quantity_nonlocal() : gmx
• clear_fshift() : gmx
• clearBufferAll() : gmx
• clearBufferFlagged() : gmx
• clearTaskForceBufferUsedElements() : gmx
• closeLogFile() : gmx
• closestIntegerPoint() : gmx::anonymous_namespace{gausstransform.cpp}
• clusterBoundingBoxDistance2() : gmx
• cmap_setup_grid_index() : anonymous_namespace{bonded.cpp}
• colvarsMdpTransformFromString() : gmx::anonymous_namespace{colvarsoptions.cpp}
• combine_bounding_box_pairs() : gmx
• combineLJParams() : gmx::test::anonymous_namespace{testsystem.cpp}
• combineMtsForces() : gmx
• compareBox() : gmx::test
• compareCoordinates() : gmx::test
• compareDifferentHandles() : gmx::test::anonymous_namespace{symtab.cpp}
• compareDifferentIndices() : gmx::test
• compareForces() : gmx::test
• compareFrames() : gmx::test
• compareKeyValueTrees() : gmx
• compareLists() : gmx::test::anonymous_namespace{listoflists.cpp}
• compareSymtabLookupAndHandle() : gmx::test::anonymous_namespace{symtab.cpp}
• compareVelocities() : gmx::test
• compareViews() : gmx::test
• compareViewsIgnoreConst() : gmx::test
• compileSelection() : gmx
• computeAreas() : gmx::analysismodules::anonymous_namespace{sasa.cpp}
• computeBoundingBox() : gmx::anonymous_namespace{nbsearch.cpp}
• computeDerivativeForTransformationPullCoord() : gmx
• computeDisplacements() : gmx::test::anonymous_namespace{shake.cpp} , gmx::anonymous_namespace{findallgputasks.cpp}
• computeDistancesSquared() : gmx::test::anonymous_namespace{shake.cpp}
• computeExpectedNumGlobalBondedInteractions() : gmx
• computeFepPeriod() : gmx
• computeForceSwitchVariables() : gmx
• computeHalfOfReducedMasses() : gmx::test::anonymous_namespace{shake.cpp}
• computeMassesAndCharges() : gmx::internal::anonymous_namespace{selection.cpp}
• computeMaxUpdateGroupRadius() : gmx
• computePaddedSize() : gmx::detail
• computePotentialSwitchVariables() : gmx
• computeQMBoxVec() : gmx
• computeSpecialForces() : gmx
• computeTotalSize() : gmx
• concatenateBeforeExtension() : gmx
• connolly_plot() : gmx::analysismodules::anonymous_namespace{sasa.cpp}
• constr_iatomptr() : gmx
• constr_r_max() : gmx
• constr_r_max_moltype() : gmx
• constr_recur() : gmx
• constrain_coordinates() : gmx
• constrain_lincs() : gmx
• constrain_shake() : gmx
• constrain_velocities() : gmx
• constraintAtomRange() : gmx
• constraintGroupRadius() : gmx
• construct_vsites() : gmx
• construct_vsites_thread() : gmx
• constructVirtualSites() : gmx
• constructVirtualSitesGlobal() : gmx
• contains() : gmx
• convertDoubleReferenceValue() : gmx::test
• convertFlag() : gmx
• convertFromStringArrayRef() : gmx::test::anonymous_namespace{cmdlinetest.cpp}
• convertIlistToNbnxnOrder() : gmx
• convertLJCombinationRule() : gmx
• convertParameters() : gmx::anonymous_namespace{electricfield.cpp}
• convertRVecToFloat3OnDevice() : gmx::test
• convertRVecToFloat3OnDevice_kernel() : gmx::test
• convertRVecToFloat3OnHost() : gmx::test
• convertSigmaEpsilonToC6C12() : gmx
• convertToCheckpointSignal() : gmx
• convertToResetSignal() : gmx
• convertToStopSignal() : gmx
• coordinates() : gmx::test::anonymous_namespace{mshift.cpp}
• coordinatesWhole() : gmx::test::anonymous_namespace{mshift.cpp}
• copy_rvec_to_nbat_real() : gmx
• copyOf() : gmx
• copyRVecToNbatPackedReal() : gmx
• copysign() : gmx
• cornerToBoundingBoxDistance() : gmx::anonymous_namespace{domainpaircomm.cpp}
• cornerToBoundingBoxDistanceRectangular() : gmx::anonymous_namespace{domainpaircomm.cpp}
• cornerToBoundingBoxDistanceTrilinic() : gmx::anonymous_namespace{domainpaircomm.cpp}
• cos() : gmx
• cosSingleAccuracy() : gmx
• coulombDerivative() : gmx::test::anonymous_namespace{splinetable.cpp}
• coulombFunction() : gmx::test::anonymous_namespace{splinetable.cpp}
• coulombInteractionType() : gmx::test::anonymous_namespace{kernel_test.cpp}
• count_triangle_constraints() : gmx
• countAndSortExclusions() : gmx::anonymous_namespace{exclusionblocks.cpp}
• countFlexibleConstraints() : gmx
• countGpuTasksOnThisNode() : gmx::anonymous_namespace{taskassignment.cpp}
• countInterUpdategroupVsites() : gmx
• countLeadingSpace() : gmx::anonymous_namespace{rstparser.cpp}
• countNonlinearVsites() : gmx
• countOverAllRanks() : gmx::anonymous_namespace{taskassignment.cpp}
• countPruneKernelTime() : gmx
• countSamples() : gmx
• countTrailingZeroRows() : gmx
• countUniqueGpuIdsUsed() : gmx::anonymous_namespace{reportgpuusage.cpp}
• countWords() : gmx
• cpuIsAmdZen1() : gmx
• cpuIsX86Nehalem() : gmx
• crattle() : gmx
• create_unique_with_deleter() : gmx
• createElectricFieldModule() : gmx
• createEntry() : gmx::test::anonymous_namespace{refdata_xml.cpp}
• createEnumOptionStorage() : gmx::internal
• createGroup() : gmx
• createInteractiveMolecularDynamicsModule() : gmx
• createMatrix3x3FromLegacyMatrix() : gmx
• createMinimalTrajectoryFrameWriter() : gmx::test
• createSelectionHelpTopic() : gmx
• createSimulationWorkload() : gmx
• createSwapCoordinatesModule() : gmx
• createTrajectoryFrameWriter() : gmx
• createTwoResidueTopology() : gmx::test::anonymous_namespace{mtop.cpp}
• cross() : gmx
• csettle() : gmx
• cshake() : gmx
• cubicSplineInterpolationFromFunctionAndDerivative() : gmx::anonymous_namespace{cubicsplinetable.cpp}
• cuda_set_cacheconfig() : gmx
• current_function_helper() : gmx::internal
• currentGlobalLambda() : gmx::anonymous_namespace{freeenergyparameters.cpp}
• currentLambdas() : gmx
• cvtB2IB() : gmx
• cvtD2F() : gmx
• cvtDD2F() : gmx
• cvtF2D() : gmx
• cvtF2DD() : gmx
• cvtI2R() : gmx
• cvtIB2B() : gmx
• cvtR2I() : gmx
• cvttR2I() : gmx