| df_history_t | IListProxy | not_null (gmx::compat) | SimdDInt32Tag (gmx) |
DiagonalMasker (gmx) | IListRange | NoTextMatch (gmx::test) | SimdDouble (gmx) |
AbstractAnalysisArrayData (gmx) | DiagonalMasker< nR, kernelLayout, KernelLayoutClusterRatio::JSizeEqualsISize > (gmx) | ILogTarget (gmx) | NotImplementedError (gmx) | SimdDoubleTag (gmx) |
AbstractAnalysisData (gmx) | DiagonalMasker< nR, kernelLayout, KernelLayoutClusterRatio::JSizeIsDoubleISize > (gmx) | IMDModule (gmx) | HardwareTopology::Numa (gmx) | SimdFBool (gmx) |
AbstractAverageHistogram (gmx) | DiagonalMasker< nR, kernelLayout, KernelLayoutClusterRatio::JSizeIsHalfISize > (gmx) | IMDOutputProvider (gmx) | HardwareTopology::NumaNode (gmx) | SimdFIBool (gmx) |
AbstractCompositeHelpTopic (gmx) | Grid::Dimensions (Nbnxm) | IMdpOptionProvider (gmx) | NumericalSplineTableInput (gmx) | SimdFInt32 (gmx) |
AbstractOption (gmx) | DirectoryEnumerator (gmx) | InconsistentInputError (gmx) | NumPmeDomains | SimdFInt32Tag (gmx) |
AbstractOptionSection (gmx) | DomainDecompositionBuilder (gmx) | IndexGroup |
| SimdFloat (gmx) |
AbstractOptionSectionHandle (gmx) | DomainLifetimeWorkload (gmx) | InstallationPrefixInfo (gmx) | SimdFloatTag (gmx) |
AbstractOptionStorage (gmx) | DomdecOptions (gmx) | Int64Option (gmx) | ObservablesHistory | SimdSetZeroProxy (gmx) |
AbstractPlotModule (gmx) | DoubleOption (gmx) | Int64OptionInfo (gmx) | ObservablesReducer (gmx) | SimdTraits (gmx::internal) |
AbstractSimpleHelpTopic (gmx) | DoubleOptionInfo (gmx) | IntegerOption (gmx) | ObservablesReducerBuilder (gmx) | SimpleHelpTopic (gmx) |
accessor_basic (gmx) |
| IntegerOptionInfo (gmx) | OpenClTraits (gmx) | SimulationAlgorithmSetupError (gmx) |
AffineTransformation (gmx) | InteractionDefinitions | OpenClTraits< cl_command_queue > (gmx) | SimulationContext (gmx) |
KeyValueTreeTransformRuleBuilder::AfterFrom (gmx) | EdrOutputFilename (gmx) | InteractionList | OpenClTraits< cl_context > (gmx) | SimulationGroups |
AlignedAllocationPolicy (gmx) | ekinstate_t | InteractionListHandle | OpenClTraits< cl_kernel > (gmx) | SimulationInputHandle |
AlignedArray< double, N > (gmx) | ElementNotFoundError (gmx) | InteractionOfType | OpenClTraits< cl_program > (gmx) | SimulationInstabilityError (gmx) |
AlignedArray< float, N > (gmx) | EnergyAccumulator (gmx) | InteractionsOfType | OpenClTraitsBase (gmx) | SimulationParticle |
Allocator (gmx) | EnergyAccumulator< false, true > (gmx) | InteractiveMD (gmx) | OptionInfo (gmx) | SimulationSignal (gmx) |
AllocatorTest (gmx::test) | EnergyAccumulator< true, true > (gmx) | InteractiveTestHelper (gmx::test) | OptionManagerContainer (gmx) | SimulationSignaller (gmx) |
AmdPackedFloat3 | EnergyAccumulator< useEnergyGroups, false > (gmx) | InternalError (gmx) | Options (gmx) | SimulationTimeStep (gmx) |
AnalysisArrayData (gmx) | EnergyAnalysisFrame (gmx) | InvalidInputError (gmx) | OptionsAssigner (gmx) | SimulationWorkload (gmx) |
AnalysisData (gmx) | EnergyCalculationFrequencyErrors (gmx) | IonSwapping (gmx) | OptionsBehaviorCollection (gmx) | SimulatorBuilder (gmx) |
AnalysisDataAverageModule (gmx) | EnergyFunctionProperties (Nbnxm) | IOptionManager (gmx) | OptionSection (gmx) | SimulatorConfig (gmx) |
AnalysisDataBinAverageModule (gmx) | EnergyGroupsPerCluster (gmx) | IOptionsBehavior (gmx) | OptionSectionHandle (gmx) | SimulatorEnv (gmx) |
AnalysisDataDisplacementModule (gmx) | EnergyNameUnit (gmx) | IOptionsContainer (gmx) | OptionsIterator (gmx) | SimulatorStateData (gmx) |
AnalysisDataFrameAverageModule (gmx) | EnergyTerm (gmx) | IOptionsContainerWithSections (gmx) | OptionsModifyingIterator (gmx) | Site (gmx) |
AnalysisDataFrameHeader (gmx) | EnsembleTemperature (gmx) | IOutputAdapter (gmx) | OptionsModifyingTypeVisitor (gmx) | StandardInputStream (gmx) |
AnalysisDataFrameRef (gmx) | gmx_ga2la_t::Entry | IProgramContext (gmx) | OptionsModifyingVisitor (gmx) | StaticLog2 (gmx) |
AnalysisDataHandle (gmx) | EnumerationArray (gmx) | IRestraintPotential (gmx) | OptionStorageTemplate (gmx) | StaticLog2< 0 > (gmx) |
AnalysisDataLifetimeModule (gmx) | EnumerationIterator (gmx) | ISerializer (gmx) | OptionStorageTemplateSimple (gmx) | StaticLog2< 1 > (gmx) |
AnalysisDataModuleManager (gmx) | EnumerationWrapper (gmx) | isIntegralConstant (gmx) | OptionsTypeVisitor (gmx) | StdioTestHelper (gmx::test) |
AnalysisDataModuleParallel (gmx) | EnumOption (gmx) | IsSerializableEnum (gmx) | OptionsVisitor (gmx) | StepWorkload (gmx) |
AnalysisDataModuleSerial (gmx) | EnumOptionInfo (gmx) | Range::iterator (gmx) | OptionTemplate (gmx) | StopConditionSignal (gmx) |
AnalysisDataParallelOptions (gmx) | EqualCaseInsensitive (gmx) | ITextBlockMatcher (gmx::test) | OptionValueConverterSimple (gmx) | StopConditionTime (gmx) |
AnalysisDataPlotModule (gmx) | EwaldBoxZScaler | ITextBlockMatcherSettings (gmx::test) | OutputAdapterContainer (gmx) | StopHandler (gmx) |
AnalysisDataPlotSettings (gmx) | ExactTextMatch (gmx::test) | ITopologyProvider (gmx) | OutputRequirementOptionDirector (gmx) | StopHandlerBuilder (gmx) |
AnalysisDataPointSetRef (gmx) | ExceptionInfo (gmx) |
| OutputRequirements (gmx) | StringCompare (gmx) |
AnalysisDataSimpleHistogramModule (gmx) | ExceptionInitializer (gmx) | OutputSelector (gmx) | StringFormatter (gmx) |
AnalysisDataStorage (gmx) | ExclusionBlock (gmx) | JClusterList | OutputSelectorDeathTest (gmx::test) | StringInputStream (gmx) |
AnalysisDataStorageFrame (gmx) | ExponentialDistribution (gmx) |
|
| StringOption (gmx) |
AnalysisDataTestFixture (gmx::test) | ExponentialMovingAverage (gmx) | StringOptionInfo (gmx) |
AnalysisDataTestInput (gmx::test) | ExponentialMovingAverageState (gmx) | KeyValueTreeBuilder (gmx) | HardwareTopology::Package (gmx) | StringOutputStream (gmx) |
AnalysisDataTestInputFrame (gmx::test) | extents (gmx) | KeyValueTreeObjectArrayBuilder (gmx) | PackedJClusterList | StringTable |
AnalysisDataTestInputPointSet (gmx::test) | extents_analyse< 0 > (gmx::detail) | KeyValueTreeObjectBuilder (gmx) | PaddedVector (gmx) | StringTableBuilder |
AnalysisDataValue (gmx) | extents_analyse< R, dynamic_extent, StaticExtents...> (gmx::detail) | KeyValueTreePath (gmx) | PaddingTraits (gmx::detail) | StringTableEntry |
AnalysisDataVectorPlotModule (gmx) | extents_analyse< R, E0, StaticExtents...> (gmx::detail) | KeyValueTreeTransformRuleBuilder (gmx) | PageAlignedAllocationPolicy (gmx) | StringTestBase (gmx::test) |
AnalysisDataWeightedHistogramModule (gmx) |
| KeyValueTreeTransformRulesScoped (gmx) | PairlistSets | StringToEnumValueConverter (gmx) |
AnalysisHistogramSettings (gmx) | KeyValueTreeUniformArrayBuilder (gmx) | PairSearch | SystemMomenta |
AnalysisHistogramSettingsInitializer (gmx) | FEPStateValue | KeyValueTreeValueBuilder (gmx) | PairsearchWork | SystemMomentum |
AnalysisNeighborhood (gmx) | FileIOError (gmx) |
| ParallelConsistencyError (gmx) |
|
AnalysisNeighborhoodPair (gmx) | FileNameOption (gmx) | UniformRealDistribution::param_type (gmx) |
AnalysisNeighborhoodPairSearch (gmx) | FileNameOptionInfo (gmx) | layout_right (gmx) | UniformIntDistribution::param_type (gmx) | t_filenm |
AnalysisNeighborhoodPositions (gmx) | FileNameOptionManager (gmx) | LegacyEnumOption (gmx) | TabulatedNormalDistribution::param_type (gmx) | t_idef |
AnalysisNeighborhoodSearch (gmx) | FilteringExactTextMatch (gmx::test) | LegacyInput (gmx) | NormalDistribution::param_type (gmx) | t_ilist |
AnalyticalSplineTableInput (gmx) | FixedCapacityVector (gmx) | LegacyMdrunOptions (gmx) | GammaDistribution::param_type (gmx) | t_interaction_function |
Any (gmx) | FlagsTemplate (gmx) | LennardJonesCalculator (gmx) | ExponentialDistribution::param_type (gmx) | t_iparams |
AnyOutputSupportedFiles (gmx::test) | FlagTest (gmx::test) | LennardJonesCalculator< calculateEnergies, InteractionModifiers::ForceSwitch > (gmx) | PartialDeserializedTprFile | t_mapping |
APIError (gmx) | FloatingPointDifference (gmx::test) | LennardJonesCalculator< calculateEnergies, InteractionModifiers::PotSwitch > (gmx) | PbcAiuc | t_matrix |
ArrayRef (gmx) | FloatingPointTolerance (gmx::test) | LennardJonesCalculator< false, InteractionModifiers::PotShift > (gmx) | PdbAtomEntry | t_mdatoms |
ArrayRefWithPadding (gmx) | FloatOption (gmx) | LennardJonesCalculator< true, InteractionModifiers::PotShift > (gmx) | PhysicalNodeCommunicator (gmx) | t_oriresdata |
AtomIterator | FloatOptionInfo (gmx) | ListedForces | PmeForceSenderGpu (gmx) | t_pargs |
AtomPair (gmx) | ForceBuffers (gmx) | ListOfLists (gmx) | PmeGpuProgram | t_pbc |
AtomProperties | ForceBuffersView (gmx) | LocalAtomSet (gmx) | PmePpCommGpu (gmx) | t_state |
AtomProxy | ForceHelperBuffers | LocalAtomSetManager (gmx) | PmeSolve | t_symbuf |
AtomRange | ForceOutputs (gmx) | LocalSettleData | GaussianSpreadKernelParameters::PositionAndAmplitude (gmx) | t_xpmelmt |
AtomsAdjacencyListElement | ForceProviderInput (gmx) | LocalTopologyChecker (gmx) | PotentialPointData (gmx) | TabulatedNormalDistribution (gmx) |
Awh (gmx) | ForceProviderOutput (gmx) | LogEntryWriter (gmx) | PpRanks | TestException (gmx::test) |
| ForceProviders (gmx) | LoggerBuilder (gmx) | PreprocessingAtomTypes | TestFileInputRedirector (gmx::test) |
ForceWithShiftForces (gmx) | LoggerOwner (gmx) | PreprocessingBondAtomType | TestFileManager (gmx::test) |
BalanceRegion | ForceWithVirial (gmx) | LoggerTestHelper (gmx::test) | PreprocessResidue | TestFileOutputRedirector (gmx::test) |
basic_mdspan (gmx) | ForeignLambdaTerms | HardwareTopology::LogicalProcessor (gmx) | ProcessFrameConversion (gmx) | TestOptionsProvider (gmx::test) |
BasicVector (gmx) |
| CpuInfo::LogicalProcessor (gmx) | HardwareTopology::ProcessingUnit (gmx) | TestReferenceChecker (gmx::test) |
BenchmarkSystem (gmx) | LogLevelHelper (gmx) | Profiling (gmx) | TestReferenceData (gmx::test) |
BinaryInformationSettings (gmx) | GammaDistribution (gmx) |
| PullCoordExpressionParser (gmx) | TestSystem (gmx::test) |
BondedInteraction | GaussianSpreadKernelParameters (gmx) |
| TextFileMatch (gmx::test) |
BondedInteractionList | GaussTransform3D (gmx) | HardwareTopology::Machine (gmx) | TextInputFile (gmx) |
BooleanOption (gmx) | GlobalCommandLineHelpContext (gmx) | MappedUnionFinder (gmx) | QMInputFileName (gmx) | TextInputStream (gmx) |
BooleanOptionInfo (gmx) | gmx_ana_index_t | layout_right::mapping (gmx) | QuadraticSplineTable (gmx) | TextLineWrapper (gmx) |
BoolType (gmx) | gmx_ana_indexmap_t | MDAtoms (gmx) |
| TextLineWrapperSettings (gmx) |
BoxDeformationHandle (gmx) | gmx_ana_pos_t | MDLogger (gmx) | TextOutputFile (gmx) |
BuildMDModulesNotifier< CurrentCallParameter, CallParameter...> (gmx) | gmx_cache_protect_t | MDModules (gmx) | Range (gmx) | TextOutputStream (gmx) |
| gmx_cmap_t | MDModulesAtomsRedistributedSignal (gmx) | RangeError (gmx) | TextReader (gmx) |
gmx_cmapdata_t | MDModulesCheckpointReadingBroadcast (gmx) | RangePartitioning (gmx) | TextTableFormatter (gmx) |
HardwareTopology::Cache (gmx) | gmx_domdec_constraints_t | MDModulesCheckpointReadingDataOnMain (gmx) | ReadCheckpointDataHolder (gmx) | TextWriter (gmx) |
CheckpointData (gmx) | gmx_enerdata_t | MDModulesEnergyOutputToDensityFittingRequestChecker (gmx) | RepeatingOptionSection (gmx) | ThreeFry2x64 (gmx) |
CheckpointError (gmx) | gmx_ffparams_t | MDModulesEnergyOutputToQMMMRequestChecker (gmx) | RepeatingOptionSectionHandle (gmx) | ThreeFry2x64Fast (gmx) |
CheckpointHandler (gmx) | gmx_ga2la_t | MDModulesNotifier (gmx) | ReplicaExchangeParameters | ThreeFry2x64General (gmx) |
CheckpointHeaderContents | gmx_localtop_t | MDModulesNotifiers (gmx) | ResetHandler (gmx) | TimeUnitBehavior (gmx) |
ClfftInitializer (gmx) | gmx_molblock_t | MDModulesWriteCheckpointData (gmx) | RestraintManager (gmx) | TimeUnitManager (gmx) |
ClHandle (gmx) | gmx_moltype_t | MdRunInputFilename (gmx) | RestraintMDModule (gmx) | ToleranceError (gmx) |
CommandLine (gmx::test) | gmx_multisim_t | Mdrunner (gmx) |
| KeyValueTreeTransformRuleBuilder::ToObject (gmx) |
CommandLineHelpContext (gmx) | gmx_nodecomm_t | MdrunnerBuilder (gmx) | TopologyData (gmx) |
CommandLineHelpWriter (gmx) | gmx_sparsematrix | MembedHolder (gmx) | Selection (gmx) | TopologyInformation (gmx) |
CommandLineModuleGroup (gmx) | GpuHaloExchange (gmx) | MessageStringCollector (gmx) | SelectionCollection (gmx) | KeyValueTreeTransformRuleBuilder::ToValue (gmx) |
CommandLineModuleManager (gmx) | GpuRegionTimerImpl | MessageStringContext (gmx) | SelectionFileOption (gmx) | TprAndFileManager (gmx::test) |
CommandLineModuleSettings (gmx) | GpuRegionTimerWrapper | MissingElementConnectionError (gmx) | SelectionFileOptionInfo (gmx) | TpxFileHeader |
CommandLineParser (gmx) | GpuTaskAssignments (gmx) | ModularSimulator (gmx) | SelectionOption (gmx) | TrajectoryAnalysisCommandLineRunner (gmx) |
CommandLineProgramContext (gmx) | GpuTaskAssignmentsBuilder (gmx) | ModularSimulatorError (gmx) | SelectionOptionBehavior (gmx) | TrajectoryAnalysisModule (gmx) |
CommandLineTestBase (gmx::test) | GpuTaskMapping (gmx) | ModuleSelection (gmx::test) | SelectionOptionInfo (gmx) | TrajectoryAnalysisModuleData (gmx) |
CommandLineTestHelper (gmx::test) | GromacsException (gmx) | ModuleTest (gmx::test) | SelectionOptionManager (gmx) | TrajectoryAnalysisSettings (gmx) |
CompositeHelpTopic (gmx) | GromppMtsOpts (gmx) | MoleculeBlockIndices | SelectionPosition (gmx) | TrajectoryFileOpener (gmx) |
ConfMatch (gmx::test) |
| MoleculeInformation | SelectionTopologyProperties (gmx) | TrajectoryFrameWriter (gmx) |
Constraints (gmx) | MoleculePatch | SeparatePmeRanksPermitted (gmx) | TranslateAndScale (gmx) |
ConstraintsParam (gmx) | HardwareTopology (gmx) | MoleculePatchDatabase | SetAtoms (gmx) |
|
ConvertTprInfo (gmx) | HashedMap (gmx) | MrcDataStatistics (gmx) | SetAtomsSupportedFiles (gmx::test) |
CoordinatesAndBoxPreprocessed (gmx) | HelpLinks (gmx) | MrcDensityMapHeader (gmx) | SetAtomsUnSupportedFiles (gmx::test) | UniformIntDistribution (gmx) |
HardwareTopology::Core (gmx) | HelpManager (gmx) | MrcDensityMapOfFloatFromFileReader (gmx) | SetBox (gmx) | UniformRealDistribution (gmx) |
CoulombCalculator (gmx) | HelpWriterContext (gmx) | MrcDensityMapOfFloatReader (gmx) | SetForces (gmx) | UnionFinder (gmx) |
CoulombCalculator< KernelCoulombType::EwaldAnalytical > (gmx) | history_t | MrcDensityMapOfFloatWriter (gmx) | SetForceSupportedFiles (gmx::test) | Update (gmx) |
CoulombCalculator< KernelCoulombType::EwaldTabulated > (gmx) | HostAllocationPolicy (gmx) | MrcDensitySkewData (gmx) | SetForceUnSupportedFiles (gmx::test) | UpdateGroups (gmx) |
CoulombCalculator< KernelCoulombType::RF > (gmx) |
| MtsLevel (gmx) | SetPrecision (gmx) | UpdateGroupsCog (gmx) |
CpuInfo (gmx) | MultiDimArray (gmx) | SetPrecisionSupportedFiles (gmx::test) | UserInputError (gmx) |
CrystallographicLabels (gmx) | IAnalysisDataModule (gmx) |
| SetPrecisionUnSupportedFiles (gmx::test) |
|
CubicSplineTable (gmx) | NbnxnPairlistCpuWork::IClusterData | SetStartTime (gmx) |
| ICommandLineModule (gmx) | NbnxmKernel | SetTimeStep (gmx) | VirtualSitesHandler (gmx) |
ICommandLineOptionsModule (gmx) | nbnxn_cj_packed_t | SettleData (gmx) |
|
DataFileFinder (gmx) | ICommandLineOptionsModuleSettings (gmx) | nbnxn_cj_t | SettleWaterTopology |
DataFileInfo (gmx) | IdentityFormatter (gmx) | nbnxn_cycle_t | SetVelocities (gmx) | wallcc_t |
DataFileOptions (gmx) | IEnergyAnalysis (gmx) | nbnxn_excl_t | SetVelocitySupportedFiles (gmx::test) | WarningHandler |
DDBalanceRegionHandler | IExecutableEnvironment (gmx) | nbnxn_im_ei_t | SetVelocityUnSupportedFiles (gmx::test) | WaterMolecule |
DefaultInitializationAllocator (gmx) | IFileInputRedirector (gmx) | nbnxn_sci | shakedata (gmx) | WholeMoleculeTransform (gmx) |
DensityFittingForce (gmx) | IFileMatcher (gmx::test) | NbnxnPairlistCpu | GaussianSpreadKernelParameters::Shape (gmx) | WriteCheckpointDataHolder (gmx) |
DensityFittingModuleInfo (gmx) | IFileMatcherSettings (gmx::test) | NbnxnPairlistCpuWork | Simd4DBool (gmx) |
|
DensitySimilarityMeasure (gmx) | IFileOutputRedirector (gmx) | no_delete (gmx) | Simd4Double (gmx) |
DevelopmentFeatureFlags (gmx) | IForceProvider (gmx) | NoContentsMatch (gmx::test) | Simd4FBool (gmx) | XvgMatch (gmx::test) |
HardwareTopology::Device (gmx) | IFrameConverter (gmx) | nonbonded_verlet_t | Simd4Float (gmx) | |
DeviceInformation | IHelpTopic (gmx) | NonbondedBenchmarkInfo (gmx) | SimdDBool (gmx) | |
DeviceStream | IKeyValueTreeTransformRules (gmx) | NoOptionalOutput (gmx::test) | SimdDIBool (gmx) | |
DeviceStreamManager (gmx) | IListIterator | NormalDistribution (gmx) | SimdDInt32 (gmx) | |
| | | | |