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| file | bonded.cpp |
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| file | bonded.h |
| | This file contains declarations necessary for low-level functions for computing energies and forces for bonded interactions.
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| file | disre.cpp |
| |
| file | disre.h |
| | Declares functions for handling distance restraints.
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| |
| file | listed_forces.cpp |
| |
| file | listed_forces.h |
| | This file contains declarations of high-level functions used by mdrun to compute energies and forces for listed interactions.
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| |
| file | listed_forces_gpu.h |
| | This file contains declarations of high-level functions used by mdrun to compute energies and forces for listed interactions.
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| file | listed_forces_gpu_impl.cpp |
| |
| file | listed_forces_gpu_impl.h |
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| file | listed_forces_gpu_impl_gpu.cpp |
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| file | listed_forces_gpu_internal_hip.cpp |
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| file | listed_forces_gpu_internal_shared.h |
| |
| file | listed_forces_gpu_internal_sycl.cpp |
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| file | listed_internal.cpp |
| |
| file | listed_internal.h |
| |
| file | manage_threading.cpp |
| |
| file | manage_threading.h |
| |
| file | orires.cpp |
| |
| file | orires.h |
| | Declares functions for handling orientation restraints.
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| |
| file | pairs.cpp |
| |
| file | pairs.h |
| | This file declares functions for "pair" interactions (i.e. listed non-bonded interactions, e.g. 1-4 interactions)
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| |
| file | position_restraints.cpp |
| |
| file | position_restraints.h |
| | This file contains declarations necessary for low-level functions for computing energies and forces for position restraints.
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| |
| file | restcbt.cpp |
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| file | restcbt.h |
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| file | utilities.h |
| |